mRNA_M-pyrifera_M_contig101593.334.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101593.334.1
Unique NamemRNA_M-pyrifera_M_contig101593.334.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A7S2S1Z4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S1Z4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-16
Identity = 65/191 (34.03%), Postives = 97/191 (50.79%), Query Frame = 1 
Query:   55 SDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDV-----VGDHDLIGTCEIPFYELTSK-LGS--ADSKWRPVLRDGEIRGQVFCTLEMLNAVVEGDEDVPTTTEPNQVRLTVLRARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            SDPY +VR   +  KT  V+  LNP W+    +FG     D L+E+ +VE  V+D D      V D D +G+  IP Y LTS+ LG     ++W P+   GEI+  VF +    +  V+  +      E   +++TVL  R++PA N   +SS+P C +      P       V+T +Q KT  P+WN+ F
Sbjct:  380 SDPYCRVRCRGKTQKTRTVKRTLNPKWNQV-MQFG---KGDFLQESNEVEFTVFDRDFGVLEGVSD-DKLGSVRIPIYLLTSQDLGEEMGGTRWFPLDGGGEIQLSVFFSKPKNDTAVDIYKGKVWLYE---LQVTVLSGRNLPARNEKAQSSNPFCELHCGAHKP-------VKTKIQKKTTNPIWNQQF 555
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A670K0M6_PODMU (Extended synaptotagmin 1 n=8 Tax=Episquamata TaxID=1329912 RepID=A0A670K0M6_PODMU)

HSP 1 Score: 85.9 bits (211), Expect = 5.970e-16
Identity = 70/218 (32.11%), Postives = 111/218 (50.92%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCT--------LE---MLNAVVEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ DLNP W +  +E      P      + VE +++D DV  D D +G C+IP   + S+      +W P+  ++ G +  ++ C         LE   M+N++++     P + E +   L+V   RA  +P L  G +S  P  ++ +RG         S +T V S+T EP+WNE F
Sbjct:  843 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEDLNPRWSEI-YEVIVSNVP-----GQDVEFDLYDKDVDKD-DFLGRCKIPLRRVLSQ--KFVDEWLPLEDVKSGRLHVKLECLPPTPSAAELEQVLMVNSLIQ----TPKSEELSSALLSVFLDRATDLP-LRKGSKSPSPYASLSVRGV--------SYKTKVSSQTAEPVWNEAF 1037
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: G1KHA9_ANOCA (Uncharacterized protein n=10 Tax=Episquamata TaxID=1329912 RepID=G1KHA9_ANOCA)

HSP 1 Score: 82.0 bits (201), Expect = 1.230e-14
Identity = 64/214 (29.91%), Postives = 107/214 (50.00%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNA-------VVEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ DLNP W +  +E    + P      ++VE +++D DV  D D +G C+IP  ++ S       +W P+  ++ G +  ++ C     +A       +V      P + E +   L+V   RA  +P +  G +   P  ++ +RG         S +T V S+T +P+W+E F
Sbjct:  499 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEDLNPRWSEI-YEVVVSDIP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLRQVLSS--KFVDEWLPLEDVKSGRLHVKLECLPPTYSAAELEQVLIVNSLIQTPKSEELSSALLSVFLDRAADLP-MRKGSKPPSPFVSLSVRGI--------SYKTKVSSQTADPVWDEAF 693
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: UPI001C4B3E9B (extended synaptotagmin-1 isoform X2 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4B3E9B)

HSP 1 Score: 79.0 bits (193), Expect = 1.390e-13
Identity = 65/214 (30.37%), Postives = 106/214 (49.53%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNA-------VVEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ +LNP W +  +E      P      ++VE +++D DV  D D +G C+IP   + S       +W P+  ++ G +  ++ C     +A       +V      P + E +   L+V   RA  +P L  G +   P  ++ +RG         S +T V S+T+EP+W+E F
Sbjct:  454 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEELNPRWSEI-YEVIVSNIP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLRRVLSS--KFVDEWLPLEDVKSGRLHVKLECLPPTASAAELEKVLLVNSLIQTPKSEELSSALLSVFLDRAADLP-LRKGSKFPSPYASLSVRGI--------SYKTKVCSQTVEPVWDEAF 648
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A8C6VGQ6_NAJNA (Extended synaptotagmin 1 n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6VGQ6_NAJNA)

