mRNA_M-pyrifera_M_contig101658.339.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101658.339.1
Unique NamemRNA_M-pyrifera_M_contig101658.339.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101658.339.1 vs. uniprot
Match: A0A1B6Y9T2_9BACT (Peptidase S74 domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6Y9T2_9BACT)

HSP 1 Score: 181 bits (458), Expect = 3.660e-49
Identity = 103/192 (53.65%), Postives = 133/192 (69.27%), Query Frame = 1 
Query:    1 GTYGFANGLGTGQHIGVFGGAVNTEATGGARLGLYGQAASKAKYNFGVQALAQGEGSGDFVAVGDEVDGDYGSYNIGGGFYVQGNLNGNTGVEGVVSGDKGGRINFGVLGSARTTAEGFNVGVRGEASQSLSFNTALEGEASGTNKNLGLRLNVHNGTSNVGMEVNADTAAIFNGDVIVNGNLAYSGMSVGS 576
            GTYG ANG GTG H G+FGGAVN +ATGG R G++GQAASKAKYN+GV  LA G+G+G+     D  +GD+GS+N+GG F   GNLNGNTG +G+ +G+ G   NFG++G++RT+AEG N+G+R EA  SL+ NT  E  A+G N N        NGTSN+ +    DTAAI NG  I+NG+L  +G   GS
Sbjct:  206 GTYGMANGSGTGDHFGLFGGAVNFDATGGVRRGVHGQAASKAKYNYGVFGLAAGDGNGESDT--DPENGDFGSFNLGGYFQAYGNLNGNTGAQGISAGENGSLRNFGLIGTSRTSAEGRNIGLRAEAFNSLTENTGAEVVATGANNNXXXXXXXXNGTSNIAIIAEGDTAAILNGHSIINGDLTVNGNIFGS 395
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BLAST of mRNA_M-pyrifera_M_contig101658.339.1 vs. uniprot
Match: A0A3D4UUB9_9BACT (Peptidase S74 domain-containing protein n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D4UUB9_9BACT)

HSP 1 Score: 180 bits (456), Expect = 9.220e-49
Identity = 104/185 (56.22%), Postives = 134/185 (72.43%), Query Frame = 1 
Query:  127 KYNFGVQALAQGEGSGDFVAVGDEVDGDYGSYNIGGGFYVQGNLNGNTGVEGVVSGDKGGRINFGVLGSARTTAEGFNVGVRGEASQSLSFNTALEGEASGTNKNLGLRLNVHNGTSNVGMEVNADTAAIFNGDVIVNGNL----AYSGMSVGSS-STSYELNTADSDSSFTVDLSGPVSGTAVI 666
            K+NFGVQA+A+G+GSG+ V +G+EVD ++GSYNI GGFY  GNLNGN GVE   +G+ G RI+FGV+  A  T+   N+GVRGEA  S   N ALEGEASG+  NLGLRLNVH+G+SN+GMEVNADTAAI NG  ++          +G  VG   +T Y  +TA+ DS+F +++SGPVSGT +I
Sbjct:  247 KFNFGVQAVARGDGSGEIVPLGEEVDFNFGSYNIAGGFYSSGNLNGNVGVEAQAAGENGSRIDFGVIARAIGTSNSPNIGVRGEAFNSPQQNVALEGEASGSTYNLGLRLNVHSGSSNIGMEVNADTAAILNGHSVIXXXXXXXXTINGSGVGGGPTTDYVFDTANPDSTFLINVSGPVSGTGLI 431
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BLAST of mRNA_M-pyrifera_M_contig101658.339.1 vs. uniprot
Match: UPI0003803C36 (tail fiber domain-containing protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003803C36)

