mRNA_M-pyrifera_M_contig101047.229.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101047.229.1
Unique NamemRNA_M-pyrifera_M_contig101047.229.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A354B8D3_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B8D3_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 5.000e-41
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 ADGPPECVGERLEPFVEVLDDRWTGYAHRAGVDVDVSAST-MGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            A+ P +  G+RLEP V  LDDRW GYA RAG D+++ A   + HPVVW SLANR+FA +LVDG WVHTRS VRHL     G   V+E W VDRF+T+ G RAVVD+R+TVDG  V  VEHEAI+ L
Sbjct:  106 AETPSKASGKRLEPLVVELDDRWVGYAARAGEDLELYAGQQLVHPVVWPSLANRVFAAQLVDGAWVHTRSRVRHLGIAAPGDAVVIESWEVDRFSTRGGERAVVDLRMTVDGRPVCAVEHEAIVRL 231          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E0ZS34_9ACTN (Enoyl-CoA hydratase 2 n=3 Tax=root TaxID=1 RepID=A0A2E0ZS34_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 1.810e-32
Identity = 67/126 (53.17%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGPP-ECVGERLEPFVEVLDDRWTGYAHRAGVDVDV-SASTMGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            DGP    + + LEP VE L   W GY  R G D+ + S + + HP VW +LAN +  R LV+GPWVHTRS +RH      GATA+VE  VVDRF T++G+RAV+D+RI+VDGELVA +EHEA++ L
Sbjct:  114 DGPSTRPLHQPLEPQVEALXGEWDGYGLRTGDDLGLYSEAGIIHPAVWPALANSVVKRNLVEGPWVHTRSRIRHHGTAQVGATALVEAVVVDRFETRSGSRAVLDIRISVDGELVASLEHEALVSL 239          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A7C7SBQ3_9ACTN (Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7C7SBQ3_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 5.440e-31
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   22 VGERLEPFVEVLDDRWTGYAHRAGVDVDVSAST-MGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            + E+LEP VE L   W  Y  RAG D+ + A   + HP VW +LAN +  R LVDG W+HTRS +RH      GATA V+  VVDRF T++G RAV+DV I+VDG LVA +EHEAI+ L
Sbjct:  121 LNEQLEPHVEPLTGGWADYGLRAGDDLGIYAEAGIVHPAVWPALANGVMTRHLVDGAWIHTRSRIRHHGIARVGATATVQATVVDRFETRSGTRAVLDVTISVDGALVATIEHEAIVAL 239          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E5P2H9_9ACTN (Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5P2H9_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 6.420e-31
Identity = 62/119 (52.10%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   22 VGERLEPFVEVLDDRWTGYAHRAGVDVDVSAST-MGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            + ERL   VE L DRWT YA RAG D+ + A   + HP VW +LAN +  R LV+GPW+HT S + H +A   G +A+VE  V+DRF T++G+RAVVDVRI+VDG  V  +EHEA++ L
Sbjct:  127 LSERLPDHVEPLVDRWTNYAERAGADLSLCADAGVVHPSVWPALANGVITRHLVEGPWIHTGSRIVHHAAAPVGVSALVEATVIDRFNTRSGSRAVVDVRISVDGLPVVTIEHEALVSL 245          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E7X7Y1_9ACTN (Enoyl-CoA hydratase 2 n=3 Tax=root TaxID=1 RepID=A0A2E7X7Y1_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 3.030e-27
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   34 LEPFVEVLDDRWTGYAHRAGVDVDV-SASTMGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            L+  VE L   W  Y  RAG D+ + S + + HP VW +LAN +  R LV GPWVHTRS +RH    T GATAV++  VV+RF T++G+RAV++V+I+VDGE VA +EHEA++ L
