mRNA_M-pyrifera_M_contig100996.211.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100996.211.1
Unique NamemRNA_M-pyrifera_M_contig100996.211.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7K2AHT7_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AHT7_9ACTN)

HSP 1 Score: 343 bits (879), Expect = 2.210e-107
Identity = 165/212 (77.83%), Postives = 184/212 (86.79%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636
            L W+A RL+P  + TTDE+TNLL  L+G YVPAGPSGAP+RG AHVLPTGRNFYSVD KA+PSPLAWEVGS LA+RLV +HVA+TG  PTTVGLVLWGTAAMRT GDD A+ALALLGV P+WN+ESRRV GLEV+ LA+LGRPR+DVTLRISGFFRDAFPHVI LLD AVEMVA LDE A+ NP+A  G  DARIYGPPPGGYGSGILPV+E
Sbjct:  751 LSWVANRLVPAYQATTDELTNLLAGLNGRYVPAGPSGAPTRGAAHVLPTGRNFYSVDSKALPSPLAWEVGSALADRLVERHVAETGAPPTTVGLVLWGTAAMRTMGDDVAQALALLGVHPIWNEESRRVAGLEVVSLADLGRPRIDVTLRISGFFRDAFPHVIDLLDSAVEMVAGLDETAEDNPVAEAGAADARIYGPPPGGYGSGILPVIE 962          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A2N5XE22_9ACTN (Cobaltochelatase subunit CobN (Fragment) n=1 Tax=Streptomyces sp. DJ TaxID=2067551 RepID=A0A2N5XE22_9ACTN)

HSP 1 Score: 289 bits (740), Expect = 2.900e-96
Identity = 141/223 (63.23%), Postives = 172/223 (77.13%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636
            L + AT ++P L +TTDEI N+L  LDGGYVPAGPSG+P+RG  +VLPTGRNFYSVDPKAIPS L+WEVG  LA+ L+A+H+ADTG  P +VGL +WGT+ MRT GDD AE LALLG RPVW+D SRRVTG E++PL ELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV  VA LDEPA  N + A    D           ARI+G  PG YG+G+LP+++
Sbjct:   22 LEFAATEVVPRLARTTDEIGNVLHALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRLSWEVGQALADSLLARHLADTGEYPRSVGLTVWGTSCMRTQGDDIAEILALLGCRPVWDDASRRVTGFEIVPLEELGRPRIDVTVRISGFFRDAFPHVVALVDDAVRAVAELDEPAGSNHVRAHADADTAEHGDRRRATARIFGSKPGAYGAGLLPLID 244          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A538LUY9_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LUY9_9ACTN)

HSP 1 Score: 313 bits (801), Expect = 3.220e-96
Identity = 149/212 (70.28%), Postives = 180/212 (84.91%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636
            LRW+  RL+P L +TTDEI+++L  LDG +VP+GPSGAPSRG AH LPTGRNFYS+DP+A+PSPLAW+VGS LAERL+  HVA+ G  P +VGLV+WGTAAMRT+GDD AEALAL+GVRPVW +E+ RVTGLEV+PL ELGRPR+DVT+R+SGFFRDAFPHV+ LLDEAV  VA+LDEPA +N +AA G  D R++GP PG YGSGIL +LE
Sbjct:  747 LRWVGQRLVPALHRTTDEISSVLAALDGRHVPSGPSGAPSRGMAHALPTGRNFYSLDPRAVPSPLAWQVGSLLAERLLEAHVAEEGRYPQSVGLVVWGTAAMRTSGDDIAEALALMGVRPVWAEETGRVTGLEVVPLDELGRPRIDVTVRVSGFFRDAFPHVLGLLDEAVRTVAALDEPASENFVAAHGAGDPRVFGPKPGAYGSGILALLE 958          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A8F4J6V7_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J6V7_9ACTN)