HSP 1 Score: 79.0 bits (193), Expect = 1.430e-13
Identity = 65/214 (30.37%), Postives = 104/214 (48.60%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNAV-------VEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ DLNP W +  +E      P      ++VE +++D DV  D D +G C+IP   +   +     +W P+  ++ G +  ++ C   + +A        V      P + E +   L+V   RA  +P L  G +   P  ++ +RG         S +T V  +T EPMW+E F
Sbjct:  618 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEDLNPRWSEI-YEVIVSNTP-----GQEVEFDLYDKDVDRD-DFLGRCKIPLKRVL--ISKFVDEWLPLEDVKSGRLHVKLECLPPIPSAAELEQVLRVNSLIQTPKSEELSSALLSVFLDRATELP-LRKGSKPPSPYVSLSVRGI--------SYKTKVCPQTAEPMWDEAF 812
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: UPI002026ED48 (extended synaptotagmin-1 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026ED48)

HSP 1 Score: 79.0 bits (193), Expect = 1.450e-13
Identity = 66/215 (30.70%), Postives = 108/215 (50.23%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYE-LTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNA-------VVEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ +LNP W +  +E    + P      ++VE +++D DV  D D +G C+IP    LT K      +W P+  ++ G +  ++ C   M +A       +V      P   E +   L+V   RA  +P +  G +  +P  ++ +RG         S +T V S+T +P+W+E F
Sbjct:  670 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEELNPRWSEI-YEVIVNDVP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLRRALTCKFVD---EWLPLEDVKSGRLHVKLECLPPMPSAAELEQVLLVNSLIQTPKNEELSSALLSVFLDRAAELP-MRKGSKPPNPYVSLSVRGT--------SYKTKVASQTADPIWDEGF 864
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A670YSP6_PSETE (Extended synaptotagmin 1 n=8 Tax=Elapidae TaxID=8602 RepID=A0A670YSP6_PSETE)

HSP 1 Score: 78.6 bits (192), Expect = 1.920e-13
Identity = 66/214 (30.84%), Postives = 104/214 (48.60%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNAV-------VEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F+T V++ DLNP W +  +E      P      ++VE +++D DV  D D +G C+IP   + S       +W P+  ++ G +  ++ C   + +A        V      P + E +   L+V   RA  +P L  G +   P  ++ +RG         S +T V  +T EP+W+E F
Sbjct:  624 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRTRVIKEDLNPRWSEI-YEVIVSNIP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLKRVLSS--KFLDEWLPLEDVKSGRLHVKLECLPPIPSAADLEQVLRVNSLIQTPKSEELSSAVLSVFLDRATELP-LRKGSKPPSPYVSLSVRGI--------SYKTKVCPQTAEPVWDEAF 818
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A8D0BZU9_9SAUR (Extended synaptotagmin 1 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BZU9_9SAUR)

HSP 1 Score: 78.2 bits (191), Expect = 2.660e-13
Identity = 65/217 (29.95%), Postives = 109/217 (50.23%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCT--------LE---MLNAVVEGDEDVPTTTEPNQVRLTVLRARHIPA-LNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ +LNP W +  +E      P      ++VE +++D DV  D D +G C+IP  ++ S       +W P+  ++ G +  ++ C         LE   M+N++++     P + E +   L+V   R I   L  G +   P  ++ +RG         S +T V  +T EP+W+E+F
Sbjct:  648 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEELNPRWSEI-YEVIVNNVP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLRKVLST--KFVDEWLPLEDVKSGRLHVKLECLPPIPSAAELEQVLMVNSLIQ----TPKSEELSSALLSVFLERAIDLPLRKGSKPPSPYVSLSVRGI--------SYKTKVSPQTAEPIWDESF 842
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A6I9XK11_9SAUR (extended synaptotagmin-1 n=14 Tax=Serpentes TaxID=8570 RepID=A0A6I9XK11_9SAUR)

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-12
Identity = 63/214 (29.44%), Postives = 103/214 (48.13%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNAV-------VEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ DLNP W +  +E      P      +++E +++D DV  D D +G C+IP   +   +     +W P+  ++ G +  ++ C   + +A        V      P + E +   L+V   RA  +P L  G +   P   + +RG         S +T V  +T EP+W+E F
Sbjct:  640 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEDLNPRWSEI-YEVIVSNIP-----GQEIEFDLYDKDVDRD-DFLGRCKIPLKRVL--INKFVDEWLPLEDVKSGRLHVKLECLPPIPSAAELEQVLRVNSLIQTPKSEELSSALLSVFLDRATELP-LRKGSKPPSPYINLSVRGI--------SYKTKVCPQTAEPVWDEAF 834
[Close]
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Match: A0A8D2IUJ0_VARKO (Extended synaptotagmin 1 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2IUJ0_VARKO)

