mRNA_M-pyrifera_M_contig101005.216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101005.216.1
Unique NamemRNA_M-pyrifera_M_contig101005.216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101005.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101005contigM-pyrifera_M_contig101005:196..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.3489902-CDS-M-pyrifera_M_contig101005:195..2401622815507.3489902-CDS-M-pyrifera_M_contig101005:195..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101005 196..240 -
1692277442.5965004-CDS-M-pyrifera_M_contig101005:195..2401692277442.5965004-CDS-M-pyrifera_M_contig101005:195..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101005 196..240 -
1622815507.3599167-CDS-M-pyrifera_M_contig101005:297..4741622815507.3599167-CDS-M-pyrifera_M_contig101005:297..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101005 298..474 -
1692277442.6070693-CDS-M-pyrifera_M_contig101005:297..4741692277442.6070693-CDS-M-pyrifera_M_contig101005:297..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101005 298..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101005.216.1prot_M-pyrifera_M_contig101005.216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101005 196..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101005.216.1

>prot_M-pyrifera_M_contig101005.216.1 ID=prot_M-pyrifera_M_contig101005.216.1|Name=mRNA_M-pyrifera_M_contig101005.216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
ACNTSKHRAGKTRKTAGLLVAAAMCGTVVAASELLRCESLTQVRVYVHVR
AVPRSHAQQLIVFYDDGCHLRRFL
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mRNA from alignment at M-pyrifera_M_contig101005:196..474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101005.216.1 ID=mRNA_M-pyrifera_M_contig101005.216.1|Name=mRNA_M-pyrifera_M_contig101005.216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig101005:196..474- (Macrocystis pyrifera P11B4 male)
GCCTGCAACACAAGCAAGCATCGTGCGGGGAAGACGAGAAAGACGGCTGG
CCTGCTCGTGGCTGCAGCGATGTGCGGCACAGTTGTGGCGGCCAGTGAGC
TTCTGCGCTGCGAGTCTCTTACACAGGTGCGTGTGTACGTCCATGTGCGT
GCGGTCCCGCGCTCACACGCACAACAGGTCGTCGGCTTTCTGTACAAGCT
CACGTTCAACAGGAGCGATGAGGCATTCTCGCAGTTGATCGTTTTCTACG
ATGACGGTTGTCACTTGCGACGCTTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101005:196..474-

>mRNA_M-pyrifera_M_contig101005.216.1 ID=mRNA_M-pyrifera_M_contig101005.216.1|Name=mRNA_M-pyrifera_M_contig101005.216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig101005:196..474- (Macrocystis pyrifera P11B4 male)
GCCTGCAACACAAGCAAGCATCGTGCGGGGAAGACGAGAAAGACGGCTGG
CCTGCTCGTGGCTGCAGCGATGTGCGGCACAGTTGTGGCGGCCAGTGAGC
TTCTGCGCTGCGAGTCTCTTACACAGGTGCGTGTGTACGTCCATGTGCGT
GCGGTCCCGCGCTCACACGCACAACAGGCCTGCAACACAAGCAAGCATCG
TGCGGGGAAGACGAGAAAGACGGCTGGCCTGCTCGTGGCTGCAGCGATGT
GCGGCACAGTTGTGGCGGCCAGTGAGCTTCTGCGCTGCGAGTCTCTTACA
CAGGTGCGTGTGTACGTCCATGTGCGTGCGGTCCCGCGCTCACACGCACA
ACAGTTGATCGTTTTCTACGATGACGGTTGTCACTTGCGACGCTTCCTGT
TGATCGTTTTCTACGATGACGGTTGTCACTTGCGACGCTTCCTG
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