mRNA_M-pyrifera_M_contig101030.224.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101030.224.1
Unique NamemRNA_M-pyrifera_M_contig101030.224.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A0C9VNG7_SPHS4 (Exosome complex protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VNG7_SPHS4)

HSP 1 Score: 58.9 bits (141), Expect = 1.000e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREAENRK 264
            LE  +  + E LGPL   PL D  +E  D L KA   +   Y +  + F+ L+  G+N + HP+  +L R+KQYF K+K A + E RK
Sbjct:    7 LEDSLDNLEEVLGPLFEKPLFDISSE-LDLLQKAKLQVLLPYVVNDLIFVYLKTRGINPKEHPVVAELDRIKQYFAKIKNAEDPEKRK 93          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A383UZR6_BLUHO (Exosome complex protein n=2 Tax=Blumeria TaxID=34372 RepID=A0A383UZR6_BLUHO)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTA 243
            L+ ++  + ESL PLL+T   D  ++    L KA  ++   YAI SI F  +R+ GVN + HP+  +L R+KQYF K+KTA
Sbjct:   13 LDEEIDDLEESLAPLLKTAFSDITSKLP-LLDKAKLYVLVTYAIESILFSYIRLHGVNARQHPVFLELTRVKQYFDKIKTA 92          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: M2N2A2_BAUPA (Exosome complex protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N2A2_BAUPA)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-7
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   22 MRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREA 252
            + E+L PLL+T L    A +   L KA  ++   YAI SI F  LR+ GV+ ++HPI ++L R+K+YF K+KTA  A
Sbjct:   20 LEEALAPLLKTALS-TSASKLPLLDKAKLYVHATYAIESILFSALRLNGVDAKSHPIFQELNRVKEYFAKIKTAETA 95          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A2T7NYC2_POMCA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NYC2_POMCA)

HSP 1 Score: 55.8 bits (133), Expect = 3.310e-7
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   34 LGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREAEN 258
            L PLL TP  +   E+  PL  A   L  AY+I S+ ++ L + GVN + HP+K++L+R++ Y  +VK A+E+ N
Sbjct:   31 LQPLLATPHSEL-VEKLQPLDSAKMDLVVAYSINSLFWMYLNLCGVNPKDHPVKQELERIRSYMNRVKEAQESLN 104          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A125PJH5_9BASI (Exosome complex protein n=2 Tax=unclassified Rhodotorula TaxID=2640191 RepID=A0A125PJH5_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 3.400e-7
Identity = 28/89 (31.46%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLE---DRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREAEN 258
            L   +  + ++L PLL TPL+   +  A    PL++A  H+  +Y +  + ++ L+ AG+   +HP+ ++L+RLK YF K+K A+  ++
Sbjct:   13 LSTSLTALEQALDPLLATPLQQHLEHSAAADSPLTQARAHILASYVVHDLVWVYLKAAGIEPASHPVMQELERLKGYFGKLKAAQNGQS 101          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: N1JFJ5_BLUG1 (Exosome complex protein n=1 Tax=Blumeria graminis f. sp. hordei (strain DH14) TaxID=546991 RepID=N1JFJ5_BLUG1)

HSP 1 Score: 57.0 bits (136), Expect = 3.690e-7
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTA 243
            L+ ++  + ESL PLL+T   D  ++    L KA  ++   YAI SI F  +R+ GVN + HP+  +L R+KQYF K+KTA
Sbjct:   13 LDEEIDDLEESLAPLLKTAFSDITSKLP-LLDKAKLYVLVTYAIESILFSYIRLHGVNARQHPVFLELTRVKQYFDKIKTA 92          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A7M5UST6_9CNID (Nuclear nucleic acid-binding protein C1D n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UST6_9CNID)

HSP 1 Score: 55.8 bits (133), Expect = 4.360e-7
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTARE 249
            L+  +  ++ SL P L+ P+ D   +  DPL  A   L  AY   S+ +  L   G++ +THPIK++L R+KQY  K+K A E
Sbjct:   17 LDESLTDLQTSLKPFLKIPVTDIREKVKDPLENAKLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEE 99          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: A0A4U0V1F1_9PEZI (Exosome complex protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0V1F1_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 6.170e-7
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   22 MRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREA 252
            + E+L PLL+T L      +   L KA  ++   YAI SI F  LR+ GV+ + HPI ++L R+K+YF K+KTA  A
Sbjct:   20 LEEALAPLLKTALS-ASTSKLPLLDKAKLYVLVTYAIESILFSALRLNGVDVKEHPIYQELNRVKEYFAKIKTAESA 95          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: UPI0001CBB2DB (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB2DB)

HSP 1 Score: 54.7 bits (130), Expect = 8.640e-7
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   31 SLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVK 237
            +L PLL TP  +      DPL KA   L  AYA+ ++ ++ L + GVN + HPIK++L R++ Y  ++K
Sbjct:   29 ALKPLLETPHSEIQEVVCDPLDKAKIDLVAAYAMNAMFWIYLTMQGVNPREHPIKQELDRIRNYMNRIK 97          
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Match: C4YC51_CLAL4 (Exosome complex protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4YC51_CLAL4)

