mRNA_M-pyrifera_M_contig100996.211.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7K2AHT7_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AHT7_9ACTN) HSP 1 Score: 343 bits (879), Expect = 2.210e-107 Identity = 165/212 (77.83%), Postives = 184/212 (86.79%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636 L W+A RL+P + TTDE+TNLL L+G YVPAGPSGAP+RG AHVLPTGRNFYSVD KA+PSPLAWEVGS LA+RLV +HVA+TG PTTVGLVLWGTAAMRT GDD A+ALALLGV P+WN+ESRRV GLEV+ LA+LGRPR+DVTLRISGFFRDAFPHVI LLD AVEMVA LDE A+ NP+A G DARIYGPPPGGYGSGILPV+E Sbjct: 751 LSWVANRLVPAYQATTDELTNLLAGLNGRYVPAGPSGAPTRGAAHVLPTGRNFYSVDSKALPSPLAWEVGSALADRLVERHVAETGAPPTTVGLVLWGTAAMRTMGDDVAQALALLGVHPIWNEESRRVAGLEVVSLADLGRPRIDVTLRISGFFRDAFPHVIDLLDSAVEMVAGLDETAEDNPVAEAGAADARIYGPPPGGYGSGILPVIE 962
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A2N5XE22_9ACTN (Cobaltochelatase subunit CobN (Fragment) n=1 Tax=Streptomyces sp. DJ TaxID=2067551 RepID=A0A2N5XE22_9ACTN) HSP 1 Score: 289 bits (740), Expect = 2.900e-96 Identity = 141/223 (63.23%), Postives = 172/223 (77.13%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636 L + AT ++P L +TTDEI N+L LDGGYVPAGPSG+P+RG +VLPTGRNFYSVDPKAIPS L+WEVG LA+ L+A+H+ADTG P +VGL +WGT+ MRT GDD AE LALLG RPVW+D SRRVTG E++PL ELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV VA LDEPA N + A D ARI+G PG YG+G+LP+++ Sbjct: 22 LEFAATEVVPRLARTTDEIGNVLHALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRLSWEVGQALADSLLARHLADTGEYPRSVGLTVWGTSCMRTQGDDIAEILALLGCRPVWDDASRRVTGFEIVPLEELGRPRIDVTVRISGFFRDAFPHVVALVDDAVRAVAELDEPAGSNHVRAHADADTAEHGDRRRATARIFGSKPGAYGAGLLPLID 244
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A538LUY9_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LUY9_9ACTN) HSP 1 Score: 313 bits (801), Expect = 3.220e-96 Identity = 149/212 (70.28%), Postives = 180/212 (84.91%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636 LRW+ RL+P L +TTDEI+++L LDG +VP+GPSGAPSRG AH LPTGRNFYS+DP+A+PSPLAW+VGS LAERL+ HVA+ G P +VGLV+WGTAAMRT+GDD AEALAL+GVRPVW +E+ RVTGLEV+PL ELGRPR+DVT+R+SGFFRDAFPHV+ LLDEAV VA+LDEPA +N +AA G D R++GP PG YGSGIL +LE Sbjct: 747 LRWVGQRLVPALHRTTDEISSVLAALDGRHVPSGPSGAPSRGMAHALPTGRNFYSLDPRAVPSPLAWQVGSLLAERLLEAHVAEEGRYPQSVGLVVWGTAAMRTSGDDIAEALALMGVRPVWAEETGRVTGLEVVPLDELGRPRIDVTVRVSGFFRDAFPHVLGLLDEAVRTVAALDEPASENFVAAHGAGDPRVFGPKPGAYGSGILALLE 958
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A8F4J6V7_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J6V7_9ACTN) HSP 1 Score: 310 bits (794), Expect = 6.300e-95 Identity = 151/211 (71.56%), Postives = 175/211 (82.94%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVL 633 LRW+A+ L+P L +T DE+ NLL LDGG+VPAGPSGAP+RGGAHVLPTGRN YSVDP+AIPSPLAW+VG LA+RLV +H+A+TG P TVGLV+WGTA MRT GDD AEALALLGVRP W+D S RV GLEVIPLA+LGRPRVDVTLRISGFFRDAFP V++LLD+AV +V LDE DQNP+ ATG D RI+GP PG YGSG+ + Sbjct: 812 LRWVASTLVPALARTPDELANLLLGLDGGHVPAGPSGAPTRGGAHVLPTGRNLYSVDPRAIPSPLAWDVGVALADRLVERHLAETGRFPRTVGLVVWGTANMRTQGDDVAEALALLGVRPRWHDRSGRVEGLEVIPLADLGRPRVDVTLRISGFFRDAFPDVVSLLDDAVRLVGELDEAEDQNPVRATGLADPRIFGPAPGTYGSGVQQAI 1022