Sbjct:  124 LQRHVEPLVGEWDDYGLRAGDDLGLYSEAGIVHPAVWTALANSVVKRNLVAGPWVHTRSHIRHHCTATVGATAVIDAVVVNRFETRSGSRAVIEVQISVDGEPVASLEHEALVSL 238          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E5ZEY0_9ACTN (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E5ZEY0_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 1.180e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   22 VGERLEPFVEVLDDRWTGYAHRAGVDVDVSAST-MGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
             GE L   +E LD     YA RAG D  + A   + HP  W +LAN +F R LVDGPW+HTRS + H +AV  G + +VE  VVDR   + G R VVDV +++DG  VA V HEA++ L
Sbjct:  122 AGEVLPARLEALDGAHADYARRAGEDFGLYAQEGLVHPCAWPTLANAVFVRHLVDGPWIHTRSRIVHHAAVAVGESVLVEATVVDRLEARRGTRVVVDVEVSLDGIPVASVRHEALVHL 240          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E9JBB7_9ACTN (Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9JBB7_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 2.840e-23
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   28 ERLEPFVEVLDDRWTGYAHRAGVDVDVSASTMG--HPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            E LE     L D W+ Y  RAG D ++  S +G  HP VW SLAN +  + LV+G WVHTRS + H   V  G+TA VE  V++RF T+ G RA+VDV ++VDGE +  +EHEAI+ L
Sbjct:  121 ELLETEEIHLTDEWSDYGQRAGDDHEIY-SELGVIHPAVWPSLANYIVEKNLVNGAWVHTRSKICHHGLVQIGSTATVESSVINRFKTRTGNRAIVDVSVSVDGEKLIDIEHEAIVSL 237          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A2E8X6D8_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E8X6D8_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 3.300e-21
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  127 HPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            HP +W ++AN +  R LVDG W+HTRS + H  +V  G+ A VE +VV RF T+AG R V++V ITVDGE VA VEHEAII L
Sbjct:   11 HPAIWPAVANHVVERNLVDGAWIHTRSKIFHHDSVQIGSIATVESYVVRRFETRAGDRVVINVSITVDGEKVADVEHEAIISL 93          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A6I3AGC9_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3AGC9_9ACTN)

HSP 1 Score: 92.0 bits (227), Expect = 2.860e-20
Identity = 58/122 (47.54%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   16 ECVGERLEPFVEVLDDRW-TGYAHRAGVDVDVSAST-MGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            E  GE L      LDD     YA RAG D+D+     + HP VW SLAN +F++ELV GPW+HTRS + H +   A A   +   VVDRF  ++G RAVVD+ I  DG +V  +EHEAII L
Sbjct:  121 ERPGEDLPVHRFALDDNHGPDYAVRAGDDLDIFVERGIVHPAVWPSLANGVFSKELVRGPWIHTRSRITHHALARANADIEITSRVVDRF-VRSGERAVVDMTIRADGAIVCSIEHEAIIDL 241          
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Match: A0A3C2AXV2_9ACTN (Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AXV2_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 7.890e-19
Identity = 58/119 (48.74%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   25 GERLEPFVEVLDDRW-TGYAHRAGVDVDV-SASTMGHPVVWISLANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGARAVVDVRITVDGELVAVVEHEAIIGL 375
            GE L      L   W + Y  RAG   D+     + HP VW +LAN L   E+  G WVHTRS VRH     AGATA V G VV RF    G RAV+DV IT+DG++VA +EHEAI+ L
Sbjct:  162 GEALPAKRVELRGEWGSDYGARAGDPFDLYQQHGVVHPAVWPALANHLVHTEVARGSWVHTRSIVRHHGLAPAGATAEVRGTVVRRFQAH-GERAVLDVHITIDGQVVASLEHEAIVAL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101047.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A354B8D3_9ACTN5.000e-4159.52Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A2E0ZS34_9ACTN1.810e-3253.17Enoyl-CoA hydratase 2 n=3 Tax=root TaxID=1 RepID=A... [more]
A0A7C7SBQ3_9ACTN5.440e-3152.94Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiia bacte... [more]