HSP 1 Score: 310 bits (794), Expect = 6.300e-95
Identity = 151/211 (71.56%), Postives = 175/211 (82.94%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVL 633
            LRW+A+ L+P L +T DE+ NLL  LDGG+VPAGPSGAP+RGGAHVLPTGRN YSVDP+AIPSPLAW+VG  LA+RLV +H+A+TG  P TVGLV+WGTA MRT GDD AEALALLGVRP W+D S RV GLEVIPLA+LGRPRVDVTLRISGFFRDAFP V++LLD+AV +V  LDE  DQNP+ ATG  D RI+GP PG YGSG+   +
Sbjct:  812 LRWVASTLVPALARTPDELANLLLGLDGGHVPAGPSGAPTRGGAHVLPTGRNLYSVDPRAIPSPLAWDVGVALADRLVERHLAETGRFPRTVGLVVWGTANMRTQGDDVAEALALLGVRPRWHDRSGRVEGLEVIPLADLGRPRVDVTLRISGFFRDAFPDVVSLLDDAVRLVGELDEAEDQNPVRATGLADPRIFGPAPGTYGSGVQQAI 1022          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7W1AR22_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W1AR22_9ACTN)

HSP 1 Score: 299 bits (765), Expect = 2.590e-94
Identity = 150/212 (70.75%), Postives = 175/212 (82.55%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636
            LRW+  RLIPNL +T DE+ +++  LDG +VPAGPSGAP+RG AHVLPTGRNFYSVDPKA+PSPLA+EVG+ LA+ L+A+H+A+ G  P TVGLV WGTAAMRT GDD AEALAL+GVRPVW  ES RVTG+E IPLAELGRPRVDVTLRISGFFRDAFPHVIALLD+A  +VA+LDE  + N + A G  D RI+G  PG YGSGIL +LE
Sbjct:  280 LRWVCDRLIPNLGRTPDEVGSVMAALDGRHVPAGPSGAPTRGMAHVLPTGRNFYSVDPKAVPSPLAYEVGTGLADALIARHLAEEGRYPETVGLVAWGTAAMRTMGDDVAEALALVGVRPVWAAESGRVTGVEAIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDDAFSLVANLDEALEDNLVRAHG-DDPRIFGSKPGAYGSGILALLE 490          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7W0HDN2_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0HDN2_9ACTN)

HSP 1 Score: 298 bits (762), Expect = 1.200e-93
Identity = 145/212 (68.40%), Postives = 172/212 (81.13%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636
            L W+  RL P L  TTDE+TN L  LDG +VPAGPSGAPSRG AHVLPTGRNF+SVDPKA+PS LAW+VG  LA+RL+ +HVA+TG  P +VGLV+WGT+AMRT+GDD A ALALLGVRP+W +ES RVTG+E +PLAELGRPRVDVTLRISGFFRDAFP+++ LLD+AV +V  LDE  + N + A G  D RI+G  PG YGSGILP+LE
Sbjct:  307 LAWICDRLHPALSATTDEVTNTLGALDGRFVPAGPSGAPSRGMAHVLPTGRNFFSVDPKALPSRLAWDVGRALADRLIERHVAETGHPPESVGLVVWGTSAMRTSGDDVACALALLGVRPIWAEESGRVTGVEAVPLAELGRPRVDVTLRISGFFRDAFPNLVHLLDDAVTLVGGLDEAPEDNYVRAHGADDPRIFGAKPGAYGSGILPLLE 518          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: UPI000D84874B (cobaltochelatase subunit CobN n=1 Tax=Micromonospora globispora TaxID=1450148 RepID=UPI000D84874B)

