mRNA_M-pyrifera_M_contig101591.333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101591.333.1
Unique NamemRNA_M-pyrifera_M_contig101591.333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A517WLZ0_9PLAN (Methyltransf_11 domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A517WLZ0_9PLAN)

HSP 1 Score: 181 bits (459), Expect = 1.160e-55
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLGQFA 270
            QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQG+AGYDEML+QL +IFE HQTAG+VRFEYDTNVYLGQFA
Sbjct:  164 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGEAGYDEMLNQLKLIFEAHQTAGKVRFEYDTNVYLGQFA 253          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A518AFD8_9PLAN (Putative methyltransferase YcgJ n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFD8_9PLAN)

HSP 1 Score: 128 bits (321), Expect = 8.340e-35
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            Q VNHTRIT DDF  FFAP    + TF NEQIFDLPALTGR+LSSSYCPN GD GY+E++ +L  IF ++Q+AG V FEYDTNVYLG
Sbjct:  165 QQVNHTRITADDFQKFFAPYPVEQLTFSNEQIFDLPALTGRLLSSSYCPNVGDPGYEEIMDRLERIFTENQSAGTVCFEYDTNVYLG 251          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A517RPP1_9PLAN (Methyltransf_11 domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RPP1_9PLAN)

HSP 1 Score: 106 bits (265), Expect = 1.910e-26
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            ++VNHT+I+ +DFA FF P      T  N Q FD  +L GR+LSSSYCPN+G  GY+ M+ +L  IFE+HQT G V FEYDT +Y G
Sbjct:  164 KEVNHTQISHEDFARFFDPHPLHTHTLPNSQTFDFESLKGRLLSSSYCPNEGQPGYEPMMKRLQDIFEEHQTEGSVLFEYDTTLYFG 250          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A517VP16_9PLAN (Methyltransf_11 domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VP16_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 3.800e-26
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            Q +NHT IT  +   FF P      TF N QIFD PAL GR+LSSSYCPN G+AGY+E++ +L  IFE++QT G++ FEY T +Y G
Sbjct:  164 QQINHTNITLAELEQFFDPHPIEHRTFPNHQIFDFPALKGRLLSSSYCPNLGEAGYEEIMKRLQEIFEENQTEGKIMFEYKTTLYFG 250          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A518ILF3_9PLAN (Methyltransf_11 domain-containing protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518ILF3_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 1.650e-24
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 DVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            +VNHT+I+ DDFA FF P   +  T  N Q FD  AL GR+LSSSYCPN+G  GY+ ++ +L  IFE+ QT G V FEYDT ++ G
Sbjct:  165 EVNHTQISHDDFARFFDPYPINTRTLPNHQTFDFEALKGRLLSSSYCPNEGQPGYESIIARLQEIFEEFQTEGTVLFEYDTTLFYG 250          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A0T5ZT31_9BACT (Methylase n=1 Tax=Candidatus Dadabacteria bacterium CSP1-2 TaxID=1640508 RepID=A0A0T5ZT31_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.620e-20
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLGQF 267
            ++VN     + +FA FF  DSF    F N Q+F+  +L GRVLSSSY P +G   Y++M+  L+ IF ++Q+ G+VRFEYDT VY GQF
Sbjct:  170 KEVNQQIPDERNFAKFFGHDSFQLKIFHNFQVFNFDSLKGRVLSSSYAPMKGHPNYEQMMRNLHRIFLEYQSDGKVRFEYDTEVYYGQF 258          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A328TUF2_9BACL (SAM-dependent methyltransferase n=1 Tax=Paenibacillus montanisoli TaxID=2081970 RepID=A0A328TUF2_9BACL)

HSP 1 Score: 90.1 bits (222), Expect = 4.340e-20
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            +DVNH R++ +DFA FF    ++K  F N+Q+FDL  L GR +SSSY P  G   ++  +  L  +F+ HQ  G VRF Y+T +YLG
Sbjct:  162 KDVNHRRLSHEDFAAFFQGGKYAKAVFANQQLFDLEGLKGRTMSSSYVPLPGSPAFEPYMKALETLFQAHQKDGAVRFPYETEIYLG 248          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: A0A1V9EPI2_9BACT (Methyltransferase type 11 n=1 Tax=Niastella yeongjuensis TaxID=354355 RepID=A0A1V9EPI2_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 1.220e-19
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    7 VNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLGQF 267
            V H  I   D   FFAP       F N+Q+FD   L GR+LSSSY P QG+AGY+EML  LN +F+ +Q AG +   YDT +Y G++
Sbjct:  163 VKHRNIEPADIESFFAPAPMELKVFDNQQVFDFDGLKGRLLSSSYMPLQGEAGYEEMLTALNKLFDKYQQAGTITITYDTRLYAGKW 249          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: UPI001B1A2145 (Class I SAM-dependent methyltransferase n=1 Tax=Chitinophaga sp. TaxID=1869181 RepID=UPI001B1A2145)

HSP 1 Score: 88.6 bits (218), Expect = 1.690e-19
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLGQ 264
            +D+ H  +     A FF P +  + +FQN QIFD PAL GR+LSSSY P +G   YD+M+  L  +FE +Q  G V+F Y+T +Y+G+
Sbjct:  162 KDMQHRNVGASQLAGFFQPGTMQEKSFQNAQIFDFPALKGRLLSSSYAPEKGHPVYDDMIRALEDLFEKYQEQGMVKFHYETMLYIGK 249          
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Match: UPI00117804BA (class I SAM-dependent methyltransferase n=1 Tax=Chitinophaga vietnamensis TaxID=2593957 RepID=UPI00117804BA)

