Homology
BLAST of mRNA_M-pyrifera_M_contig100857.191.1 vs. uniprot
Match: A0A5A8CFC9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFC9_CAFRO) HSP 1 Score: 101 bits (251), Expect = 8.210e-23 Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 Query: 7 EAAVRRSFTLMALLTGAHGLGERLLSLRAAASYKSLIRVFDPECRGSFHHVCAVLQKLVLSRPADVAAAVLDSGPTHIQRMLRFLHHPPVADTVLQLLT 303
E A S TL LL G G LL+ + SL+RVF P RGSFHH C VLQ+LVL+ P DVA A++ GP ++R++ FLHHPPVADT++QLLT
Sbjct: 472 EGAQATSLTLTRLLIKPDGDGCALLAAAPREATASLLRVFSPHSRGSFHHACTVLQRLVLAHPHDVAEALVALGPAPLRRLMAFLHHPPVADTLIQLLT 570
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 303 |
Cds size | 303 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815506.005866-CDS-M-pyrifera_M_contig100857:355..658 | 1622815506.005866-CDS-M-pyrifera_M_contig100857:355..658 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig100857 356..658 - |
1692277441.9364882-CDS-M-pyrifera_M_contig100857:355..658 | 1692277441.9364882-CDS-M-pyrifera_M_contig100857:355..658 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig100857 356..658 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100857.191.1 >prot_M-pyrifera_M_contig100857.191.1 ID=prot_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
EEEAAVRRSFTLMALLTGAHGLGERLLSLRAAASYKSLIRVFDPECRGSF HHVCAVLQKLVLSRPADVAAAVLDSGPTHIQRMLRFLHHPPVADTVLQLL T back to topmRNA from alignment at M-pyrifera_M_contig100857:356..658- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig100857.191.1 ID=mRNA_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig100857:356..658- (Macrocystis pyrifera P11B4 male) GAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTTGAC
AGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTGCAT
CGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCCTTC
CACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGCGGA
TGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCATGC
TCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTCCTC
ACC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig100857:356..658- >mRNA_M-pyrifera_M_contig100857.191.1 ID=mRNA_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig100857:356..658- (Macrocystis pyrifera P11B4 male) GAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTTGAC AGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTGCAT CGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCCTTC CACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGCGGA TGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCATGC TCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTCCTC ACCGAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTT GACAGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTG CATCGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCC TTCCACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGC GGATGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCA TGCTCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTC CTCACC back to top
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