mRNA_M-pyrifera_M_contig100642.145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100642.145.1
Unique NamemRNA_M-pyrifera_M_contig100642.145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100642.145.1 vs. uniprot
Match: A0A259MLG9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MLG9_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 1.380e-7
Identity = 47/177 (26.55%), Postives = 71/177 (40.11%), Query Frame = 1 
Query:    1 VLLIVTLCVTSLLCEMFVRWLDGYQVLTVSLKNKDTSQQVTTEKTIEVDFTIEPVAMNYINSTRNVVGINKEWFTQVPPELPNRN--KSPDRDLLARLKT---VPPSYQSESSYVWNYYFLQTQICSKPAGSKREKRQSQYFFNDDDSIYAFKPAPNTPNPVYRFLPNRHYPGGLVT 516
            +LL V LC  + L E  VRWLD  +                              A+ Y++      G+ + WF   PP LPNR    + D +L+ R++       + +++   VWN  F+    C+ P           Y  +    IY + P   +P P +RFLP+   P GLVT
Sbjct:    2 ILLSVVLC--TALAEGMVRWLDAQE---------------------------PSAALRYLDGIPLAEGVQRAWFADDPPPLPNRRTFSASDAELVRRVEASGVTDGTRRADMFKVWNSVFVGPDPCAHP-----------YLKDAPGQIYVYDPPDGSPWPRFRFLPDTTTPIGLVT 138
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BLAST of mRNA_M-pyrifera_M_contig100642.145.1 vs. uniprot
Match: A0A1Q3LIT5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3LIT5_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 2.150e-6
Identity = 45/176 (25.57%), Postives = 68/176 (38.64%), Query Frame = 1 
Query:    4 LLIVTLCVTSLLCEMFVRWLDGYQVLTVSLKNKDTSQQVTTEKTIEVDFTIEPVAMNYINSTRNVVGINKEWFTQVPPELPNRNKSPDR----DL-LARLKTVPPSYQSESSYVWNYYFLQTQICSKPAGSKREKRQSQYFFNDDDSIYAFKPAPNTPNPVYRFLPNRHYPGGLVT 516
            L+ VT+ + ++  E  VRWLD    L                            A  Y++      G+ + WF + PP LPNR   P      DL +A+     P+ ++++   WN  F+    C  P           Y  +    ++ + P    P P YRFLP+   P GLVT
Sbjct:    7 LVAVTIALCTVAAEFMVRWLDSGDDL---------------------------AARQYLDKIPLAPGVERSWFAEDPPPLPNRRAVPAEWRALDLEIAQSGVSGPTRRADAFKAWNSVFV-GDPCQHP-----------YLKDAPGRLFVYDPPDGLPRPPYRFLPDATSPIGLVT 143
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BLAST of mRNA_M-pyrifera_M_contig100642.145.1 vs. uniprot
Match: A0A521RPT6_9HYPH (SGNH/GDSL hydrolase family protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521RPT6_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 2.160e-6
Identity = 35/122 (28.69%), Postives = 56/122 (45.90%), Query Frame = 1 
Query:  166 AMNYINSTRNVVGINKEWFTQVPPELPNRNKSPDR--DLLARLKT---VPPSYQSESSYVWNYYFLQTQICSKPAGSKREKRQSQYFFNDDDSIYAFKPAPNTPNPVYRFLPNRHYPGGLVT 516
            A+ Y++      G+ + WF + PP LPNR+       +L+ R++       + +S+   VWN  F+    C+ P           Y  +    IY + P   +P P +RFLP+   P GLVT
Sbjct:   28 ALRYLDGLPLAEGVQRAWFGENPPPLPNRHAVSTEAIELVRRVEASGVTEGTRRSDMFKVWNSAFVGPDPCAHP-----------YLKDAPGQIYVYDPPDGSPWPRFRFLPDTTTPIGLVT 138
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BLAST of mRNA_M-pyrifera_M_contig100642.145.1 vs. uniprot
Match: A0A521QKQ9_9HYPH (Uncharacterized protein n=2 Tax=Reyranella TaxID=445219 RepID=A0A521QKQ9_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 2.170e-6
Identity = 48/172 (27.91%), Postives = 72/172 (41.86%), Query Frame = 1 
Query:   25 VTSLLCEMFVRWLDGYQVLTVSLKNKDTSQQVTTEKTIEVDFTIEP--VAMNYINSTRNVVGINKEWFTQVPPELPNRNKSPDR--DLLARLKTVPPSYQS----ESSYVWNYYFLQTQICSKPAGSKREKRQSQYFFNDDDSIYAFKPAPNTPNPVYRFLPNRHYPGGLVT 516
            VT+++ E  VR +DGY+ L   L                 D T EP  V   +++      G+++ WF   PP LPNR   P+    L  ++++ PPS  S    ++   WN         +K AG   + R  ++       +Y + P      P YRF PN   P  LVT
Sbjct:   15 VTTIMAEAAVRVIDGYRFLAFPL-----------------DGTAEPTDVPAEWLDKVSLAPGVDRAWFADDPPPLPNRKPVPEEWLRLFRQVESNPPSDGSFRAIDAFRAWN---------AKYAGDPCQNRVLRHA---PGQLYLYDPVDGGALPPYRFPPNATLPNLLVT 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100642.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A259MLG9_9PROT1.380e-726.55Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A1Q3LIT5_9PROT2.150e-625.57Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A521RPT6_9HYPH2.160e-628.69SGNH/GDSL hydrolase family protein n=2 Tax=Alphapr... [more]
