mRNA_M-pyrifera_M_contig101588.331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101588.331.1
Unique NamemRNA_M-pyrifera_M_contig101588.331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A518AEP3_9PLAN (Type II secretion system protein G n=6 Tax=Gimesia TaxID=1649453 RepID=A0A518AEP3_9PLAN)

HSP 1 Score: 254 bits (649), Expect = 4.630e-83
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTYKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S T+IRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATT KFENIRYGLVQARVGWSMINGTGYQFGPSSLH GGVHVL+ADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW
Sbjct:  174 SATKIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTNKFENIRYGLVQARVGWSMINGTGYQFGPSSLHVGGVHVLLADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 304          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A6I6ADS1_9PLAN (DUF1559 domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A6I6ADS1_9PLAN)

HSP 1 Score: 254 bits (649), Expect = 4.780e-83
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTYKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S T+IRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAAT  KFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNP TISSATSTYFRLAVINDGQVIGEW
Sbjct:  175 SKTQIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATPNKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPGTISSATSTYFRLAVINDGQVIGEW 305          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A517VPM0_9PLAN (Type II secretion system protein G n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPM0_9PLAN)

HSP 1 Score: 196 bits (497), Expect = 4.580e-60
Identity = 99/132 (75.00%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVT-PCAATTYKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S+ +IRDITDG SNT AF+ERTTVND+ GTNH G +WAGVT PC A    F+NIR   +QARVGWSMING+GYQFGPSSLH GG H L+ADG VRF SEN+DASNNP+TISSATSTYF+LAVINDGQVIGE+
Sbjct:  173 SNVKIRDITDGTSNTIAFSERTTVNDSNGTNHRGGVWAGVTHPCPAN--GFDNIRNFTIQARVGWSMINGSGYQFGPSSLHVGGAHFLLADGRVRFVSENIDASNNPTTISSATSTYFKLAVINDGQVIGEF 302          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A517RN30_9PLAN (Putative major pilin subunit n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RN30_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 2.190e-55
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVT-PCAATTYKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S TRIRDITDG SNT AFTERTTVND+AGTNH G +WAGVT PC A    F+NIR   +Q RVGWSMINGTGYQFGPSSLH GGVH L+ADG VRF SEN+DAS+N +  ++ T  YF+L+VINDGQVIGE+
Sbjct:  173 SRTRIRDITDGTSNTVAFTERTTVNDSAGTNHRGGVWAGVTHPCPAN--GFDNIRNFTIQHRVGWSMINGTGYQFGPSSLHVGGVHYLLADGQVRFVSENIDASSNSTPPTATTGIYFKLSVINDGQVIGEF 302          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A352DRV3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A352DRV3_9PLAN)

HSP 1 Score: 151 bits (382), Expect = 6.990e-43
Identity = 83/133 (62.41%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAA--GT-NHIGSIWAGVT-PCAATTYKFENIRYGLVQARVGWSMINGTG-YQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVI 384
            S TRIRDI DG S TFAF+E+T+V+  +  GT NH+G++WAGVT PC+ T   FEN+R+   QARVGWSMING G YQFGP+SLH GGVH LMADGAVRF +EN+DA+NN +      S YF LA  NDGQ I
Sbjct:  157 STTRIRDIVDGTSKTFAFSEKTSVSRQSPFGTVNHVGAVWAGVTHPCSGTPNGFENVRFAQTQARVGWSMINGLGTYQFGPASLHPGGVHCLMADGAVRFVNENIDAANNTTQ---PKSVYFLLAERNDGQAI 286          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A847GM26_9BACT (DUF1559 domain-containing protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GM26_9BACT)

HSP 1 Score: 103 bits (256), Expect = 5.260e-24
Identity = 62/132 (46.97%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   22 ITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTP---CAATT-----YKFENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            I DG SNTFAFTER T N    +  IG  WAG T     A+ T     Y +E IR+ +V  R  WS+IN   + +GPSS H GG H L+ADGAVRF SEN+DA++N + +    STY +L   NDG  +G +
Sbjct:  180 ILDGTSNTFAFTERAT-NPKYPSYWIGGAWAGSTIQVYAASPTWYCGNYGYEGIRWYMVATRYSWSIINSPNWGYGPSSGHPGGCHFLLADGAVRFVSENIDAASNTAPM----STYQKLGCRNDGDTVGTY 306          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A3B1D606_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D606_9ZZZZ)