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7W1AR22_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W1AR22_9ACTN) HSP 1 Score: 299 bits (765), Expect = 2.590e-94 Identity = 150/212 (70.75%), Postives = 175/212 (82.55%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636 LRW+ RLIPNL +T DE+ +++ LDG +VPAGPSGAP+RG AHVLPTGRNFYSVDPKA+PSPLA+EVG+ LA+ L+A+H+A+ G P TVGLV WGTAAMRT GDD AEALAL+GVRPVW ES RVTG+E IPLAELGRPRVDVTLRISGFFRDAFPHVIALLD+A +VA+LDE + N + A G D RI+G PG YGSGIL +LE Sbjct: 280 LRWVCDRLIPNLGRTPDEVGSVMAALDGRHVPAGPSGAPTRGMAHVLPTGRNFYSVDPKAVPSPLAYEVGTGLADALIARHLAEEGRYPETVGLVAWGTAAMRTMGDDVAEALALVGVRPVWAAESGRVTGVEAIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDDAFSLVANLDEALEDNLVRAHG-DDPRIFGSKPGAYGSGILALLE 490
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7W0HDN2_9ACTN (Cobaltochelatase subunit CobN n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0HDN2_9ACTN) HSP 1 Score: 298 bits (762), Expect = 1.200e-93 Identity = 145/212 (68.40%), Postives = 172/212 (81.13%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTDARIYGPPPGGYGSGILPVLE 636 L W+ RL P L TTDE+TN L LDG +VPAGPSGAPSRG AHVLPTGRNF+SVDPKA+PS LAW+VG LA+RL+ +HVA+TG P +VGLV+WGT+AMRT+GDD A ALALLGVRP+W +ES RVTG+E +PLAELGRPRVDVTLRISGFFRDAFP+++ LLD+AV +V LDE + N + A G D RI+G PG YGSGILP+LE Sbjct: 307 LAWICDRLHPALSATTDEVTNTLGALDGRFVPAGPSGAPSRGMAHVLPTGRNFFSVDPKALPSRLAWDVGRALADRLIERHVAETGHPPESVGLVVWGTSAMRTSGDDVACALALLGVRPIWAEESGRVTGVEAVPLAELGRPRVDVTLRISGFFRDAFPNLVHLLDDAVTLVGGLDEAPEDNYVRAHGADDPRIFGAKPGAYGSGILPLLE 518
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: UPI000D84874B (cobaltochelatase subunit CobN n=1 Tax=Micromonospora globispora TaxID=1450148 RepID=UPI000D84874B) HSP 1 Score: 279 bits (714), Expect = 2.060e-91 Identity = 135/223 (60.54%), Postives = 173/223 (77.58%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636 LR+ + ++P L++TTDE+ +L LDG +VP GPSG+P+RG +VLPTGRNFYSVDPKAIPS AW+VG LA+ L+A+H+ADTG P +VGL +WGT+AMRT GDD AE LALLG RP W+D SRRVTG+EV+PL ELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV VA+LDEPA++N + A D ARI+G PG YG+G+LP+++ Sbjct: 77 LRFASREVVPRLDRTTDELDRVLGALDGRFVPPGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRNAWDVGVALADSLLARHLADTGAYPRSVGLTVWGTSAMRTQGDDIAEILALLGCRPTWDDRSRRVTGVEVVPLTELGRPRIDVTVRISGFFRDAFPHVVALIDDAVRRVAALDEPAEENHVRAHVDADMAEHGDERRATARIFGSKPGAYGAGLLPLID 299
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: S4MYJ0_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces afghaniensis 772 TaxID=1283301 RepID=S4MYJ0_9ACTN) HSP 1 Score: 285 bits (728), Expect = 7.400e-91 Identity = 140/223 (62.78%), Postives = 172/223 (77.13%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636 L + T ++P L +TTDEI ++LR LDGGYVPAGPSG+P+RG +VLPTGRNFYSVDPKAIPS L+WEVG +LA+ LV +++ DTG P +VGL +WGT+AMRT GDD AE LALLG RPVW+D SRRVTG EVIP ELGRPR+DVT+RISGFFRDAFPHV+ L+D+AV VA LDEPA+QN + A D ARI+G PG YG+G+LP+++ Sbjct: 77 LEFACTEVVPRLARTTDEIGHILRALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRLSWEVGQSLADSLVQRYLTDTGEYPKSVGLTVWGTSAMRTQGDDIAEILALLGCRPVWDDASRRVTGFEVIPPEELGRPRIDVTVRISGFFRDAFPHVVGLIDDAVRRVAELDEPAEQNYVRAHADEDTAEHGDRRRATARIFGSKPGAYGAGLLPLID 299