HSP 1 Score: 175 bits (443), Expect = 4.480e-47
Identity = 107/203 (52.71%), Postives = 132/203 (65.02%), Query Frame = 1 
Query:   10 GFANGLGTGQHIGVFGGAVNTEATGGARLGLYGQAASKAKYNFGVQALAQGEGSGDFVAVGDEVDGDY-GSYNIGGGFYVQGNLNGNTGVEGVVSGDKGGRINFGVLGSARTTAEGFNVGVRGEASQSLSFNTALEGEASGTNKNLGLRLNVHNGTSNVGMEVNADTAAIFNGDVIVNGNLAYSGMSVGSSSTSYELNTADSD 615
            G A G GTG HIG+   AVN  ATGG R GLYGQA+SKA+ N GV  +  GEGSGD V  G+EV G+  GSY IG   + + NLNGN GV G   G  G R+N GV   A TTA G N+GV   +  S S N A  G A G++KN G+ L+ H GTSN+GMEVNADTAAIFNGDV++NGN  ++G + G  S+S +    ++D
Sbjct:  210 GDAGGPGTGAHIGILASAVNHTATGGTRYGLYGQASSKAQTNLGVFGIGLGEGSGDIVLPGEEVPGEIPGSYTIGVEGWAKNNLNGNIGVRGYTYGASGARVNIGVGAEAATTASGTNIGVEAFSRGSSSENWAFNGIADGSSKNKGMILHAHGGTSNIGMEVNADTAAIFNGDVLINGNFIHNGSASGGGSSSVDSLIVETD 412
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BLAST of mRNA_M-pyrifera_M_contig101658.339.1 vs. uniprot
Match: A0A3D1GEZ4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GEZ4_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-11
Identity = 69/184 (37.50%), Postives = 89/184 (48.37%), Query Frame = 1 
Query:   10 GFANGLGTGQHIGVFGGAVNTEATGGARLGLYGQAASKAKYNFGVQALAQGEGSGDFVAVGDEVDGDYGSYNIGGGFYVQGNLNGNTGVEGVVSGDKGGRINFGVLGSARTTAEGFNVGVRGEASQSLSFNTALEGEASGTNKNLGLRLNVHNGTSNVGMEVNADTAAIFNGDVIVNGNLAYSG 561
            G+A+G GTG HIGV G A   EATG +R G+YGQA S AKYN+G++ +A G G+GD      E     GS N G       N  GN G+E    G+ G   N+GV G +R   E            + + N  + G ASG   N G+  +   G  N         A  F+GDV VNG    +G
Sbjct:  214 GWADGPGTGTHIGVIGTADAPEATGNSRTGVYGQATSLAKYNYGMRGVAYGTGNGDQGEGFGE-----GSVNFGLRGAATNNTWGNIGLEADAYGEAG-LNNYGVHGLSRAGTE------------TTTKNYGVAGRASGPGINYGVYGSAWEGVENY--------AGYFDGDVNVNGTFTVNG 371
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101658.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1B6Y9T2_9BACT3.660e-4953.65Peptidase S74 domain-containing protein n=1 Tax=Ba... [more]
A0A3D4UUB9_9BACT9.220e-4956.22Peptidase S74 domain-containing protein n=4 Tax=Ba... [more]
UPI0003803C364.480e-4752.71tail fiber domain-containing protein n=1 Tax=Balne... [more]
A0A3D1GEZ4_9BACT1.540e-1137.50Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101658contigM-pyrifera_M_contig101658:1..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score174.9
Seed ortholog evalue4.3e-41
Seed eggNOG ortholog1121104.AQXH01000007_gene476
KEGG koko:K09942,ko:K21449
KEGG TC1.B.40.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chaperone of endosialidase
EggNOG OGs4PKW4@976,COG3209@1,COG3209@2,COG5295@1,COG5295@2
COG Functional cat.M
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.849421-CDS-M-pyrifera_M_contig101658:0..6661622815514.849421-CDS-M-pyrifera_M_contig101658:0..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101658 1..666 -
1692277445.7375524-CDS-M-pyrifera_M_contig101658:0..6661692277445.7375524-CDS-M-pyrifera_M_contig101658:0..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101658 1..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101658.339.1prot_M-pyrifera_M_contig101658.339.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101658 1..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101658.339.1