HSP 1 Score: 279 bits (714), Expect = 2.060e-91
Identity = 135/223 (60.54%), Postives = 173/223 (77.58%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636
            LR+ +  ++P L++TTDE+  +L  LDG +VP GPSG+P+RG  +VLPTGRNFYSVDPKAIPS  AW+VG  LA+ L+A+H+ADTG  P +VGL +WGT+AMRT GDD AE LALLG RP W+D SRRVTG+EV+PL ELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV  VA+LDEPA++N + A    D           ARI+G  PG YG+G+LP+++
Sbjct:   77 LRFASREVVPRLDRTTDELDRVLGALDGRFVPPGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRNAWDVGVALADSLLARHLADTGAYPRSVGLTVWGTSAMRTQGDDIAEILALLGCRPTWDDRSRRVTGVEVVPLTELGRPRIDVTVRISGFFRDAFPHVVALIDDAVRRVAALDEPAEENHVRAHVDADMAEHGDERRATARIFGSKPGAYGAGLLPLID 299          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: S4MYJ0_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces afghaniensis 772 TaxID=1283301 RepID=S4MYJ0_9ACTN)

HSP 1 Score: 285 bits (728), Expect = 7.400e-91
Identity = 140/223 (62.78%), Postives = 172/223 (77.13%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636
            L +  T ++P L +TTDEI ++LR LDGGYVPAGPSG+P+RG  +VLPTGRNFYSVDPKAIPS L+WEVG +LA+ LV +++ DTG  P +VGL +WGT+AMRT GDD AE LALLG RPVW+D SRRVTG EVIP  ELGRPR+DVT+RISGFFRDAFPHV+ L+D+AV  VA LDEPA+QN + A    D           ARI+G  PG YG+G+LP+++
Sbjct:   77 LEFACTEVVPRLARTTDEIGHILRALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRLSWEVGQSLADSLVQRYLTDTGEYPKSVGLTVWGTSAMRTQGDDIAEILALLGCRPVWDDASRRVTGFEVIPPEELGRPRIDVTVRISGFFRDAFPHVVGLIDDAVRRVAELDEPAEQNYVRAHADEDTAEHGDRRRATARIFGSKPGAYGAGLLPLID 299          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A3N9V755_9ACTN (Cobaltochelatase subunit CobN (Fragment) n=4 Tax=Micromonospora TaxID=1873 RepID=A0A3N9V755_9ACTN)

HSP 1 Score: 282 bits (721), Expect = 4.970e-90
Identity = 137/223 (61.43%), Postives = 174/223 (78.03%), Query Frame = 1
Query:    1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636
            LR+ A  ++P L++TTDE+  +L  LDG +VP GPSG+P+RG  +VLPTGRNFYSVDPKAIPS  AW+VG  LA+ L+A+H+ADTG  P +VGL +WGT+AMRT GDD AE LALLG RP W+D SRRVTG+EV+PLAELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV  VA+LDEPA++N + A    D           ARI+G  PG YG+G+LP+++
Sbjct:   59 LRFAAREVVPRLDRTTDELDRVLGALDGRFVPPGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRNAWDVGVALADSLLARHLADTGAYPRSVGLTVWGTSAMRTQGDDIAEILALLGCRPTWDDRSRRVTGVEVVPLAELGRPRIDVTVRISGFFRDAFPHVVALIDDAVRRVAALDEPAEENHVRAHVDADMAEHGDERRATARIFGSKPGAYGAGLLPLID 281          
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7V8XZP0_9PSEU (Cobaltochelatase subunit CobN n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A7V8XZP0_9PSEU)

