mRNA_M-pyrifera_M_contig100622.140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100622.140.1
Unique NamemRNA_M-pyrifera_M_contig100622.140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: COMD4_DICDI (COMM domain-containing protein 4 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=COMD4_DICDI)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-16
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++    K+ L   F + T  LPSL S+DWRVD+++SSN  +EV  P VQLN  V     +E   + FE+ A KF VL
Sbjct:   71 QQLGLPKEHCDSISRAFREHKEKLRSIFHNNTLKLPSLHSLDWRVDFILSSNTIQEVNSPSVQLNFKVKNHSNNEITNHPFEISAKKFNVL 161          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A8J4PJN2_9MYCE (COMM domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJN2_9MYCE)

HSP 1 Score: 79.7 bits (195), Expect = 1.790e-16
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++    K+ L   F + T  LPSL S+DWRVD+++SSN  +EV  P VQLN  +      E   + FE+ A KF VL
Sbjct:   95 QQLGLPKEHCDSISRAFREHKEKLRSIFHNSTLKLPSLHSVDWRVDFLLSSNTVQEVNSPSVQLNFNIKNNSNGEISSHPFEISAKKFNVL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: F0ZJF3_DICPU (COMM domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJF3_DICPU)

HSP 1 Score: 79.3 bits (194), Expect = 2.520e-16
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++    K+ L + F + T  LPSL+S+DWRVD+++SSN  +EV  P VQLN  V      E   + FE+ A KF VL
Sbjct:   95 QQLGLPKEHCDSISRAFREHKEKLRQIFYNNTLKLPSLESLDWRVDFILSSNTIQEVNAPNVQLNFKVKNPSNGEITSHPFEISAKKFNVL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: F4PJX3_CAVFA (Pleckstrin domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PJX3_CAVFA)

HSP 1 Score: 81.3 bits (199), Expect = 5.850e-16
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++   +KD L   F+++T  LP+L+ +DWRVDY++SSN   EV  P VQLN  V +    +  K+ FE+ A KF VL
Sbjct:   94 QQLGLPKEHCDSISRAYRDNKDKLRAIFKNDTLKLPALEKVDWRVDYLLSSNTIPEVNQPNVQLNFTVKDPTTGQVTKHPFEISAKKFNVL 184          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A152A2W4_9MYCE (COMM domain-containing protein 4 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2W4_9MYCE)

HSP 1 Score: 78.2 bits (191), Expect = 7.040e-16
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++   +K+ L   F   T   P LD++DWRVD+++SSN  EEV  P +QLN+ V      E  ++ FE+ A KF VL
Sbjct:   95 QQLGLPKEHCDSISRAFRENKEKLRTIFHSNTLKFPYLDTLDWRVDFLLSSNTVEEVNSPNIQLNLKVKNPSTGEVSQHPFEISAKKFNVL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A0B6ZLN1_9EUPU (COMM domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZLN1_9EUPU)

HSP 1 Score: 76.6 bits (187), Expect = 2.710e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVLV 276
            Q L    EH   +++S +  +  L+EHFR  +  + SLDS+ WRVDYV+SS++ + V  P VQL  G+ +    ++   AF L ADKFRVL+
Sbjct:   94 QQLGLPREHTTSLSRSYSDGQSQLQEHFRSTSLRVSSLDSVQWRVDYVLSSSELQNVNEPSVQLKFGIKDVNSVDSNLVAFTLTADKFRVLL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: UPI000644C0C3 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0C3)

HSP 1 Score: 75.9 bits (185), Expect = 3.480e-15
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVL 273
            Q L    EHCD I+++    KD L   F   T  L S+++IDWRVDY++SSN   EV  P +QLN+ V      E   + FE+ A KF VL
Sbjct:   73 QQLGLPKEHCDSISRAFREHKDKLRSIFHSNTLKLNSIENIDWRVDYLLSSNTVNEVNTPNIQLNLKVRNPSTGETTLHPFEISAKKFNVL 163          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A2C9L1K3_BIOGL (COMM domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L1K3_BIOGL)

HSP 1 Score: 75.5 bits (184), Expect = 7.530e-15
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVLV 276
            Q L    EH   + KS +  + +L+EHFR  +  + +LDS+ WRVDYV+SS++ +EV  P VQL +G+        +   F L ADKFRVL+
Sbjct:   94 QQLGLPKEHTTSLCKSYSDGQSSLQEHFRKTSLRVSNLDSVQWRVDYVLSSSELQEVNEPSVQLKLGIKPGETSHLEPVTFTLTADKFRVLL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A3S1B1W4_ELYCH (COMM domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1B1W4_ELYCH)

HSP 1 Score: 72.4 bits (176), Expect = 1.150e-13
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVLV 276
            Q L    EH   + KS + +   L+E+FR+ +  +  LDS+ WRVDY++SS++   V  P VQL + V +   +E    AF L +DKFRVL+
Sbjct:   94 QQLGLPKEHTTSLCKSYSDAHTKLQENFRESSLRVSMLDSVQWRVDYILSSSELHNVNEPSVQLKLNVKDGSSEEVNPVAFTLTSDKFRVLL 185          
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Match: A0A8B6HQD8_MYTGA (COMM domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6HQD8_MYTGA)