>prot_M-pyrifera_M_contig101658.339.1 ID=prot_M-pyrifera_M_contig101658.339.1|Name=mRNA_M-pyrifera_M_contig101658.339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
GTYGFANGLGTGQHIGVFGGAVNTEATGGARLGLYGQAASKAKYNFGVQA
LAQGEGSGDFVAVGDEVDGDYGSYNIGGGFYVQGNLNGNTGVEGVVSGDK
GGRINFGVLGSARTTAEGFNVGVRGEASQSLSFNTALEGEASGTNKNLGL
RLNVHNGTSNVGMEVNADTAAIFNGDVIVNGNLAYSGMSVGSSSTSYELN
TADSDSSFTVDLSGPVSGTAVI
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mRNA from alignment at M-pyrifera_M_contig101658:1..666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101658.339.1 ID=mRNA_M-pyrifera_M_contig101658.339.1|Name=mRNA_M-pyrifera_M_contig101658.339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig101658:1..666- (Macrocystis pyrifera P11B4 male)
GGTACTTATGGCTTTGCTAATGGTTTAGGAACAGGGCAGCATATTGGCGT
GTTTGGTGGAGCTGTTAATACTGAAGCTACAGGAGGAGCCAGATTAGGTT
TGTATGGACAGGCTGCTTCTAAAGCAAAATACAATTTTGGAGTGCAAGCA
TTAGCACAGGGGGAAGGCTCTGGTGATTTCGTTGCAGTTGGCGATGAAGT
AGATGGAGATTATGGATCTTATAATATTGGTGGTGGATTTTATGTTCAAG
GAAACTTGAATGGGAATACAGGTGTAGAAGGCGTTGTAAGCGGGGATAAA
GGAGGCCGAATAAATTTTGGGGTTCTTGGATCTGCAAGAACTACTGCCGA
AGGCTTTAATGTTGGGGTTCGTGGAGAAGCAAGTCAGTCTTTAAGTTTTA
ATACAGCCCTTGAAGGTGAAGCGAGTGGAACGAATAAAAACCTTGGTCTT
AGACTAAACGTGCACAATGGTACATCTAATGTTGGAATGGAAGTGAACGC
CGATACAGCGGCTATTTTTAATGGTGATGTAATTGTAAATGGTAATCTCG
CTTATTCGGGAATGAGTGTAGGTTCTTCATCAACAAGTTATGAGCTTAAT
ACCGCCGATTCAGATTCATCTTTTACGGTAGATTTATCTGGTCCAGTTAG
TGGTACTGCAGTAATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101658:1..666-

>mRNA_M-pyrifera_M_contig101658.339.1 ID=mRNA_M-pyrifera_M_contig101658.339.1|Name=mRNA_M-pyrifera_M_contig101658.339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig101658:1..666- (Macrocystis pyrifera P11B4 male)
GGTACTTATGGCTTTGCTAATGGTTTAGGAACAGGGCAGCATATTGGCGT
GTTTGGTGGAGCTGTTAATACTGAAGCTACAGGAGGAGCCAGATTAGGTT
TGTATGGACAGGCTGCTTCTAAAGCAAAATACAATTTTGGAGTGCAAGCA
TTAGCACAGGGGGAAGGCTCTGGTGATTTCGTTGCAGTTGGCGATGAAGT
AGATGGAGATTATGGATCTTATAATATTGGTGGTGGATTTTATGTTCAAG
GAAACTTGAATGGGAATACAGGTGTAGAAGGCGTTGTAAGCGGGGATAAA
GGAGGCCGAATAAATTTTGGGGTTCTTGGATCTGCAAGAACTACTGCCGA
AGGCTTTAATGTTGGGGTTCGTGGAGAAGCAAGTCAGTCTTTAAGTTTTA
ATACAGCCCTTGAAGGTGAAGCGAGTGGAACGAATAAAAACCTTGGTCTT
AGACTAAACGTGCACAATGGTACATCTAATGTTGGAATGGAAGTGAACGC
CGATACAGCGGCTATTTTTAATGGTGATGTAATTGTAAATGGTAATCTCG
CTTATTCGGGAATGAGTGTAGGTTCTTCATCAACAAGTTATGAGCTTAAT
ACCGCCGATTCAGATTCATCTTTTACGGTAGATTTATCTGGTCCAGTTAG
TGGTACTGCAGTAATAGGTACTTATGGCTTTGCTAATGGTTTAGGAACAG
GGCAGCATATTGGCGTGTTTGGTGGAGCTGTTAATACTGAAGCTACAGGA
GGAGCCAGATTAGGTTTGTATGGACAGGCTGCTTCTAAAGCAAAATACAA
TTTTGGAGTGCAAGCATTAGCACAGGGGGAAGGCTCTGGTGATTTCGTTG
CAGTTGGCGATGAAGTAGATGGAGATTATGGATCTTATAATATTGGTGGT
GGATTTTATGTTCAAGGAAACTTGAATGGGAATACAGGTGTAGAAGGCGT
TGTAAGCGGGGATAAAGGAGGCCGAATAAATTTTGGGGTTCTTGGATCTG
CAAGAACTACTGCCGAAGGCTTTAATGTTGGGGTTCGTGGAGAAGCAAGT
CAGTCTTTAAGTTTTAATACAGCCCTTGAAGGTGAAGCGAGTGGAACGAA
TAAAAACCTTGGTCTTAGACTAAACGTGCACAATGGTACATCTAATGTTG
GAATGGAAGTGAACGCCGATACAGCGGCTATTTTTAATGGTGATGTAATT
GTAAATGGTAATCTCGCTTATTCGGGAATGAGTGTAGGTTCTTCATCAAC
AAGTTATGAGCTTAATACCGCCGATTCAGATTCATCTTTTACGGTAGATT
TATCTGGTCCAGTTAGTGGTACTGCAGTAATA
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