HSP 1 Score: 281 bits (720), Expect = 6.130e-90
Identity = 138/219 (63.01%), Postives = 168/219 (76.71%), Query Frame = 1
Query:   13 ATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636
               ++P L +TTDEI  +L  LDGGYVPAGPSG+P+RG  +VLPTGRNFYSVDPKAIPS  AWEVGS LA+ L+A+H+ADTG  P +VGL +WGT+AMRT GDD AE LAL+G RP W++ SRRVTG EV+PL EL RPR+DVT+RISGFFRDAFPHVIALLDEAV  VA L+EPA+QN + A    D           +RI+G  PG YG+G+LP+++
Sbjct:   57 CAEVVPRLNRTTDEIAGVLHALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSTSAWEVGSALADSLLARHLADTGEYPRSVGLTVWGTSAMRTQGDDIAEVLALIGCRPTWDEASRRVTGFEVVPLDELARPRIDVTVRISGFFRDAFPHVIALLDEAVNAVAELEEPAEQNHLRAHALADHGEHGDWRRATSRIFGSKPGAYGAGLLPLID 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2AHT7_9ACTN2.210e-10777.83Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobi... [more]
A0A2N5XE22_9ACTN2.900e-9663.23Cobaltochelatase subunit CobN (Fragment) n=1 Tax=S... [more]
A0A538LUY9_9ACTN3.220e-9670.28Cobaltochelatase subunit CobN n=1 Tax=Actinomyceti... [more]
A0A8F4J6V7_9ACTN6.300e-9571.56Cobaltochelatase subunit CobN n=1 Tax=Aquihabitans... [more]
A0A7W1AR22_9ACTN2.590e-9470.75Cobaltochelatase subunit CobN n=1 Tax=Thermoleophi... [more]
A0A7W0HDN2_9ACTN1.200e-9368.40Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobi... [more]
UPI000D84874B2.060e-9160.54cobaltochelatase subunit CobN n=1 Tax=Micromonospo... [more]
S4MYJ0_9ACTN7.400e-9162.78Uncharacterized protein n=1 Tax=Streptomyces afgha... [more]
A0A3N9V755_9ACTN4.970e-9061.43Cobaltochelatase subunit CobN (Fragment) n=4 Tax=M... [more]
A0A7V8XZP0_9PSEU6.130e-9063.01Cobaltochelatase subunit CobN n=1 Tax=Pseudonocard... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100996contigM-pyrifera_M_contig100996:39..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score292.0
Seed ortholog evalue2.3e-76
Seed eggNOG ortholog479433.Caci_6126
Preferred namecobN
KEGG rclassRC02000
KEGG koko:K02230
KEGG ReactionR05227
KEGG Pathwayko00860,ko01100,map00860,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cobaltochelatase CobN subunit
EggNOG OGs2GK0U@201174,COG1429@1,COG1429@2
EC6.6.1.2
COG Functional cat.H
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size636
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.124368-CDS-M-pyrifera_M_contig100996:38..6741622815507.124368-CDS-M-pyrifera_M_contig100996:38..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100996 39..674 +
1692277442.50729-CDS-M-pyrifera_M_contig100996:38..6741692277442.50729-CDS-M-pyrifera_M_contig100996:38..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100996 39..674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100996.211.1prot_M-pyrifera_M_contig100996.211.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100996 39..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100996.211.1

>prot_M-pyrifera_M_contig100996.211.1 ID=prot_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTG
RNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTA
AMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLR
ISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPP
GGYGSGILPVLE
back to top

mRNA from alignment at M-pyrifera_M_contig100996:39..674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100996.211.1 ID=mRNA_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig100996:39..674+ (Macrocystis pyrifera P11B4 male)
CTTCGGTGGCTCGCGACTCGCCTCATCCCGAACCTCGAACAGACCACCGA CGAGATCACCAACCTGCTCCGCATGCTCGACGGTGGCTACGTACCCGCCG GACCGAGCGGCGCCCCGAGCCGAGGCGGCGCCCACGTTCTGCCGACCGGC CGGAATTTCTACTCCGTCGATCCCAAGGCCATTCCGTCGCCGCTGGCGTG GGAGGTCGGCTCGACCCTGGCCGAGCGCCTCGTCGCCAAACACGTTGCCG ACACCGGCCTGGCGCCGACCACGGTCGGCCTGGTGCTGTGGGGAACTGCT GCGATGCGCACCACCGGCGACGACGCCGCCGAGGCCCTTGCGCTGCTCGG CGTCCGGCCGGTCTGGAACGACGAGAGCCGAAGAGTCACCGGCCTCGAAG TCATCCCGCTCGCCGAGCTCGGCCGTCCTCGTGTCGACGTGACGCTTCGT ATCTCCGGGTTCTTCCGTGACGCGTTTCCGCACGTGATCGCCCTCCTCGA CGAAGCGGTCGAGATGGTGGCGTCGCTCGACGAACCGGCCGATCAGAACC CCATCGCTGCAACCGGCGGAACCGATGCCCGCATCTACGGCCCGCCGCCT GGCGGCTACGGCTCGGGGATCCTCCCGGTGCTCGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100996:39..674+