HSP 1 Score: 75.1 bits (183), Expect = 3.080e-12
Identity = 65/215 (30.23%), Postives = 106/215 (49.30%), Query Frame = 1 
Query:    1 EAEGLEAMDP--GNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEAPDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYE-LTSKLGSADSKWRPV--LRDGEIRGQVFCTLEMLNAV-------VEGDEDVPTTTEPNQVRLTVL--RARHIPALNSGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF 603
            EAE L A D   G  +K   SDPY+KVR+G Q+F++ V++ +LNP W +  +E      P      ++VE +++D DV  D D +G C+IP  + L+SK   A   W P+  ++ G +  ++ C   + +A        V      P + E +   L+V   RA  +P L  G +   P  ++ + G         S +T V  + +EP+W+E F
Sbjct:  668 EAENLIAKDNFMGGMIKG-KSDPYVKVRLGGQKFRSRVIKEELNPRWSEI-YEVIVNNIP-----GQEVEFDLYDKDVDKD-DFLGRCKIPLRQVLSSKFVDA---WLPLEDVKSGRLHVKLECLPPIPSAAELEQVLRVNSLIQTPKSEELSSALLSVFLDRATDLP-LRKGSKPPSPYISLSVHGV--------SYKTKVAPQMVEPVWDEAF 862
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101593.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2S1Z4_9STRA1.340e-1634.03Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A670K0M6_PODMU5.970e-1632.11Extended synaptotagmin 1 n=8 Tax=Episquamata TaxID... [more]
G1KHA9_ANOCA1.230e-1429.91Uncharacterized protein n=10 Tax=Episquamata TaxID... [more]
UPI001C4B3E9B1.390e-1330.37extended synaptotagmin-1 isoform X2 n=1 Tax=Scelop... [more]
A0A8C6VGQ6_NAJNA1.430e-1330.37Extended synaptotagmin 1 n=1 Tax=Naja naja TaxID=3... [more]
UPI002026ED481.450e-1330.70extended synaptotagmin-1 n=1 Tax=Sphaerodactylus t... [more]
A0A670YSP6_PSETE1.920e-1330.84Extended synaptotagmin 1 n=8 Tax=Elapidae TaxID=86... [more]
A0A8D0BZU9_9SAUR2.660e-1329.95Extended synaptotagmin 1 n=1 Tax=Salvator merianae... [more]
A0A6I9XK11_9SAUR1.200e-1229.44extended synaptotagmin-1 n=14 Tax=Serpentes TaxID=... [more]
A0A8D2IUJ0_VARKO3.080e-1230.23Extended synaptotagmin 1 n=1 Tax=Varanus komodoens... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101593contigM-pyrifera_M_contig101593:62..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.3
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog28377.ENSACAP00000007865
Preferred nameESYT1
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0006810,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008021,GO:0008150,GO:0008289,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016079,GO:0016192,GO:0017156,GO:0023052,GO:0023061,GO:0030133,GO:0030176,GO:0031224,GO:0031226,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0042175,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044232,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045055,GO:0045202,GO:0046903,GO:0046907,GO:0048489,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0065007,GO:0065008,GO:0070382,GO:0071944,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098793,GO:0098827,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643
EggNOG free text desc.C2 domain
EggNOG OGs38DXC@33154,3BC6K@33208,3CUPV@33213,484RS@7711,49636@7742,COG5038@1,KOG1012@2759
COG Functional cat.M
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size603
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.6107924-CDS-M-pyrifera_M_contig101593:61..6431622815514.6107924-CDS-M-pyrifera_M_contig101593:61..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101593 62..643 -
1692277445.6216357-CDS-M-pyrifera_M_contig101593:61..6431692277445.6216357-CDS-M-pyrifera_M_contig101593:61..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101593 62..643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.6224148-UTR-M-pyrifera_M_contig101593:643..6641622815514.6224148-UTR-M-pyrifera_M_contig101593:643..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101593 644..664 -
1692277445.635878-UTR-M-pyrifera_M_contig101593:643..6641692277445.635878-UTR-M-pyrifera_M_contig101593:643..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101593 644..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101593.334.1prot_M-pyrifera_M_contig101593.334.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101593 62..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101593.334.1