HSP 1 Score: 84.7 bits (208), Expect = 5.930e-18
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTYKFENIRYGLVQARVGWSMINGTGYQ--FGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S T+IRDITDG SN F  +ERTT  D  G   IG+I  G         ++  +   ++      ++ING+  Q  + PSS H GG H L ADG VRF SEN+DA           +TY RL+ INDG V+GE+
Sbjct:   73 SRTKIRDITDGTSNVFLCSERTTKGDPKGALWIGTINGG---------RYYVLFPAIITGDT--TLINGSSVQVNYSPSSTHVGGCHFLFADGRVRFLSENIDA-----------TTYQRLSAINDGFVLGEY 183          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A813ASJ8_SYMMI (XcpT_54 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813ASJ8_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 3.940e-16
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGT--------NHIGSIWAGVTPCAATT------YKFENIRYGLVQARVGWSMINGTGYQFGP----SSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S TRIRDITDG SNT   +ERTT ++ +GT        N  G +W G    ++ +      Y F+   +G   +     +IN +   +G     SS H GGVH+L+ DG VRF SENM +        S TSTY++L   + G+V+GE+
Sbjct:  481 SKTRIRDITDGTSNTILVSERTTKSEGSGTTGCGGSACNWAGGLWVGPRYTSSMSTWHPGMYHFDVSNFGGANSTY---LINSSAATWGDDWTASSAHVGGVHMLLCDGQVRFISENMSSG-------STTSTYYQLVTRSGGEVVGEF 619          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: A0A517VL33_9PLAN (Type II secretion system protein G n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VL33_9PLAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.120e-15
Identity = 57/146 (39.04%), Postives = 77/146 (52.74%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGT--------NHIGSIWAGVTPCAAT-TYKFENIRYGLVQARVGWS--MINGTGYQFGP----SSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S T+IRDITDG SNT   +ERTT ND + +        N  G +W G    ++T T+    + Y +     G S  +INGT   +G     SS H GGVH+L  DG VRF SENM +  +        +TY +L   N G+V+GE+
Sbjct:  185 SATKIRDITDGTSNTVLVSERTTQNDGSNSTNCGGTACNWQGGLWIGPRYTSSTSTWHPGVLHYDVTNFGGGNSTYLINGTSASWGDDWCASSSHVGGVHMLFTDGRVRFVSENMSSGGS-------NTTYHKLVTRNGGEVVGEF 323          
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Match: D5SX15_PLAL2 (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Planctopirus TaxID=1649480 RepID=D5SX15_PLAL2)

HSP 1 Score: 80.5 bits (197), Expect = 2.050e-15
Identity = 59/133 (44.36%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTYKFENIRYGLVQAR--VGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENMDASNNPSTISSATSTYFRLAVINDGQVIGEW 393
            S TRIRD+TDG SNT   TER      + T   G IWAG +   AT     N    LV+A     W +I GT     P+S H GGVH +MADG+VRF SEN D            +TY RL  + DGQV+GE+
Sbjct:  201 SATRIRDVTDGTSNTLMVTERLYDGGDSETRR-GGIWAGRSS-GATNANSGNKYSNLVRAENLPDW-LIKGTNNN-APTSFHTGGVHFVMADGSVRFLSENTDG-----------NTYQRLGQMADGQVLGEF 318          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101588.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518AEP3_9PLAN4.630e-8396.18Type II secretion system protein G n=6 Tax=Gimesia... [more]
A0A6I6ADS1_9PLAN4.780e-8396.18DUF1559 domain-containing protein n=4 Tax=Planctom... [more]
A0A517VPM0_9PLAN4.580e-6075.00Type II secretion system protein G n=1 Tax=Gimesia... [more]
A0A517RN30_9PLAN2.190e-5571.21Putative major pilin subunit n=1 Tax=Gimesia alba ... [more]
A0A352DRV3_9PLAN6.990e-4362.41Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A847GM26_9BACT5.260e-2446.97DUF1559 domain-containing protein n=1 Tax=Candidat... [more]
A0A3B1D606_9ZZZZ5.930e-1842.11Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A813ASJ8_SYMMI3.940e-1637.58XcpT_54 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A517VL33_9PLAN1.120e-1539.04Type II secretion system protein G n=6 Tax=Plancto... [more]
D5SX15_PLAL22.050e-1544.36Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101588contigM-pyrifera_M_contig101588:272..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog521674.Plim_3825
KEGG koko:K02456
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:N_methyl_2
EggNOG OGs2J2TU@203682,COG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.5181286-CDS-M-pyrifera_M_contig101588:271..6671622815514.5181286-CDS-M-pyrifera_M_contig101588:271..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101588 272..667 -
1692277445.5751145-CDS-M-pyrifera_M_contig101588:271..6671692277445.5751145-CDS-M-pyrifera_M_contig101588:271..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101588 272..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101588.331.1prot_M-pyrifera_M_contig101588.331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101588 272..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101588.331.1

