mRNA_M-pyrifera_M_contig101245.262.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101245.262.1
Unique NamemRNA_M-pyrifera_M_contig101245.262.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A1G9JDS8_9FLAO (Uncharacterized protein n=1 Tax=Kriegella aquimaris TaxID=192904 RepID=A0A1G9JDS8_9FLAO)

HSP 1 Score: 57.4 bits (137), Expect = 8.900e-10
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   28 EEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLEE 159
            E+FE I  EI S+ SPVG DA KTH++IL KL NIEERL RLE+
Sbjct:    5 EQFEAIAKEIHSDTSPVGIDAKKTHILILQKLMNIEERLDRLEK 48          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A5D3YNH0_9BACT (Uncharacterized protein n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YNH0_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   13 MDLSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            + ++ EE+E I ++I SEDSPVG DA KTHV+IL+KL NIE RL  LE
Sbjct:    3 LQINDEEYEEILSQIESEDSPVGIDAGKTHVLILDKLLNIERRLEALE 50          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A3XIX3_LEEBM (Uncharacterized protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A3XIX3_LEEBM)

HSP 1 Score: 56.2 bits (134), Expect = 2.550e-9
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   28 EEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            E++E IE EI S++SPVG DA KTH++I++KL  IEERLT++E
Sbjct:    5 EQYETIEKEIHSDESPVGIDAKKTHIIIIHKLMKIEERLTQIE 47          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A6M1SMU2_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SMU2_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.990e-9
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   13 MDLSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLEELAEDK 174
            +++S +E+E +  EI+SEDSPVG DA KTHV+IL KL  IE RL  LE    D+
Sbjct:    3 LEISDKEYEELLNEIKSEDSPVGIDAGKTHVLILYKLLQIESRLEHLESYFHDE 56          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A7Y2DJA4_9FLAO (Uncharacterized protein n=1 Tax=Pricia sp. TaxID=2268138 RepID=A0A7Y2DJA4_9FLAO)

HSP 1 Score: 55.5 bits (132), Expect = 5.150e-9
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   28 EEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            E+++ I  EI S++SPVG DA KTH++IL KL NIEERL RLE
Sbjct:    5 EQYDAIAKEIHSDNSPVGIDAKKTHILILQKLINIEERLARLE 47          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: UPI0014303104 (hypothetical protein n=1 Tax=Aquimarina TaxID=290174 RepID=UPI0014303104)

