mRNA_M-pyrifera_M_contig101006.217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101006.217.1
Unique NamemRNA_M-pyrifera_M_contig101006.217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101006.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101006contigM-pyrifera_M_contig101006:175..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.395523-CDS-M-pyrifera_M_contig101006:174..3561622815507.395523-CDS-M-pyrifera_M_contig101006:174..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101006 175..356 -
1692277442.6145992-CDS-M-pyrifera_M_contig101006:174..3561692277442.6145992-CDS-M-pyrifera_M_contig101006:174..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101006 175..356 -
1622815507.4094155-CDS-M-pyrifera_M_contig101006:418..5601622815507.4094155-CDS-M-pyrifera_M_contig101006:418..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101006 419..560 -
1692277442.622593-CDS-M-pyrifera_M_contig101006:418..5601692277442.622593-CDS-M-pyrifera_M_contig101006:418..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101006 419..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101006.217.1prot_M-pyrifera_M_contig101006.217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101006 175..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101006.217.1

>prot_M-pyrifera_M_contig101006.217.1 ID=prot_M-pyrifera_M_contig101006.217.1|Name=mRNA_M-pyrifera_M_contig101006.217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LSGTISNKIGQLEGLNYLNLYSNQLSGTLPQGLGNLKELASLGLWGNQLT
GTIPEIFCGMSKLQELYIEENLFFGAVPNSLSGCCVPQLVFLFLDDNYLS
SFPASLQE
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mRNA from alignment at M-pyrifera_M_contig101006:175..560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101006.217.1 ID=mRNA_M-pyrifera_M_contig101006.217.1|Name=mRNA_M-pyrifera_M_contig101006.217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=386bp|location=Sequence derived from alignment at M-pyrifera_M_contig101006:175..560- (Macrocystis pyrifera P11B4 male)
TTGTCAGGCACCATCTCCAACAAGATCGGGCAGCTGGAAGGCTTGAACTA
TCTCAACCTGTACTCAAACCAATTGTCTGGCACCCTTCCACAGGGCCTTG
GCAATCTGAAGGAATTGGCAAGTCTTGGGCTTTGGGGAAACCGTACGTCG
TTTCGGCTCAGGCCTTCACCTTCTCTCCTCTCCTCTCACTGACAATGGCG
GCAGAGTTGACTGGAACCATTCCAGAGATCTTCTGCGGGATGTCAAAGCT
TCAGGAGCTCTACATCGAAGAGAACTTGTTCTTCGGAGCAGTGCCCAATA
GCCTTTCGGGATGCTGCGTTCCCCAGTTGGTGTTTCTCTTCCTCGATGAC
AACTACCTCAGCTCTTTCCCTGCCAGTCTCCAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101006:175..560-

>mRNA_M-pyrifera_M_contig101006.217.1 ID=mRNA_M-pyrifera_M_contig101006.217.1|Name=mRNA_M-pyrifera_M_contig101006.217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig101006:175..560- (Macrocystis pyrifera P11B4 male)
TTGTCAGGCACCATCTCCAACAAGATCGGGCAGCTGGAAGGCTTGAACTA
TCTCAACCTGTACTCAAACCAATTGTCTGGCACCCTTCCACAGGGCCTTG
GCAATCTGAAGGAATTGGCAAGTCTTGGGCTTTGGGGAAACCTTGTCAGG
CACCATCTCCAACAAGATCGGGCAGCTGGAAGGCTTGAACTATCTCAACC
TGTACTCAAACCAATTGTCTGGCACCCTTCCACAGGGCCTTGGCAATCTG
AAGGAATTGGCAAGTCTTGGGCTTTGGGGAAACCAGTTGACTGGAACCAT
TCCAGAGATCTTCTGCGGGATGTCAAAGCTTCAGGAGCTCTACATCGAAG
AGAACTTGTTCTTCGGAGCAGTGCCCAATAGCCTTTCGGGATGCTGCGTT
CCCCAGTTGGTGTTTCTCTTCCTCGATGACAACTACCTCAGCTCTTTCCC
TGCCAGTCTCCAGGAAAGTTGACTGGAACCATTCCAGAGATCTTCTGCGG
GATGTCAAAGCTTCAGGAGCTCTACATCGAAGAGAACTTGTTCTTCGGAG
CAGTGCCCAATAGCCTTTCGGGATGCTGCGTTCCCCAGTTGGTGTTTCTC
TTCCTCGATGACAACTACCTCAGCTCTTTCCCTGCCAGTCTCCAGGAA
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