>prot_M-pyrifera_M_contig101588.331.1 ID=prot_M-pyrifera_M_contig101588.331.1|Name=mRNA_M-pyrifera_M_contig101588.331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
SHTRIRDITDGLSNTFAFTERTTVNDAAGTNHIGSIWAGVTPCAATTYKF
ENIRYGLVQARVGWSMINGTGYQFGPSSLHEGGVHVLMADGAVRFASENM
DASNNPSTISSATSTYFRLAVINDGQVIGEW*
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mRNA from alignment at M-pyrifera_M_contig101588:272..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101588.331.1 ID=mRNA_M-pyrifera_M_contig101588.331.1|Name=mRNA_M-pyrifera_M_contig101588.331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig101588:272..667- (Macrocystis pyrifera P11B4 male)
AGTCATACCCGGATCCGCGACATTACCGACGGGCTCTCCAACACGTTTGC GTTCACAGAACGAACCACCGTCAACGACGCCGCCGGCACGAACCACATCG GTTCGATCTGGGCAGGAGTCACTCCCTGTGCTGCGACTACCTACAAATTC GAAAACATTCGTTACGGTCTGGTTCAGGCACGTGTCGGCTGGTCCATGAT CAACGGCACCGGTTACCAGTTTGGTCCCAGCAGTCTGCATGAGGGCGGCG TGCATGTGCTCATGGCAGATGGCGCTGTTCGCTTCGCCAGTGAAAACATG GATGCTTCCAATAATCCGAGCACCATTTCTTCCGCAACCAGCACTTACTT CCGACTGGCCGTCATCAACGATGGTCAGGTCATCGGTGAATGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101588:272..667-

>mRNA_M-pyrifera_M_contig101588.331.1 ID=mRNA_M-pyrifera_M_contig101588.331.1|Name=mRNA_M-pyrifera_M_contig101588.331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig101588:272..667- (Macrocystis pyrifera P11B4 male)
AGTCATACCCGGATCCGCGACATTACCGACGGGCTCTCCAACACGTTTGC
GTTCACAGAACGAACCACCGTCAACGACGCCGCCGGCACGAACCACATCG
GTTCGATCTGGGCAGGAGTCACTCCCTGTGCTGCGACTACCTACAAATTC
GAAAACATTCGTTACGGTCTGGTTCAGGCACGTGTCGGCTGGTCCATGAT
CAACGGCACCGGTTACCAGTTTGGTCCCAGCAGTCTGCATGAGGGCGGCG
TGCATGTGCTCATGGCAGATGGCGCTGTTCGCTTCGCCAGTGAAAACATG
GATGCTTCCAATAATCCGAGCACCATTTCTTCCGCAACCAGCACTTACTT
CCGACTGGCCGTCATCAACGATGGTCAGGTCATCGGTGAATGGTAAAGTC
ATACCCGGATCCGCGACATTACCGACGGGCTCTCCAACACGTTTGCGTTC
ACAGAACGAACCACCGTCAACGACGCCGCCGGCACGAACCACATCGGTTC
GATCTGGGCAGGAGTCACTCCCTGTGCTGCGACTACCTACAAATTCGAAA
ACATTCGTTACGGTCTGGTTCAGGCACGTGTCGGCTGGTCCATGATCAAC
GGCACCGGTTACCAGTTTGGTCCCAGCAGTCTGCATGAGGGCGGCGTGCA
TGTGCTCATGGCAGATGGCGCTGTTCGCTTCGCCAGTGAAAACATGGATG
CTTCCAATAATCCGAGCACCATTTCTTCCGCAACCAGCACTTACTTCCGA
CTGGCCGTCATCAACGATGGTCAGGTCATCGGTGAATGGTAA
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