HSP 1 Score: 86.7 bits (213), Expect = 9.370e-19
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPNQGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLG 261
            ++VNH  +     A+FFAP  +   TFQN Q+FD   L GR+LSSSY P++    Y  M+  L  IFE HQ    V+F YDT +YLG
Sbjct:  162 KEVNHKNVGASQLANFFAPHPYIHHTFQNAQLFDFTGLKGRLLSSSYAPDEHHPAYTPMIKALEDIFEQHQENRMVKFHYDTQLYLG 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101591.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WLZ0_9PLAN1.160e-5593.33Methyltransf_11 domain-containing protein n=7 Tax=... [more]
A0A518AFD8_9PLAN8.340e-3568.97Putative methyltransferase YcgJ n=3 Tax=Gimesia pa... [more]
A0A517RPP1_9PLAN1.910e-2654.02Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A517VP16_9PLAN3.800e-2654.02Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A518ILF3_9PLAN1.650e-2453.49Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A0T5ZT31_9BACT3.620e-2048.31Methylase n=1 Tax=Candidatus Dadabacteria bacteriu... [more]
A0A328TUF2_9BACL4.340e-2044.83SAM-dependent methyltransferase n=1 Tax=Paenibacil... [more]
A0A1V9EPI2_9BACT1.220e-1947.13Methyltransferase type 11 n=1 Tax=Niastella yeongj... [more]
UPI001B1A21451.690e-1944.32Class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]
UPI00117804BA9.370e-1945.98class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101591contigM-pyrifera_M_contig101591:395..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.9
Seed ortholog evalue1e-17
Seed eggNOG ortholog1396418.BATQ01000066_gene1615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2IWK1@203494,46V7Q@74201,COG0500@1,COG2226@2
COG Functional cat.Q
Best tax levelVerrucomicrobiae
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.577279-CDS-M-pyrifera_M_contig101591:394..6671622815514.577279-CDS-M-pyrifera_M_contig101591:394..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101591 395..667 -
1692277445.6095612-CDS-M-pyrifera_M_contig101591:394..6671692277445.6095612-CDS-M-pyrifera_M_contig101591:394..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101591 395..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101591.333.1prot_M-pyrifera_M_contig101591.333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101591 395..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101591.333.1

>prot_M-pyrifera_M_contig101591.333.1 ID=prot_M-pyrifera_M_contig101591.333.1|Name=mRNA_M-pyrifera_M_contig101591.333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
QDVNHTRITDDDFAHFFAPDSFSKFTFQNEQIFDLPALTGRVLSSSYCPN
QGDAGYDEMLHQLNVIFEDHQTAGRVRFEYDTNVYLGQFA*
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mRNA from alignment at M-pyrifera_M_contig101591:395..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101591.333.1 ID=mRNA_M-pyrifera_M_contig101591.333.1|Name=mRNA_M-pyrifera_M_contig101591.333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig101591:395..667- (Macrocystis pyrifera P11B4 male)
CAGGATGTGAATCACACCCGGATTACGGACGATGATTTCGCCCACTTTTT TGCTCCGGACTCATTCAGCAAATTTACATTTCAGAATGAACAGATTTTCG ATCTGCCTGCGTTGACGGGGCGAGTGCTTTCATCGTCTTACTGTCCCAAT CAGGGAGATGCCGGGTACGACGAAATGCTGCATCAGCTGAATGTAATCTT CGAAGATCATCAGACAGCGGGCAGGGTGCGGTTTGAATACGATACTAATG TGTATCTGGGGCAGTTTGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101591:395..667-

>mRNA_M-pyrifera_M_contig101591.333.1 ID=mRNA_M-pyrifera_M_contig101591.333.1|Name=mRNA_M-pyrifera_M_contig101591.333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig101591:395..667- (Macrocystis pyrifera P11B4 male)
CAGGATGTGAATCACACCCGGATTACGGACGATGATTTCGCCCACTTTTT
TGCTCCGGACTCATTCAGCAAATTTACATTTCAGAATGAACAGATTTTCG
ATCTGCCTGCGTTGACGGGGCGAGTGCTTTCATCGTCTTACTGTCCCAAT
CAGGGAGATGCCGGGTACGACGAAATGCTGCATCAGCTGAATGTAATCTT
CGAAGATCATCAGACAGCGGGCAGGGTGCGGTTTGAATACGATACTAATG
TGTATCTGGGGCAGTTTGCCTGACAGGATGTGAATCACACCCGGATTACG
GACGATGATTTCGCCCACTTTTTTGCTCCGGACTCATTCAGCAAATTTAC
ATTTCAGAATGAACAGATTTTCGATCTGCCTGCGTTGACGGGGCGAGTGC
TTTCATCGTCTTACTGTCCCAATCAGGGAGATGCCGGGTACGACGAAATG
CTGCATCAGCTGAATGTAATCTTCGAAGATCATCAGACAGCGGGCAGGGT
GCGGTTTGAATACGATACTAATGTGTATCTGGGGCAGTTTGCCTGA
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