HSP 1 Score: 55.1 bits (131), Expect = 8.960e-7
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 LERQVALMRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGVNTQTHPIKEDLQRLKQYFQKVKTAREA 252
            LE  V  + E+L P+L T +ED  AE + P  K   + ++ Y + SI F  ++  GVNT  HP+  +L R+KQ  + +K A E+
Sbjct:   14 LEHSVEDLSEALEPVLNTSIEDMIAECTTPQQKVKVYNSYLYCVISILFAYIKSLGVNTDDHPVMNELTRIKQSMKALKDAEES 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101030.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9VNG7_SPHS41.000e-738.64Exosome complex protein n=1 Tax=Sphaerobolus stell... [more]
A0A383UZR6_BLUHO1.010e-741.98Exosome complex protein n=2 Tax=Blumeria TaxID=343... [more]
M2N2A2_BAUPA2.230e-744.16Exosome complex protein n=1 Tax=Baudoinia panameri... [more]
A0A2T7NYC2_POMCA3.310e-740.00Nuclear nucleic acid-binding protein C1D n=1 Tax=P... [more]
A0A125PJH5_9BASI3.400e-731.46Exosome complex protein n=2 Tax=unclassified Rhodo... [more]
N1JFJ5_BLUG13.690e-741.98Exosome complex protein n=1 Tax=Blumeria graminis ... [more]
A0A7M5UST6_9CNID4.360e-737.35Nuclear nucleic acid-binding protein C1D n=1 Tax=C... [more]
A0A4U0V1F1_9PEZI6.170e-742.86Exosome complex protein n=1 Tax=Friedmanniomyces e... [more]
UPI0001CBB2DB8.640e-739.13nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
C4YC51_CLAL48.960e-736.90Exosome complex protein n=2 Tax=Clavispora lusitan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101030contigM-pyrifera_M_contig101030:261..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.7619886-UTR-M-pyrifera_M_contig101030:260..2811622815507.7619886-UTR-M-pyrifera_M_contig101030:260..281Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101030 261..281 +
1692277442.7713702-UTR-M-pyrifera_M_contig101030:260..2811692277442.7713702-UTR-M-pyrifera_M_contig101030:260..281Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101030 261..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.778962-CDS-M-pyrifera_M_contig101030:281..6261622815507.778962-CDS-M-pyrifera_M_contig101030:281..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101030 282..626 +
1692277442.78141-CDS-M-pyrifera_M_contig101030:281..6261692277442.78141-CDS-M-pyrifera_M_contig101030:281..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101030 282..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101030.224.1prot_M-pyrifera_M_contig101030.224.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101030 282..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101030.224.1

>prot_M-pyrifera_M_contig101030.224.1 ID=prot_M-pyrifera_M_contig101030.224.1|Name=mRNA_M-pyrifera_M_contig101030.224.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MRESLGPLLRTPLEDRDAEESDPLSKADDHLAHAYAIGSISFLLLRVAGV
NTQTHPIKEDLQRLKQYFQKVKTAREAENRKESASSSSLSSSSSSSSSSS
SSSSSSPSSSSPPSS
back to top

mRNA from alignment at M-pyrifera_M_contig101030:261..626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101030.224.1 ID=mRNA_M-pyrifera_M_contig101030.224.1|Name=mRNA_M-pyrifera_M_contig101030.224.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig101030:261..626+ (Macrocystis pyrifera P11B4 male)
TTGGAGCGCCAGGTTGCTTTGATGCGTGAATCGTTGGGACCTTTGTTGCG CACACCTCTGGAGGATCGCGATGCGGAGGAGAGTGACCCGTTGTCGAAAG CAGATGACCACCTAGCACATGCTTATGCGATTGGTTCGATTTCTTTCCTC CTACTGCGAGTGGCAGGCGTGAACACGCAAACCCACCCCATCAAGGAGGA CTTGCAGCGATTGAAACAATACTTCCAGAAAGTGAAAACGGCCAGGGAAG CAGAAAATCGGAAAGAATCAGCTTCGTCATCATCATTGTCGTCATCGTCT TCTTCTTCTTCTTCTTCTTCATCATCATCATCATCATCACCATCATCATC ATCACCACCATCATCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101030:261..626+

>mRNA_M-pyrifera_M_contig101030.224.1 ID=mRNA_M-pyrifera_M_contig101030.224.1|Name=mRNA_M-pyrifera_M_contig101030.224.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig101030:261..626+ (Macrocystis pyrifera P11B4 male)
ATGCGTGAATCGTTGGGACCTTTGTTGCGCACACCTCTGGAGGATCGCGA
TGCGGAGGAGAGTGACCCGTTGTCGAAAGCAGATGACCACCTAGCACATG
CTTATGCGATTGGTTCGATTTCTTTCCTCCTACTGCGAGTGGCAGGCGTG
AACACGCAAACCCACCCCATCAAGGAGGACTTGCAGCGATTGAAACAATA
CTTCCAGAAAGTGAAAACGGCCAGGGAAGCAGAAAATCGGAAAGAATCAG
CTTCGTCATCATCATTGTCGTCATCGTCTTCTTCTTCTTCTTCTTCTTCA
TCATCATCATCATCATCACCATCATCATCATCACCACCATCATCAATGCG
TGAATCGTTGGGACCTTTGTTGCGCACACCTCTGGAGGATCGCGATGCGG
AGGAGAGTGACCCGTTGTCGAAAGCAGATGACCACCTAGCACATGCTTAT
GCGATTGGTTCGATTTCTTTCCTCCTACTGCGAGTGGCAGGCGTGAACAC
GCAAACCCACCCCATCAAGGAGGACTTGCAGCGATTGAAACAATACTTCC
AGAAAGTGAAAACGGCCAGGGAAGCAGAAAATCGGAAAGAATCAGCTTCG
TCATCATCATTGTCGTCATCGTCTTCTTCTTCTTCTTCTTCTTCATCATC
ATCATCATCATCACCATCATCATCATCACCACCATCATCA
back to top