>prot_M-pyrifera_M_contig101593.334.1 ID=prot_M-pyrifera_M_contig101593.334.1|Name=mRNA_M-pyrifera_M_contig101593.334.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MDPGNAVKAASSDPYLKVRVGKQEFKTSVVRSDLNPIWDDASFEFGGEEA
PDMLREAEKVEIEVWDYDVVGDHDLIGTCEIPFYELTSKLGSADSKWRPV
LRDGEIRGQVFCTLEMLNAVVEGDEDVPTTTEPNQVRLTVLRARHIPALN
SGGESSDPLCTIRLRGADPSTARGKSVRTSVQSKTLEPMWNETF
back to top

mRNA from alignment at M-pyrifera_M_contig101593:62..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101593.334.1 ID=mRNA_M-pyrifera_M_contig101593.334.1|Name=mRNA_M-pyrifera_M_contig101593.334.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=603bp|location=Sequence derived from alignment at M-pyrifera_M_contig101593:62..664- (Macrocystis pyrifera P11B4 male)
GAGGCCGAAGGGCTTGAAGCAATGGATCCTGGAAATGCTGTCAAGGCAGC
TTCTTCGGACCCTTACTTGAAAGTGCGCGTGGGGAAGCAGGAATTCAAAA
CCAGCGTGGTTCGTTCTGATTTGAACCCTATTTGGGATGATGCATCGTTT
GAGTTTGGGGGGGAAGAAGCACCTGATATGTTACGTGAAGCAGAAAAGGT
GGAAATTGAAGTATGGGATTATGATGTAGTAGGAGATCATGATTTGATTG
GAACTTGCGAAATTCCATTCTACGAGCTTACTAGTAAGTTGGGAAGTGCA
GATTCGAAGTGGAGACCAGTGTTACGGGATGGAGAAATCCGAGGACAAGT
ATTTTGTACATTGGAGATGCTCAATGCTGTGGTGGAAGGCGATGAAGATG
TTCCAACTACTACAGAACCGAACCAAGTTCGACTCACTGTATTGCGTGCT
CGTCACATTCCTGCACTCAATTCTGGTGGTGAATCTTCAGACCCACTTTG
TACTATACGCTTGCGCGGTGCTGATCCATCTACTGCTCGGGGAAAGTCTG
TGAGGACTTCAGTGCAATCCAAGACATTGGAGCCAATGTGGAATGAAACA
TTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101593:62..664-

>mRNA_M-pyrifera_M_contig101593.334.1 ID=mRNA_M-pyrifera_M_contig101593.334.1|Name=mRNA_M-pyrifera_M_contig101593.334.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig101593:62..664- (Macrocystis pyrifera P11B4 male)
ATGGATCCTGGAAATGCTGTCAAGGCAGCTTCTTCGGACCCTTACTTGAA
AGTGCGCGTGGGGAAGCAGGAATTCAAAACCAGCGTGGTTCGTTCTGATT
TGAACCCTATTTGGGATGATGCATCGTTTGAGTTTGGGGGGGAAGAAGCA
CCTGATATGTTACGTGAAGCAGAAAAGGTGGAAATTGAAGTATGGGATTA
TGATGTAGTAGGAGATCATGATTTGATTGGAACTTGCGAAATTCCATTCT
ACGAGCTTACTAGTAAGTTGGGAAGTGCAGATTCGAAGTGGAGACCAGTG
TTACGGGATGGAGAAATCCGAGGACAAGTATTTTGTACATTGGAGATGCT
CAATGCTGTGGTGGAAGGCGATGAAGATGTTCCAACTACTACAGAACCGA
ACCAAGTTCGACTCACTGTATTGCGTGCTCGTCACATTCCTGCACTCAAT
TCTGGTGGTGAATCTTCAGACCCACTTTGTACTATACGCTTGCGCGGTGC
TGATCCATCTACTGCTCGGGGAAAGTCTGTGAGGACTTCAGTGCAATCCA
AGACATTGGAGCCAATGTGGAATGAAACATTCATGGATCCTGGAAATGCT
GTCAAGGCAGCTTCTTCGGACCCTTACTTGAAAGTGCGCGTGGGGAAGCA
GGAATTCAAAACCAGCGTGGTTCGTTCTGATTTGAACCCTATTTGGGATG
ATGCATCGTTTGAGTTTGGGGGGGAAGAAGCACCTGATATGTTACGTGAA
GCAGAAAAGGTGGAAATTGAAGTATGGGATTATGATGTAGTAGGAGATCA
TGATTTGATTGGAACTTGCGAAATTCCATTCTACGAGCTTACTAGTAAGT
TGGGAAGTGCAGATTCGAAGTGGAGACCAGTGTTACGGGATGGAGAAATC
CGAGGACAAGTATTTTGTACATTGGAGATGCTCAATGCTGTGGTGGAAGG
CGATGAAGATGTTCCAACTACTACAGAACCGAACCAAGTTCGACTCACTG
TATTGCGTGCTCGTCACATTCCTGCACTCAATTCTGGTGGTGAATCTTCA
GACCCACTTTGTACTATACGCTTGCGCGGTGCTGATCCATCTACTGCTCG
GGGAAAGTCTGTGAGGACTTCAGTGCAATCCAAGACATTGGAGCCAATGT
GGAATGAAACATTC
back to top