>mRNA_M-pyrifera_M_contig100996.211.1 ID=mRNA_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig100996:39..674+ (Macrocystis pyrifera P11B4 male)
CTTCGGTGGCTCGCGACTCGCCTCATCCCGAACCTCGAACAGACCACCGA
CGAGATCACCAACCTGCTCCGCATGCTCGACGGTGGCTACGTACCCGCCG
GACCGAGCGGCGCCCCGAGCCGAGGCGGCGCCCACGTTCTGCCGACCGGC
CGGAATTTCTACTCCGTCGATCCCAAGGCCATTCCGTCGCCGCTGGCGTG
GGAGGTCGGCTCGACCCTGGCCGAGCGCCTCGTCGCCAAACACGTTGCCG
ACACCGGCCTGGCGCCGACCACGGTCGGCCTGGTGCTGTGGGGAACTGCT
GCGATGCGCACCACCGGCGACGACGCCGCCGAGGCCCTTGCGCTGCTCGG
CGTCCGGCCGGTCTGGAACGACGAGAGCCGAAGAGTCACCGGCCTCGAAG
TCATCCCGCTCGCCGAGCTCGGCCGTCCTCGTGTCGACGTGACGCTTCGT
ATCTCCGGGTTCTTCCGTGACGCGTTTCCGCACGTGATCGCCCTCCTCGA
CGAAGCGGTCGAGATGGTGGCGTCGCTCGACGAACCGGCCGATCAGAACC
CCATCGCTGCAACCGGCGGAACCGATGCCCGCATCTACGGCCCGCCGCCT
GGCGGCTACGGCTCGGGGATCCTCCCGGTGCTCGAGCTTCGGTGGCTCGC
GACTCGCCTCATCCCGAACCTCGAACAGACCACCGACGAGATCACCAACC
TGCTCCGCATGCTCGACGGTGGCTACGTACCCGCCGGACCGAGCGGCGCC
CCGAGCCGAGGCGGCGCCCACGTTCTGCCGACCGGCCGGAATTTCTACTC
CGTCGATCCCAAGGCCATTCCGTCGCCGCTGGCGTGGGAGGTCGGCTCGA
CCCTGGCCGAGCGCCTCGTCGCCAAACACGTTGCCGACACCGGCCTGGCG
CCGACCACGGTCGGCCTGGTGCTGTGGGGAACTGCTGCGATGCGCACCAC
CGGCGACGACGCCGCCGAGGCCCTTGCGCTGCTCGGCGTCCGGCCGGTCT
GGAACGACGAGAGCCGAAGAGTCACCGGCCTCGAAGTCATCCCGCTCGCC
GAGCTCGGCCGTCCTCGTGTCGACGTGACGCTTCGTATCTCCGGGTTCTT
CCGTGACGCGTTTCCGCACGTGATCGCCCTCCTCGACGAAGCGGTCGAGA
TGGTGGCGTCGCTCGACGAACCGGCCGATCAGAACCCCATCGCTGCAACC
GGCGGAACCGATGCCCGCATCTACGGCCCGCCGCCTGGCGGCTACGGCTC
GGGGATCCTCCCGGTGCTCGAG
back to top