A0A2E5P2H9_9ACTN6.420e-3152.10Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae ba... [more]
A0A2E7X7Y1_9ACTN3.030e-2751.30Enoyl-CoA hydratase 2 n=3 Tax=root TaxID=1 RepID=A... [more]
A0A2E5ZEY0_9ACTN1.180e-2347.06Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2E9JBB7_9ACTN2.840e-2348.31Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae ba... [more]
A0A2E8X6D8_9CHLR3.300e-2156.63Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A6I3AGC9_9ACTN2.860e-2047.54Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A3C2AXV2_9ACTN7.890e-1948.74Enoyl-CoA hydratase 2 n=1 Tax=Acidimicrobiaceae ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101047contigM-pyrifera_M_contig101047:8..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.9763744-CDS-M-pyrifera_M_contig101047:7..3941622815507.9763744-CDS-M-pyrifera_M_contig101047:7..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101047 8..394 +
1692277442.867158-CDS-M-pyrifera_M_contig101047:7..3941692277442.867158-CDS-M-pyrifera_M_contig101047:7..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101047 8..394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101047.229.1prot_M-pyrifera_M_contig101047.229.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101047 8..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101047.229.1

>prot_M-pyrifera_M_contig101047.229.1 ID=prot_M-pyrifera_M_contig101047.229.1|Name=mRNA_M-pyrifera_M_contig101047.229.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
ADGPPECVGERLEPFVEVLDDRWTGYAHRAGVDVDVSASTMGHPVVWISL
ANRLFARELVDGPWVHTRSAVRHLSAVTAGATAVVEGWVVDRFATQAGAR
AVVDVRITVDGELVAVVEHEAIIGLVAG*
back to top

mRNA from alignment at M-pyrifera_M_contig101047:8..394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101047.229.1 ID=mRNA_M-pyrifera_M_contig101047.229.1|Name=mRNA_M-pyrifera_M_contig101047.229.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig101047:8..394+ (Macrocystis pyrifera P11B4 male)
GCCGATGGGCCACCGGAGTGTGTGGGCGAGCGTCTCGAGCCGTTCGTGGA AGTGCTCGATGATCGCTGGACGGGCTATGCCCACCGCGCCGGCGTCGACG TCGATGTCTCGGCGTCGACCATGGGGCACCCTGTGGTGTGGATCTCGCTC GCCAACCGCCTGTTCGCCCGCGAGCTGGTCGACGGGCCGTGGGTCCACAC CCGGAGCGCGGTGCGCCACCTCAGTGCGGTGACGGCCGGGGCGACGGCGG TCGTCGAAGGCTGGGTCGTGGACCGTTTCGCCACGCAGGCCGGGGCGCGC GCAGTGGTCGATGTGCGCATCACCGTCGACGGCGAGCTGGTTGCCGTGGT CGAACACGAGGCCATCATCGGGCTCGTCGCCGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101047:8..394+

>mRNA_M-pyrifera_M_contig101047.229.1 ID=mRNA_M-pyrifera_M_contig101047.229.1|Name=mRNA_M-pyrifera_M_contig101047.229.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig101047:8..394+ (Macrocystis pyrifera P11B4 male)
GCCGATGGGCCACCGGAGTGTGTGGGCGAGCGTCTCGAGCCGTTCGTGGA
AGTGCTCGATGATCGCTGGACGGGCTATGCCCACCGCGCCGGCGTCGACG
TCGATGTCTCGGCGTCGACCATGGGGCACCCTGTGGTGTGGATCTCGCTC
GCCAACCGCCTGTTCGCCCGCGAGCTGGTCGACGGGCCGTGGGTCCACAC
CCGGAGCGCGGTGCGCCACCTCAGTGCGGTGACGGCCGGGGCGACGGCGG
TCGTCGAAGGCTGGGTCGTGGACCGTTTCGCCACGCAGGCCGGGGCGCGC
GCAGTGGTCGATGTGCGCATCACCGTCGACGGCGAGCTGGTTGCCGTGGT
CGAACACGAGGCCATCATCGGGCTCGTCGCCGGGTGAGCCGATGGGCCAC
CGGAGTGTGTGGGCGAGCGTCTCGAGCCGTTCGTGGAAGTGCTCGATGAT
CGCTGGACGGGCTATGCCCACCGCGCCGGCGTCGACGTCGATGTCTCGGC
GTCGACCATGGGGCACCCTGTGGTGTGGATCTCGCTCGCCAACCGCCTGT
TCGCCCGCGAGCTGGTCGACGGGCCGTGGGTCCACACCCGGAGCGCGGTG
CGCCACCTCAGTGCGGTGACGGCCGGGGCGACGGCGGTCGTCGAAGGCTG
GGTCGTGGACCGTTTCGCCACGCAGGCCGGGGCGCGCGCAGTGGTCGATG
TGCGCATCACCGTCGACGGCGAGCTGGTTGCCGTGGTCGAACACGAGGCC
ATCATCGGGCTCGTCGCCGGGTGA
back to top