Homology
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
D3Q9A0_STANL (Acyl-CoA dehydrogenase domain protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / CIP 108903 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) TaxID=446470 RepID=D3Q9A0_STANL)
HSP 1 Score: 139 bits (349), Expect = 3.340e-37
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
+++RANIQDWIAEARI+ID ARLLTL+TA +MDT G++AAA E+S IKV + A VIDRAIQV G AGV+DD PLA +A LR+LR+ADGPDEVH AIARRELR+
Sbjct: 293 LSTRANIQDWIAEARIEIDMARLLTLKTAYLMDTMGNQAAATEISAIKVAAPQAALNVIDRAIQVHGGAGVTDDFPLAMAWAHLRALRLADGPDEVHKRAIARRELRK 400
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A857L457_9ACTN (Acyl-CoA dehydrogenase n=4 Tax=Gordonia TaxID=2053 RepID=A0A857L457_9ACTN)
HSP 1 Score: 138 bits (347), Expect = 6.340e-37
Identity = 73/112 (65.18%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAA 336
+A RANIQDWIAEARIDI+ RLLTL+ A +MDT G+K AA E++ IKV A ++DRAIQVFG GV+DDVPLA YA LR+LR+ADGPDEVH AIARRELR A
Sbjct: 275 LADRANIQDWIAEARIDIEMVRLLTLKAAHMMDTVGNKQAATEIAAIKVAAPNVALKIVDRAIQVFGGMGVTDDVPLAAFYAHLRTLRLADGPDEVHKRAIARRELRPYVKA 386
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A6G3S843_9ACTN (Acyl-CoA dehydrogenase n=5 Tax=Streptomyces TaxID=1883 RepID=A0A6G3S843_9ACTN)
HSP 1 Score: 138 bits (347), Expect = 6.680e-37
Identity = 74/113 (65.49%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAAR 339
VA RANIQDWIAE+RI+ID ARLLTL+ A +MDT G+K A E++ IKV A V+DRAIQV G AGVSDD PLA MYA LR+LR+ADGPDEVH IARRELR++ R
Sbjct: 291 VADRANIQDWIAESRIEIDMARLLTLKAAYLMDTVGNKQARTEIAAIKVAAPEVALKVVDRAIQVHGGAGVSDDFPLASMYAHLRTLRLADGPDEVHKRTIARRELRRRQTER 403
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A3D1L503_9MICO (Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Janibacter terrae TaxID=103817 RepID=A0A3D1L503_9MICO)
HSP 1 Score: 130 bits (327), Expect = 1.190e-36
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQA 330
+A+RANI DW+AE+RI+I+ ARLLTL+ A +MDT G+K A E++ IKV A VIDRAIQV G GVSDD PLA YA +R+LR+ADGPDEVH M IARRE R+++
Sbjct: 33 IANRANIMDWVAESRIEIEMARLLTLKAAHMMDTVGNKVARTEIAAIKVAAPNVALKVIDRAIQVHGGGGVSDDFPLAMWYAHMRTLRLADGPDEVHKMTIARREYRRRS 142
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A7W0L109_9ACTN (Acyl-CoA dehydrogenase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0L109_9ACTN)
HSP 1 Score: 137 bits (344), Expect = 1.810e-36
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
VA R+NI DWIAEARID++ RLLT +TA +MDT G+KAAA E+S IKV A ++DRAIQV GA GV DD PLA MYA LR+LR+ADGPDEVH M IARRELR+
Sbjct: 291 VAERSNIMDWIAEARIDLEMVRLLTFKTAWMMDTVGNKAAAVEISAIKVAAPNVALRIVDRAIQVHGAGGVCDDFPLASMYAHLRTLRLADGPDEVHKMTIARRELRK 398
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A6I1YRY2_9ACTN ((R)-benzylsuccinyl-CoA dehydrogenase n=2 Tax=Streptomyces sp. RB17 TaxID=2585197 RepID=A0A6I1YRY2_9ACTN)
HSP 1 Score: 137 bits (344), Expect = 1.840e-36
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAAR 339
+A RANIQDWIAEARI+ID ARLLTL+ A +MDT G+K A E++ IKV A VIDRAIQV G AGVSDD PLA MYA LR+LR+ADGPDEVH IA RELR++ A R
Sbjct: 291 LAERANIQDWIAEARIEIDMARLLTLQAAHLMDTVGNKEARTEIAAIKVAAPDIALRVIDRAIQVHGGAGVSDDFPLASMYAHLRTLRLADGPDEVHKRTIAHRELRRREAER 403
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A538KX70_9ACTN (Acyl-CoA dehydrogenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KX70_9ACTN)
HSP 1 Score: 137 bits (344), Expect = 2.250e-36
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQA 330
VA+R+N+QDWIAE+RI+I+ ARLLT++TA +MDT G+K A E++ IKV + A VIDRAIQV G GVSDD PLA MYA +R+LR+ADGPDEVH M IARRELR+ A
Sbjct: 292 VATRSNVQDWIAESRIEIEMARLLTMKTAWLMDTVGNKHARTEIAAIKVAAPQVALKVIDRAIQVHGGGGVSDDFPLASMYAHMRTLRLADGPDEVHKMTIARRELRRHA 401
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
UPI0016670985 (acyl-CoA dehydrogenase family protein n=1 Tax=Gordonia jinhuaensis TaxID=1517702 RepID=UPI0016670985)
HSP 1 Score: 137 bits (344), Expect = 2.360e-36
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
+A RANIQDWIAEARIDI+ RLLTL+ A +MDT G+KAAA E++ IKV A +IDRAIQV G AGV+DD PLA YA +R+LR+ADGPDEVH AIARRELR+
Sbjct: 292 LAERANIQDWIAEARIDIEMVRLLTLKAAEMMDTVGNKAAATEIAAIKVAAPNVALKIIDRAIQVHGGAGVTDDFPLAMAYAHIRTLRLADGPDEVHKRAIARRELRK 399
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
H6MTC1_GORPV (Putative acyl-CoA dehydrogenase n=6 Tax=Gordonia TaxID=2053 RepID=H6MTC1_GORPV)
HSP 1 Score: 136 bits (343), Expect = 3.360e-36
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAA 336
+A RANIQDWIAEARIDI+ RLLTL+ A +MDT G+KAAA E++ IKV A +IDRAIQV G AGV+DD PLA YA LR+LR+ADGPDEVH AIARRELR A