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A3N9V755_9ACTN (Cobaltochelatase subunit CobN (Fragment) n=4 Tax=Micromonospora TaxID=1873 RepID=A0A3N9V755_9ACTN) HSP 1 Score: 282 bits (721), Expect = 4.970e-90 Identity = 137/223 (61.43%), Postives = 174/223 (78.03%), Query Frame = 1 Query: 1 LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636 LR+ A ++P L++TTDE+ +L LDG +VP GPSG+P+RG +VLPTGRNFYSVDPKAIPS AW+VG LA+ L+A+H+ADTG P +VGL +WGT+AMRT GDD AE LALLG RP W+D SRRVTG+EV+PLAELGRPR+DVT+RISGFFRDAFPHV+AL+D+AV VA+LDEPA++N + A D ARI+G PG YG+G+LP+++ Sbjct: 59 LRFAAREVVPRLDRTTDELDRVLGALDGRFVPPGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSRNAWDVGVALADSLLARHLADTGAYPRSVGLTVWGTSAMRTQGDDIAEILALLGCRPTWDDRSRRVTGVEVVPLAELGRPRIDVTVRISGFFRDAFPHVVALIDDAVRRVAALDEPAEENHVRAHVDADMAEHGDERRATARIFGSKPGAYGAGLLPLID 281
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Match: A0A7V8XZP0_9PSEU (Cobaltochelatase subunit CobN n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A7V8XZP0_9PSEU) HSP 1 Score: 281 bits (720), Expect = 6.130e-90 Identity = 138/219 (63.01%), Postives = 168/219 (76.71%), Query Frame = 1 Query: 13 ATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGRNFYSVDPKAIPSPLAWEVGSTLAERLVAKHVADTGLAPTTVGLVLWGTAAMRTTGDDAAEALALLGVRPVWNDESRRVTGLEVIPLAELGRPRVDVTLRISGFFRDAFPHVIALLDEAVEMVASLDEPADQNPIAATGGTD-----------ARIYGPPPGGYGSGILPVLE 636 ++P L +TTDEI +L LDGGYVPAGPSG+P+RG +VLPTGRNFYSVDPKAIPS AWEVGS LA+ L+A+H+ADTG P +VGL +WGT+AMRT GDD AE LAL+G RP W++ SRRVTG EV+PL EL RPR+DVT+RISGFFRDAFPHVIALLDEAV VA L+EPA+QN + A D +RI+G PG YG+G+LP+++ Sbjct: 57 CAEVVPRLNRTTDEIAGVLHALDGGYVPAGPSGSPTRGLVNVLPTGRNFYSVDPKAIPSTSAWEVGSALADSLLARHLADTGEYPRSVGLTVWGTSAMRTQGDDIAEVLALIGCRPTWDEASRRVTGFEVVPLDELARPRIDVTVRISGFFRDAFPHVIALLDEAVNAVAELEEPAEQNHLRAHALADHGEHGDWRRATSRIFGSKPGAYGAGLLPLID 275 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100996.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100996.211.1 >prot_M-pyrifera_M_contig100996.211.1 ID=prot_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp LRWLATRLIPNLEQTTDEITNLLRMLDGGYVPAGPSGAPSRGGAHVLPTGback to top mRNA from alignment at M-pyrifera_M_contig100996:39..674+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100996.211.1 ID=mRNA_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig100996:39..674+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100996:39..674+ >mRNA_M-pyrifera_M_contig100996.211.1 ID=mRNA_M-pyrifera_M_contig100996.211.1|Name=mRNA_M-pyrifera_M_contig100996.211.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig100996:39..674+ (Macrocystis pyrifera P11B4 male)back to top |