mRNA_M-pyrifera_M_contig101630.337.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101630.337.1
Unique NamemRNA_M-pyrifera_M_contig101630.337.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 8.090e-35
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 VMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            VMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR
Sbjct:  120 VMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 181
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.940e-16
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 VMEEFNFAE------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            +++EF F E      GG  R   N+GRIVGFREHVFTH+VS++ANFFSLQE  FV+ATQR LD PL +R
Sbjct:   55 MLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIR 123
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.110e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 VMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            ++ EF+F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VR
Sbjct:  752 LLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVR 808
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.200e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 VMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            ++ EF+F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VR
Sbjct: 1326 LLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVR 1382
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT)

HSP 1 Score: 58.2 bits (139), Expect = 2.970e-8
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   61 IVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRE 189
            IVGFREH+FT  +S++A++ +LQE  FV+ TQR L NPLH+R+
Sbjct:  455 IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQ 497
[Close]
BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A3R7ISY7_9STRA (1,3-beta-glucan synthase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ISY7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.110e-8
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   16 NFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            NF   GT  G+NI  ++G +EH+FT   S++A+F +LQEL FVS TQR L NPL  R
Sbjct: 1116 NFLATGTADGKNI-TVIGMKEHIFTGRASSLAHFMTLQELVFVSLTQRVLANPLQSR 1171
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A662YHH3_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHH3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.950e-7
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   16 NFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            NF   GT  G+++  I+G +EH+FT   S++A+F +LQEL FVS TQR L NPL  R
Sbjct: 1150 NFLATGTADGKDV-TIIGMKEHIFTGRASSLAHFMTLQELVFVSLTQRVLANPLQSR 1205
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BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: R1E180_EMIHU (Callose synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E180_EMIHU)

HSP 1 Score: 55.8 bits (133), Expect = 1.950e-7
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   61 IVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRE 189
            IVGFREH+FT ++S++A++ +LQE  FV+ TQR L +PLH+R+
Sbjct:  754 IVGFREHIFTGELSSLASYMALQEGCFVTLTQRVLSDPLHIRQ 796
[Close]
BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: R1BX15_EMIHU (1,3-beta-glucan synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX15_EMIHU)

HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   61 IVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRE 189
            IVGFREH+FT ++S++A++ +LQE  FV+ TQR L +PLH+R+
Sbjct: 1170 IVGFREHIFTGELSSLASYMALQEGCFVTLTQRVLSDPLHIRQ 1212
[Close]
BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Match: A0A484EB00_BRELC (1,3-beta-glucan synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB00_BRELC)

HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   16 NFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVR 186
            NF    T +G+N+  I+G +EH+FT   S++A+F +LQEL FVS TQR L NPL  R
Sbjct: 1138 NFLATATRKGQNV-TIIGMKEHIFTGRASSLAHFMTLQELVFVSLTQRVLANPLQSR 1193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101630.337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU6_ECTSI8.090e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD62_9STRA2.940e-1660.871,3-beta-glucan synthase component-domain-containi... [more]
A0A6H5L5X7_9PHAE8.110e-1462.90GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN7_ECTSI8.200e-1462.901,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3U6Q4_9SPIT2.970e-858.14Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A3R7ISY7_9STRA4.110e-852.631,3-beta-glucan synthase n=4 Tax=Phytophthora kern... [more]
A0A662YHH3_9STRA1.950e-750.881,3-beta-glucan synthase (Fragment) n=2 Tax=Nothop... [more]
R1E180_EMIHU1.950e-755.81Callose synthase n=1 Tax=Emiliania huxleyi TaxID=2... [more]
R1BX15_EMIHU1.960e-755.811,3-beta-glucan synthase n=1 Tax=Emiliania huxleyi... [more]
A0A484EB00_BRELC1.960e-750.881,3-beta-glucan synthase n=1 Tax=Bremia lactucae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101630contigM-pyrifera_M_contig101630:193..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D7FIU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-00_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.7462423-UTR-M-pyrifera_M_contig101630:192..1951622815514.7462423-UTR-M-pyrifera_M_contig101630:192..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101630 193..195 +
1692277445.6893296-UTR-M-pyrifera_M_contig101630:192..1951692277445.6893296-UTR-M-pyrifera_M_contig101630:192..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101630 193..195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.7582307-CDS-M-pyrifera_M_contig101630:195..3931622815514.7582307-CDS-M-pyrifera_M_contig101630:195..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101630 196..393 +
1692277445.7125967-CDS-M-pyrifera_M_contig101630:195..3931692277445.7125967-CDS-M-pyrifera_M_contig101630:195..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101630 196..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101630.337.1prot_M-pyrifera_M_contig101630.337.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101630 196..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101630.337.1

>prot_M-pyrifera_M_contig101630.337.1 ID=prot_M-pyrifera_M_contig101630.337.1|Name=mRNA_M-pyrifera_M_contig101630.337.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSAT
QRALDNPLHVREENK*
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mRNA from alignment at M-pyrifera_M_contig101630:193..393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101630.337.1 ID=mRNA_M-pyrifera_M_contig101630.337.1|Name=mRNA_M-pyrifera_M_contig101630.337.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig101630:193..393+ (Macrocystis pyrifera P11B4 male)
GTCATGGAAGAGTTCAACTTTGCGGAGGGCGGCACGGGTCGGGGGCGCAA
CATCGGGCGCATCGTGGGCTTCCGCGAGCACGTGTTCACGCACGACGTGT
CCGCGGTGGCGAATTTCTTCAGCCTTCAGGAGCTCAACTTTGTCTCGGCC
ACCCAGCGAGCCCTCGACAACCCCCTGCACGTGAGAGAAGAGAACAAGTA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101630:193..393+

>mRNA_M-pyrifera_M_contig101630.337.1 ID=mRNA_M-pyrifera_M_contig101630.337.1|Name=mRNA_M-pyrifera_M_contig101630.337.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig101630:193..393+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAGTTCAACTTTGCGGAGGGCGGCACGGGTCGGGGGCGCAACAT
CGGGCGCATCGTGGGCTTCCGCGAGCACGTGTTCACGCACGACGTGTCCG
CGGTGGCGAATTTCTTCAGCCTTCAGGAGCTCAACTTTGTCTCGGCCACC
CAGCGAGCCCTCGACAACCCCCTGCACGTGAGAGAAGAGAACAAGTAGAT
GGAAGAGTTCAACTTTGCGGAGGGCGGCACGGGTCGGGGGCGCAACATCG
GGCGCATCGTGGGCTTCCGCGAGCACGTGTTCACGCACGACGTGTCCGCG
GTGGCGAATTTCTTCAGCCTTCAGGAGCTCAACTTTGTCTCGGCCACCCA
GCGAGCCCTCGACAACCCCCTGCACGTGAGAGAAGAGAACAAGTAG
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