A0A521QKQ9_9HYPH2.170e-627.91Uncharacterized protein n=2 Tax=Reyranella TaxID=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100642contigM-pyrifera_M_contig100642:162..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.5141537-CDS-M-pyrifera_M_contig100642:161..6771622815503.5141537-CDS-M-pyrifera_M_contig100642:161..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100642 162..677 +
1692277440.9115572-CDS-M-pyrifera_M_contig100642:161..6771692277440.9115572-CDS-M-pyrifera_M_contig100642:161..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100642 162..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100642.145.1prot_M-pyrifera_M_contig100642.145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100642 162..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100642.145.1

>prot_M-pyrifera_M_contig100642.145.1 ID=prot_M-pyrifera_M_contig100642.145.1|Name=mRNA_M-pyrifera_M_contig100642.145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
VLLIVTLCVTSLLCEMFVRWLDGYQVLTVSLKNKDTSQQVTTEKTIEVDF
TIEPVAMNYINSTRNVVGINKEWFTQVPPELPNRNKSPDRDLLARLKTVP
PSYQSESSYVWNYYFLQTQICSKPAGSKREKRQSQYFFNDDDSIYAFKPA
PNTPNPVYRFLPNRHYPGGLVT
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mRNA from alignment at M-pyrifera_M_contig100642:162..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100642.145.1 ID=mRNA_M-pyrifera_M_contig100642.145.1|Name=mRNA_M-pyrifera_M_contig100642.145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig100642:162..677+ (Macrocystis pyrifera P11B4 male)
GTTTTACTGATTGTTACGTTATGCGTGACTTCACTTTTGTGCGAGATGTT
TGTACGTTGGCTTGATGGCTACCAGGTCTTGACAGTATCTCTTAAAAATA
AAGATACTAGCCAGCAAGTGACAACTGAAAAAACTATTGAGGTTGATTTC
ACCATTGAGCCTGTGGCTATGAATTACATAAATTCAACTCGGAATGTTGT
CGGTATAAATAAAGAATGGTTTACTCAAGTTCCTCCTGAACTGCCTAACC
GTAATAAATCGCCAGACAGGGATTTGCTTGCAAGATTAAAAACAGTTCCC
CCATCATATCAGTCTGAGTCAAGCTACGTTTGGAATTATTATTTTTTACA
GACGCAAATCTGCTCTAAACCAGCTGGGAGTAAACGAGAGAAAAGGCAAT
CCCAATATTTTTTCAATGATGATGATTCGATTTATGCATTTAAACCTGCT
CCGAACACCCCCAATCCTGTATATAGATTTTTGCCCAATAGACATTATCC
AGGAGGACTGGTAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100642:162..677+

>mRNA_M-pyrifera_M_contig100642.145.1 ID=mRNA_M-pyrifera_M_contig100642.145.1|Name=mRNA_M-pyrifera_M_contig100642.145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig100642:162..677+ (Macrocystis pyrifera P11B4 male)
GTTTTACTGATTGTTACGTTATGCGTGACTTCACTTTTGTGCGAGATGTT
TGTACGTTGGCTTGATGGCTACCAGGTCTTGACAGTATCTCTTAAAAATA
AAGATACTAGCCAGCAAGTGACAACTGAAAAAACTATTGAGGTTGATTTC
ACCATTGAGCCTGTGGCTATGAATTACATAAATTCAACTCGGAATGTTGT
CGGTATAAATAAAGAATGGTTTACTCAAGTTCCTCCTGAACTGCCTAACC
GTAATAAATCGCCAGACAGGGATTTGCTTGCAAGATTAAAAACAGTTCCC
CCATCATATCAGTCTGAGTCAAGCTACGTTTGGAATTATTATTTTTTACA
GACGCAAATCTGCTCTAAACCAGCTGGGAGTAAACGAGAGAAAAGGCAAT
CCCAATATTTTTTCAATGATGATGATTCGATTTATGCATTTAAACCTGCT
CCGAACACCCCCAATCCTGTATATAGATTTTTGCCCAATAGACATTATCC
AGGAGGACTGGTAACCGTTTTACTGATTGTTACGTTATGCGTGACTTCAC
TTTTGTGCGAGATGTTTGTACGTTGGCTTGATGGCTACCAGGTCTTGACA
GTATCTCTTAAAAATAAAGATACTAGCCAGCAAGTGACAACTGAAAAAAC
TATTGAGGTTGATTTCACCATTGAGCCTGTGGCTATGAATTACATAAATT
CAACTCGGAATGTTGTCGGTATAAATAAAGAATGGTTTACTCAAGTTCCT
CCTGAACTGCCTAACCGTAATAAATCGCCAGACAGGGATTTGCTTGCAAG
ATTAAAAACAGTTCCCCCATCATATCAGTCTGAGTCAAGCTACGTTTGGA
ATTATTATTTTTTACAGACGCAAATCTGCTCTAAACCAGCTGGGAGTAAA
CGAGAGAAAAGGCAATCCCAATATTTTTTCAATGATGATGATTCGATTTA
TGCATTTAAACCTGCTCCGAACACCCCCAATCCTGTATATAGATTTTTGC
CCAATAGACATTATCCAGGAGGACTGGTAACC
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