mRNA_M-pyrifera_M_contig100857.191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100857.191.1
Unique NamemRNA_M-pyrifera_M_contig100857.191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100857.191.1 vs. uniprot
Match: A0A5A8CFC9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFC9_CAFRO)

HSP 1 Score: 101 bits (251), Expect = 8.210e-23
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    7 EAAVRRSFTLMALLTGAHGLGERLLSLRAAASYKSLIRVFDPECRGSFHHVCAVLQKLVLSRPADVAAAVLDSGPTHIQRMLRFLHHPPVADTVLQLLT 303
            E A   S TL  LL    G G  LL+     +  SL+RVF P  RGSFHH C VLQ+LVL+ P DVA A++  GP  ++R++ FLHHPPVADT++QLLT
Sbjct:  472 EGAQATSLTLTRLLIKPDGDGCALLAAAPREATASLLRVFSPHSRGSFHHACTVLQRLVLAHPHDVAEALVALGPAPLRRLMAFLHHPPVADTLIQLLT 570
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100857.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8CFC9_CAFRO8.210e-2352.53Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100857contigM-pyrifera_M_contig100857:356..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.005866-CDS-M-pyrifera_M_contig100857:355..6581622815506.005866-CDS-M-pyrifera_M_contig100857:355..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100857 356..658 -
1692277441.9364882-CDS-M-pyrifera_M_contig100857:355..6581692277441.9364882-CDS-M-pyrifera_M_contig100857:355..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100857 356..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100857.191.1prot_M-pyrifera_M_contig100857.191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100857 356..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100857.191.1

>prot_M-pyrifera_M_contig100857.191.1 ID=prot_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
EEEAAVRRSFTLMALLTGAHGLGERLLSLRAAASYKSLIRVFDPECRGSF
HHVCAVLQKLVLSRPADVAAAVLDSGPTHIQRMLRFLHHPPVADTVLQLL
T
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mRNA from alignment at M-pyrifera_M_contig100857:356..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100857.191.1 ID=mRNA_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig100857:356..658- (Macrocystis pyrifera P11B4 male)
GAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTTGAC
AGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTGCAT
CGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCCTTC
CACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGCGGA
TGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCATGC
TCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTCCTC
ACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100857:356..658-

>mRNA_M-pyrifera_M_contig100857.191.1 ID=mRNA_M-pyrifera_M_contig100857.191.1|Name=mRNA_M-pyrifera_M_contig100857.191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig100857:356..658- (Macrocystis pyrifera P11B4 male)
GAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTTGAC
AGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTGCAT
CGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCCTTC
CACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGCGGA
TGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCATGC
TCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTCCTC
ACCGAAGAGGAGGCAGCGGTTCGTCGCAGTTTCACTTTGATGGCACTCTT
GACAGGCGCACATGGGTTGGGAGAGAGGCTCTTGTCACTTCGTGCAGCTG
CATCGTACAAGTCTCTCATCCGTGTGTTTGATCCAGAATGTCGTGGTTCC
TTCCACCACGTATGTGCCGTGTTGCAGAAACTGGTGCTCTCCAGACCAGC
GGATGTCGCAGCAGCAGTGTTGGACTCTGGCCCTACCCACATTCAGCGCA
TGCTCCGTTTCCTCCACCACCCTCCAGTGGCTGACACGGTACTCCAACTC
CTCACC
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