mRNA_M-pyrifera_M_contig10079.172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10079.172.1
Unique NamemRNA_M-pyrifera_M_contig10079.172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10079.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10079contigM-pyrifera_M_contig10079:9087..9486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.9965239-CDS-M-pyrifera_M_contig10079:9086..93951622815504.9965239-CDS-M-pyrifera_M_contig10079:9086..9395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10079 9087..9395 +
1692277441.4160783-CDS-M-pyrifera_M_contig10079:9086..93951692277441.4160783-CDS-M-pyrifera_M_contig10079:9086..9395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10079 9087..9395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.0089962-UTR-M-pyrifera_M_contig10079:9395..94861622815505.0089962-UTR-M-pyrifera_M_contig10079:9395..9486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10079 9396..9486 +
1692277441.4323282-UTR-M-pyrifera_M_contig10079:9395..94861692277441.4323282-UTR-M-pyrifera_M_contig10079:9395..9486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10079 9396..9486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10079.172.1prot_M-pyrifera_M_contig10079.172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10079 9087..9395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10079.172.1

>prot_M-pyrifera_M_contig10079.172.1 ID=prot_M-pyrifera_M_contig10079.172.1|Name=mRNA_M-pyrifera_M_contig10079.172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
SQRKSVLELIRVFVPGVIGFGLRASPIFKSPLDSFCQTNIQTPPLRDGCG
STRANVVDTTSKVLAVDKKQNDYCPPAKAGPPERKKGGGVPFVREPANHR
NL*
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mRNA from alignment at M-pyrifera_M_contig10079:9087..9486+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10079.172.1 ID=mRNA_M-pyrifera_M_contig10079.172.1|Name=mRNA_M-pyrifera_M_contig10079.172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=400bp|location=Sequence derived from alignment at M-pyrifera_M_contig10079:9087..9486+ (Macrocystis pyrifera P11B4 male)
TCTCAACGTAAGAGCGTGCTTGAGTTGATTCGAGTCTTCGTGCCTGGGGT
TATTGGTTTCGGTCTTCGCGCGTCGCCAATTTTCAAATCACCGCTTGATT
CTTTCTGCCAGACCAACATACAAACACCACCACTGCGTGACGGTTGTGGA
TCGACACGCGCAAACGTCGTCGACACGACCTCTAAAGTTTTGGCGGTAGA
CAAAAAGCAAAATGACTACTGTCCTCCGGCCAAAGCAGGGCCCCCAGAAA
GGAAAAAAGGGGGAGGGGTCCCGTTCGTGCGCGAGCCGGCGAACCACAGG
AATCTCTAGCAAGGTATACGCAAACAAAAAAAATGCGACTGGTTCGAAAG
AACCACAAACTTAGGACAACTCAGCACAAGACCCGTTTCCAGCCCAACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10079:9087..9486+

>mRNA_M-pyrifera_M_contig10079.172.1 ID=mRNA_M-pyrifera_M_contig10079.172.1|Name=mRNA_M-pyrifera_M_contig10079.172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig10079:9087..9486+ (Macrocystis pyrifera P11B4 male)
TCTCAACGTAAGAGCGTGCTTGAGTTGATTCGAGTCTTCGTGCCTGGGGT
TATTGGTTTCGGTCTTCGCGCGTCGCCAATTTTCAAATCACCGCTTGATT
CTTTCTGCCAGACCAACATACAAACACCACCACTGCGTGACGGTTGTGGA
TCGACACGCGCAAACGTCGTCGACACGACCTCTAAAGTTTTGGCGGTAGA
CAAAAAGCAAAATGACTACTGTCCTCCGGCCAAAGCAGGGCCCCCAGAAA
GGAAAAAAGGGGGAGGGGTCCCGTTCGTGCGCGAGCCGGCGAACCACAGG
AATCTCTAGTCTCAACGTAAGAGCGTGCTTGAGTTGATTCGAGTCTTCGT
GCCTGGGGTTATTGGTTTCGGTCTTCGCGCGTCGCCAATTTTCAAATCAC
CGCTTGATTCTTTCTGCCAGACCAACATACAAACACCACCACTGCGTGAC
GGTTGTGGATCGACACGCGCAAACGTCGTCGACACGACCTCTAAAGTTTT
GGCGGTAGACAAAAAGCAAAATGACTACTGTCCTCCGGCCAAAGCAGGGC
CCCCAGAAAGGAAAAAAGGGGGAGGGGTCCCGTTCGTGCGCGAGCCGGCG
AACCACAGGAATCTCTAG
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