HSP 1 Score: 71.2 bits (173), Expect = 3.180e-13
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMSSNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVLV 276
            Q L    EH   +TKS + S + L+   R  +  L  LDS++WRVDY++SS+  + ++ P VQL + V +   D  K   F + ADKFR+L+
Sbjct:   94 QQLGLPKEHATALTKSYSDSLEKLQAQLRKHSLRLSQLDSVEWRVDYILSSSHLKNIDEPCVQLRLKVRDPNTDNVKPVTFTVTADKFRILL 185          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100622.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
COMD4_DICDI1.090e-1643.96COMM domain-containing protein 4 n=1 Tax=Dictyoste... [more]
A0A8J4PJN2_9MYCE1.790e-1642.86COMM domain-containing protein n=1 Tax=Polysphondy... [more]
F0ZJF3_DICPU2.520e-1643.96COMM domain-containing protein n=1 Tax=Dictyosteli... [more]
F4PJX3_CAVFA5.850e-1643.96Pleckstrin domain-containing protein n=1 Tax=Caven... [more]
A0A152A2W4_9MYCE7.040e-1641.76COMM domain-containing protein 4 n=1 Tax=Tieghemos... [more]
A0A0B6ZLN1_9EUPU2.710e-1541.30COMM domain-containing protein n=1 Tax=Arion vulga... [more]
UPI000644C0C33.480e-1542.86hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2C9L1K3_BIOGL7.530e-1541.30COMM domain-containing protein n=1 Tax=Biomphalari... [more]
A0A3S1B1W4_ELYCH1.150e-1339.13COMM domain-containing protein n=1 Tax=Elysia chlo... [more]
A0A8B6HQD8_MYTGA3.180e-1338.04COMM domain-containing protein n=2 Tax=Mytilus Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100622contigM-pyrifera_M_contig100622:75..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue7.8e-13
Seed eggNOG ortholog44689.DDB0266455
Preferred nameCOMMD4
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Pfam:HCaRG
EggNOG OGs28K8D@1,2QSP3@2759,3X95F@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.2536092-CDS-M-pyrifera_M_contig100622:74..1771622815503.2536092-CDS-M-pyrifera_M_contig100622:74..177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100622 75..177 +
1692277440.7858438-CDS-M-pyrifera_M_contig100622:74..1771692277440.7858438-CDS-M-pyrifera_M_contig100622:74..177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100622 75..177 +
1622815503.2657933-CDS-M-pyrifera_M_contig100622:358..5311622815503.2657933-CDS-M-pyrifera_M_contig100622:358..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100622 359..531 +
1692277440.7966385-CDS-M-pyrifera_M_contig100622:358..5311692277440.7966385-CDS-M-pyrifera_M_contig100622:358..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100622 359..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100622.140.1prot_M-pyrifera_M_contig100622.140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100622 75..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100622.140.1

>prot_M-pyrifera_M_contig100622.140.1 ID=prot_M-pyrifera_M_contig100622.140.1|Name=mRNA_M-pyrifera_M_contig100622.140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
QSLTFVAEHCDVITKSIATSKDALEEHFRDETFTLPSLDSIDWRVDYVMS
SNDAEEVEHPQVQLNIGVLEQGQDEAKKYAFELQADKFRVLV
back to top

mRNA from alignment at M-pyrifera_M_contig100622:75..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100622.140.1 ID=mRNA_M-pyrifera_M_contig100622.140.1|Name=mRNA_M-pyrifera_M_contig100622.140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=457bp|location=Sequence derived from alignment at M-pyrifera_M_contig100622:75..531+ (Macrocystis pyrifera P11B4 male)
CAGAGCCTGACTTTTGTTGCAGAACACTGCGACGTCATCACAAAGTCCAT TGCCACGAGCAAGGACGCCCTGGAGGAGCACTTCCGCGATGAGACCTTCA CTCGTACGCCTGCAAGCCTCAGCTCGCTGCCAATCCTCTGCTCGCTCAGT TGCTGACCCTGTGGGCTCTCGCCTCCTCTCTCTCTCTCTCTCGACCTGTC TTTCAAACTCTCTCTCTCGACCTGTCTTTCAAACTCTCTCTCTCTCGGCC TCTCTTTCTCTCCTGCCATCCCTCCTTTCCATAGTGCCCTCGCTGGACTC CATCGACTGGCGGGTCGACTATGTGATGAGCTCCAACGATGCGGAAGAGG TGGAGCACCCGCAGGTGCAGCTGAACATCGGAGTGCTGGAGCAAGGCCAG GACGAGGCAAAGAAGTACGCCTTCGAGCTCCAGGCAGACAAGTTCCGCGT CCTCGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100622:75..531+

>mRNA_M-pyrifera_M_contig100622.140.1 ID=mRNA_M-pyrifera_M_contig100622.140.1|Name=mRNA_M-pyrifera_M_contig100622.140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig100622:75..531+ (Macrocystis pyrifera P11B4 male)
CAGAGCCTGACTTTTGTTGCAGAACACTGCGACGTCATCACAAAGTCCAT
TGCCACGAGCAAGGACGCCCTGGAGGAGCACTTCCGCGATGAGACCTTCA
CTCCAGAGCCTGACTTTTGTTGCAGAACACTGCGACGTCATCACAAAGTC
CATTGCCACGAGCAAGGACGCCCTGGAGGAGCACTTCCGCGATGAGACCT
TCACTCTGCCCTCGCTGGACTCCATCGACTGGCGGGTCGACTATGTGATG
AGCTCCAACGATGCGGAAGAGGTGGAGCACCCGCAGGTGCAGCTGAACAT
CGGAGTGCTGGAGCAAGGCCAGGACGAGGCAAAGAAGTACGCCTTCGAGC
TCCAGGCAGACAAGTTCCGCGTCCTCGTCTGCCCTCGCTGGACTCCATCG
ACTGGCGGGTCGACTATGTGATGAGCTCCAACGATGCGGAAGAGGTGGAG
CACCCGCAGGTGCAGCTGAACATCGGAGTGCTGGAGCAAGGCCAGGACGA
GGCAAAGAAGTACGCCTTCGAGCTCCAGGCAGACAAGTTCCGCGTCCTCG
TC
back to top