Sbjct: 292 LADRANIQDWIAEARIDIEMVRLLTLKAAYMMDTVGNKAAATEIAAIKVAAPNMALKIIDRAIQVHGGAGVTDDFPLAMAYAHLRTLRLADGPDEVHKRAIARRELRSYREA 403
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match:
A0A2Z3YWZ7_9CORY ((R)-benzylsuccinyl-CoA dehydrogenase n=4 Tax=Corynebacterium TaxID=1716 RepID=A0A2Z3YWZ7_9CORY)
HSP 1 Score: 136 bits (342), Expect = 3.870e-36
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
++ R NI+DWIAEARI I++ARLLT++ A +MDT G+KAA E++ IKV RTA ++DRAIQVFG GV+DD PLA+MYA LR+LR+ADGPDEVHLM IAR ELR+
Sbjct: 293 LSDRDNIRDWIAEARISIESARLLTMKAAWMMDTVGNKAARQEIAAIKVLAPRTALRIVDRAIQVFGGEGVTDDTPLAQMYAGLRTLRLADGPDEVHLMTIARTELRR 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90 )
Total hits: 25
0 1 Expect = 3.34e-37 / Id = 68.52 Expect = 6.34e-37 / Id = 65.18 Expect = 6.68e-37 / Id = 65.49 Expect = 1.19e-36 / Id = 60.91 Expect = 1.81e-36 / Id = 66.67 Expect = 1.84e-36 / Id = 66.37 Expect = 2.25e-36 / Id = 64.55 Expect = 2.36e-36 / Id = 66.67 Expect = 3.36e-36 / Id = 66.07 Expect = 3.87e-36 / Id = 64.81 Sequence D3Q9A0_STANL A0A857L457_9ACTN A0A6G3S843_9ACTN A0A3D1L503_9MICO A0A7W0L109_9ACTN A0A6I1YRY2_9ACTN A0A538KX70_9ACTN UPI0016670985 H6MTC1_GORPV A0A2Z3YWZ7_9CORY
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria
Seed ortholog score 140.2
Seed ortholog evalue 6e-31
Seed eggNOG ortholog 1463921.JODF01000001_gene3932
KEGG rclass RC00052,RC00068,RC00076,RC00095,RC00148,RC00246
KEGG ko ko:K00249
KEGG Reaction R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754
KEGG Pathway ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320
KEGG Module M00013,M00036,M00087
Hectar predicted targeting category other localisation
EggNOG free text desc. acyl-CoA dehydrogenase
EggNOG OGs 2GKQI@201174,COG1960@1,COG1960@2
EC 1.3.8.7
COG Functional cat. I
Best tax level Actinobacteria
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko00002,ko01000
Exons 1
Model size 342
Cds size 342
Stop 1
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815510.7541287-CDS-M-pyrifera_M_contig101312:321..663 1622815510.7541287-CDS-M-pyrifera_M_contig101312:321..663 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig101312 322..663 -
1692277444.2085476-CDS-M-pyrifera_M_contig101312:321..663 1692277444.2085476-CDS-M-pyrifera_M_contig101312:321..663 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig101312 322..663 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101312.276.1
>prot_M-pyrifera_M_contig101312.276.1 ID=prot_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVH VMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMA IARRELRQQAAAR* back to top mRNA from alignment at M-pyrifera_M_contig101312:322..663-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101312.276.1 ID=mRNA_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig101312:322..663- (Macrocystis pyrifera P11B4 male)GTCGCCTCGCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGA
CATCGACGCCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACA
CCGACGGCGACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCAT
GTGATGCGGACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGG
GGCGGCCGGCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGC
TCCGATCGTTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCG
ATCGCTCGCCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGA back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101312:322..663-
>mRNA_M-pyrifera_M_contig101312.276.1 ID=mRNA_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig101312:322..663- (Macrocystis pyrifera P11B4 male) GTCGCCTCGCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGA CATCGACGCCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACA CCGACGGCGACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCAT GTGATGCGGACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGG GGCGGCCGGCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGC TCCGATCGTTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCG ATCGCTCGCCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGAGTCGCCTC GCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGACATCGACG CCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACACCGACGGC GACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCATGTGATGCG GACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGGGGCGGCCG GCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGCTCCGATCG TTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCGATCGCTCG CCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGA back to top