HSP 1 Score: 54.3 bits (129), Expect = 1.480e-8
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   19 LSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            +  E++E I  EI S+ SPVG DA KTH++IL KL  IEERL RLE
Sbjct:    2 IDKEQYESIAKEIHSDTSPVGIDAKKTHILILQKLIKIEERLDRLE 47          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A1M5F7K6_9BACT (Uncharacterized protein n=1 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M5F7K6_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.690e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 MDLSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLEE 159
            +D+  E+F  I  +I+S+DSPVG DA KTHV+IL KL +IE RL  LE+
Sbjct:    3 LDIPEEQFREILEQIKSDDSPVGIDAGKTHVLILQKLLDIESRLEELEK 51          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A3E0NXN9_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NXN9_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.810e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   13 MDLSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            M +  E + RI   I S++SPVG DA KTH++IL+KL  IEERL RLE
Sbjct:    1 MQIDDETYRRIGELIESDESPVGIDAKKTHILILHKLQQIEERLARLE 48          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A7Y3A0X7_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y3A0X7_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 2.050e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   34 FERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLEE 159
            +E+I  EI S+ SPVG DA KTH++I+ KL  IEERL+RLEE
Sbjct:    6 YEKIALEIESDTSPVGIDAKKTHIIIIEKLITIEERLSRLEE 47          
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Match: A0A835X551_9ARCH (Uncharacterized protein n=1 Tax=Nitrosopumilales archaeon TaxID=2026768 RepID=A0A835X551_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 3.190e-8
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   13 MDLSSEEFERIEAE--IRSEDSPVGFDALKTHVMILNKLGNIEERLTRLE 156
            M+L  E+ ++IE E  I SEDSPVG DA KTHV+I+NKL  IE+RL +LE
Sbjct:    1 MNLDVEDDKKIEIEKAITSEDSPVGIDAKKTHVIIINKLVEIEKRLDKLE 50          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101245.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G9JDS8_9FLAO8.900e-1065.91Uncharacterized protein n=1 Tax=Kriegella aquimari... [more]
A0A5D3YNH0_9BACT1.040e-960.42Uncharacterized protein n=1 Tax=Fodinibius salinus... [more]
A3XIX3_LEEBM2.550e-960.47Uncharacterized protein n=2 Tax=Flavobacteriaceae ... [more]
A0A6M1SMU2_9BACT2.990e-953.70Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
A0A7Y2DJA4_9FLAO5.150e-962.79Uncharacterized protein n=1 Tax=Pricia sp. TaxID=2... [more]
UPI00143031041.480e-858.70hypothetical protein n=1 Tax=Aquimarina TaxID=2901... [more]
A0A1M5F7K6_9BACT1.690e-855.10Uncharacterized protein n=1 Tax=Aliifodinibius ros... [more]
A0A3E0NXN9_9BACT1.810e-856.25Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7Y3A0X7_9FLAO2.050e-861.90Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A835X551_9ARCH3.190e-860.00Uncharacterized protein n=1 Tax=Nitrosopumilales a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101245contigM-pyrifera_M_contig101245:205..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.9366138-CDS-M-pyrifera_M_contig101245:204..3691622815509.9366138-CDS-M-pyrifera_M_contig101245:204..369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101245 205..369 -
1692277443.8674438-CDS-M-pyrifera_M_contig101245:204..3691692277443.8674438-CDS-M-pyrifera_M_contig101245:204..369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101245 205..369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.9488394-UTR-M-pyrifera_M_contig101245:369..3811622815509.9488394-UTR-M-pyrifera_M_contig101245:369..381Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101245 370..381 -
1692277443.8772693-UTR-M-pyrifera_M_contig101245:369..3811692277443.8772693-UTR-M-pyrifera_M_contig101245:369..381Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101245 370..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101245.262.1prot_M-pyrifera_M_contig101245.262.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101245 205..369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101245.262.1

>prot_M-pyrifera_M_contig101245.262.1 ID=prot_M-pyrifera_M_contig101245.262.1|Name=mRNA_M-pyrifera_M_contig101245.262.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MDLSSEEFERIEAEIRSEDSPVGFDALKTHVMILNKLGNIEERLTRLEEL
AEDK*
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mRNA from alignment at M-pyrifera_M_contig101245:205..381-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101245.262.1 ID=mRNA_M-pyrifera_M_contig101245.262.1|Name=mRNA_M-pyrifera_M_contig101245.262.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig101245:205..381- (Macrocystis pyrifera P11B4 male)
AGGGGCTTAGTAATGGACCTATCATCAGAAGAATTCGAACGAATCGAGGC AGAAATTCGGTCCGAAGATAGTCCCGTGGGTTTCGACGCGCTCAAGACCC ACGTCATGATCCTGAATAAGCTCGGTAATATCGAAGAACGGCTCACTCGC CTTGAAGAGCTCGCGGAAGACAAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101245:205..381-

>mRNA_M-pyrifera_M_contig101245.262.1 ID=mRNA_M-pyrifera_M_contig101245.262.1|Name=mRNA_M-pyrifera_M_contig101245.262.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig101245:205..381- (Macrocystis pyrifera P11B4 male)
ATGGACCTATCATCAGAAGAATTCGAACGAATCGAGGCAGAAATTCGGTC
CGAAGATAGTCCCGTGGGTTTCGACGCGCTCAAGACCCACGTCATGATCC
TGAATAAGCTCGGTAATATCGAAGAACGGCTCACTCGCCTTGAAGAGCTC
GCGGAAGACAAATAGATGGACCTATCATCAGAAGAATTCGAACGAATCGA
GGCAGAAATTCGGTCCGAAGATAGTCCCGTGGGTTTCGACGCGCTCAAGA
CCCACGTCATGATCCTGAATAAGCTCGGTAATATCGAAGAACGGCTCACT
CGCCTTGAAGAGCTCGCGGAAGACAAATAG
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