mRNA_M-pyrifera_M_contig100559.126.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100559.126.1
Unique NamemRNA_M-pyrifera_M_contig100559.126.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100559.126.1 vs. uniprot
Match: A0A067CU98_SAPPC (Trafficking protein particle complex subunit 2-like protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU98_SAPPC)

HSP 1 Score: 64.7 bits (156), Expect = 3.330e-11
Identity = 27/74 (36.49%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   34 KVFGYVPSTGIRLFLITRELPLRESALRALLAEVHRVYADTISNPFCAPDAPITSERFKKRLDDLFTKAVQTLE 255
            +V+GYV +T ++L ++ ++ P++ES +R L AE+H++Y + +SNPF      ITSE+F+ ++ +L  +   T+E
Sbjct:   62 RVYGYVTNTLVKLVVVVQDAPIKESEMRVLFAELHKLYVNAMSNPFAIIGERITSEKFESKVYNLILQHNHTIE 135
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BLAST of mRNA_M-pyrifera_M_contig100559.126.1 vs. uniprot
Match: A0A484EFD6_BRELC (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFD6_BRELC)

HSP 1 Score: 63.2 bits (152), Expect = 1.380e-10
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 FVNILLTHELQKVFGYVPSTGIRLFLITRELPLRESALRALLAEVHRVYADTISNPFCAPDAPITSERFKKRLDDL 228
            ++  L T E  +V+GYV +T I+  ++ ++ P+RES LR L  E+HR+Y + +SNPF      +TS+ F K++  +
Sbjct:   57 YLGFLGTIEDYRVYGYVTNTSIKFVVVLQDAPVRESELRPLFLEIHRLYVNAMSNPFAPLGERLTSQTFDKQVSHI 132
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BLAST of mRNA_M-pyrifera_M_contig100559.126.1 vs. uniprot
Match: M4B9A4_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9A4_HYAAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.550e-10
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   25 ELQKVFGYVPSTGIRLFLITRELPLRESALRALLAEVHRVYADTISNPFCAPDAPITSERFKKRLDDL 228
            E  +V+GYV ++ ++  ++ ++ P+RE  LR+LLAEVH +Y + +SNPF      +TS+ F KR+ +L
Sbjct:   10 EDYRVYGYVTNSSVKFVVLLQDAPVREVELRSLLAEVHHLYVNAMSNPFTPLGERLTSQMFDKRVSNL 77
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BLAST of mRNA_M-pyrifera_M_contig100559.126.1 vs. uniprot
Match: A0A1V9Y706_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y706_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.770e-9
Identity = 26/77 (33.77%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   25 ELQKVFGYVPSTGIRLFLITRELPLRESALRALLAEVHRVYADTISNPFCAPDAPITSERFKKRLDDLFTKAVQTLE 255
            E  +V+GYV +T +++ ++ ++ P++ES +R L  E+H++Y + +SNPF      I SE+F+K++ +L  +    LE
Sbjct:   74 EDYRVYGYVTNTLVKIIVVVQDAPIKESEMRNLFTELHKLYVNAMSNPFAIIGERIKSEKFEKKVYNLVLQHNHMLE 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100559.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A067CU98_SAPPC3.330e-1136.49Trafficking protein particle complex subunit 2-lik... [more]
A0A484EFD6_BRELC1.380e-1036.84Trafficking protein particle complex subunit 2-lik... [more]
M4B9A4_HYAAE1.550e-1039.71Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A1V9Y706_9STRA2.770e-933.77Trafficking protein particle complex subunit 2-lik... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100559contigM-pyrifera_M_contig100559:4..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog112098.XP_008610628.1
Preferred nameTRAPPC2L
KEGG koko:K13354,ko:K17622,ko:K20301
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007600,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019233,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0032501,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0050877,GO:0051020,GO:0051179,GO:0051234,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090114,GO:0098772,GO:0099023
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsKOG3444@1,KOG3444@2759
EC3.1.3.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko02000,ko04131
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.4220324-CDS-M-pyrifera_M_contig100559:3..2821622815502.4220324-CDS-M-pyrifera_M_contig100559:3..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100559 4..282 +
1692277440.5287118-CDS-M-pyrifera_M_contig100559:3..2821692277440.5287118-CDS-M-pyrifera_M_contig100559:3..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100559 4..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100559.126.1prot_M-pyrifera_M_contig100559.126.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100559 4..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100559.126.1

>prot_M-pyrifera_M_contig100559.126.1 ID=prot_M-pyrifera_M_contig100559.126.1|Name=mRNA_M-pyrifera_M_contig100559.126.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
FVNILLTHELQKVFGYVPSTGIRLFLITRELPLRESALRALLAEVHRVYA
DTISNPFCAPDAPITSERFKKRLDDLFTKAVQTLEYVPTPSG*
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mRNA from alignment at M-pyrifera_M_contig100559:4..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100559.126.1 ID=mRNA_M-pyrifera_M_contig100559.126.1|Name=mRNA_M-pyrifera_M_contig100559.126.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig100559:4..282+ (Macrocystis pyrifera P11B4 male)
TTTGTAAACATCTTGCTTACCCATGAGTTGCAAAAGGTATTTGGATATGT
ACCTAGCACAGGAATTCGCTTGTTTTTGATAACTCGTGAGCTTCCTCTTC
GAGAATCAGCATTGCGAGCTTTATTGGCCGAAGTACACCGAGTGTATGCA
GATACAATTTCCAACCCCTTCTGTGCTCCAGATGCACCCATTACCAGTGA
GCGATTCAAAAAGAGACTGGACGATTTGTTTACAAAAGCTGTCCAAACGC
TTGAATACGTCCCCACACCCTCTGGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100559:4..282+

>mRNA_M-pyrifera_M_contig100559.126.1 ID=mRNA_M-pyrifera_M_contig100559.126.1|Name=mRNA_M-pyrifera_M_contig100559.126.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig100559:4..282+ (Macrocystis pyrifera P11B4 male)
TTTGTAAACATCTTGCTTACCCATGAGTTGCAAAAGGTATTTGGATATGT
ACCTAGCACAGGAATTCGCTTGTTTTTGATAACTCGTGAGCTTCCTCTTC
GAGAATCAGCATTGCGAGCTTTATTGGCCGAAGTACACCGAGTGTATGCA
GATACAATTTCCAACCCCTTCTGTGCTCCAGATGCACCCATTACCAGTGA
GCGATTCAAAAAGAGACTGGACGATTTGTTTACAAAAGCTGTCCAAACGC
TTGAATACGTCCCCACACCCTCTGGATAATTTGTAAACATCTTGCTTACC
CATGAGTTGCAAAAGGTATTTGGATATGTACCTAGCACAGGAATTCGCTT
GTTTTTGATAACTCGTGAGCTTCCTCTTCGAGAATCAGCATTGCGAGCTT
TATTGGCCGAAGTACACCGAGTGTATGCAGATACAATTTCCAACCCCTTC
TGTGCTCCAGATGCACCCATTACCAGTGAGCGATTCAAAAAGAGACTGGA
CGATTTGTTTACAAAAGCTGTCCAAACGCTTGAATACGTCCCCACACCCT
CTGGATAA
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