mRNA_M-pyrifera_M_contig100555.125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100555.125.1
Unique NamemRNA_M-pyrifera_M_contig100555.125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: A0A7S2V6E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.710e-11
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 KRKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            K +L P+ V VL++W+ SP+H HFP P   E++ L ++T  S +Q+  WF+NAR RIW P
Sbjct:   18 KNELPPQAVKVLKEWLLSPQHIHFPYPTNEEKKDLITKTNISKKQLQTWFTNARRRIWRP 77          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: UPI001C4E6434 (BEL1-like homeodomain protein 4 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E6434)

HSP 1 Score: 57.8 bits (138), Expect = 3.720e-8
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    VA+LR W+   EH   P P   ++E+LASQTG +  QV++WF NAR R+W+P
Sbjct:  627 RGLPEHSVAILRAWLF--EHFLHPYPTDTDKEMLASQTGLTRNQVSNWFINARVRVWKP 683          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: UPI001C5296DA (BEL1-like homeodomain protein 9 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C5296DA)

HSP 1 Score: 57.4 bits (137), Expect = 5.090e-8
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    VA+LR W+   EH   P P   +++LLASQTG +  QV++WF NAR R+W+P
Sbjct:  595 RGLPERAVAILRAWLF--EHFLHPYPTDTDKDLLASQTGLTRNQVSNWFINARVRVWKP 651          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: UPI001CC63006 (BEL1-like homeodomain protein 8 isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC63006)

HSP 1 Score: 56.6 bits (135), Expect = 9.440e-8
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    VA+LR W+   EH   P P   ++++LASQTG +  QV++WF NAR R+W+P
Sbjct:  382 RGLPERSVAILRAWLF--EHFLHPYPTDTDKDMLASQTGLTRNQVSNWFINARVRVWKP 438          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: UPI001CC81E48 (BEL1-like homeodomain protein 8 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC81E48)

HSP 1 Score: 56.6 bits (135), Expect = 9.500e-8
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    VA+LR W+   EH   P P   ++++LASQTG +  QV++WF NAR R+W+P
Sbjct:  558 RGLPENSVAILRAWLF--EHFLHPYPTDTDKDMLASQTGLTRNQVSNWFINARVRVWKP 614          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: A0A6P5ZD61_DURZI (BEL1-like homeodomain protein 11 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZD61_DURZI)

HSP 1 Score: 55.8 bits (133), Expect = 1.750e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    V +LR W+   EH   P P   E+++LASQTG +  Q+++WF NAR R+W+P
Sbjct:  363 RGLPDNSVVILRSWLF--EHFLHPYPTDSEKQMLASQTGLTKNQISNWFINARVRLWKP 419          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: A0A067GYM1_CITSI (Homeobox domain-containing protein n=7 Tax=Citrus TaxID=2706 RepID=A0A067GYM1_CITSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.390e-7
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    V +LR W+   EH   P P   E++LLASQTG +  QV++WF NAR R+W+P
Sbjct:  360 RGLPETSVGILRSWLF--EHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: BLH8_ARATH (BEL1-like homeodomain protein 8 n=5 Tax=Arabidopsis thaliana TaxID=3702 RepID=BLH8_ARATH)

HSP 1 Score: 55.1 bits (131), Expect = 3.300e-7
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    VAVLR W+   +H   P P   ++++LA+QTG S  QV++WF NAR R+W+P
Sbjct:  429 RGLPERAVAVLRAWLF--DHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKP 485          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: A0A7C8YDU9_OPUST (Homeobox domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YDU9_OPUST)

HSP 1 Score: 55.1 bits (131), Expect = 3.300e-7
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L    V++LR W+   +H   P P   ++++LASQTG S  QV++WF NAR R+W+P
Sbjct:  386 RGLPERAVSILRAWLF--DHFLHPYPTDTDKQMLASQTGLSRNQVSNWFINARVRLWKP 442          
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Match: A0A251S672_HELAN (Putative POX (Plant homeobox) family protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S672_HELAN)

HSP 1 Score: 54.7 bits (130), Expect = 4.500e-7
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWFSNARSRIWEP 180
            R L  + V VLR W+   +H   P P   ++++LA+QTG S  QV++WF NAR R+W+P
Sbjct:  345 RGLPKQAVTVLRAWLF--DHFLHPYPTDTDKQMLATQTGLSRNQVSNWFINARVRLWKP 401          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100555.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7S2V6E2_9STRA1.710e-1146.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001C4E64343.720e-847.46BEL1-like homeodomain protein 4 n=1 Tax=Macadamia ... [more]
UPI001C5296DA5.090e-847.46BEL1-like homeodomain protein 9 n=1 Tax=Macadamia ... [more]
UPI001CC630069.440e-845.76BEL1-like homeodomain protein 8 isoform X1 n=2 Tax... [more]
UPI001CC81E489.500e-845.76BEL1-like homeodomain protein 8 n=1 Tax=Telopea sp... [more]
A0A6P5ZD61_DURZI1.750e-744.07BEL1-like homeodomain protein 11 n=1 Tax=Durio zib... [more]
A0A067GYM1_CITSI2.390e-747.46Homeobox domain-containing protein n=7 Tax=Citrus ... [more]
BLH8_ARATH3.300e-745.76BEL1-like homeodomain protein 8 n=5 Tax=Arabidopsi... [more]
A0A7C8YDU9_OPUST3.300e-744.07Homeobox domain-containing protein n=1 Tax=Opuntia... [more]
A0A251S672_HELAN4.500e-744.07Putative POX (Plant homeobox) family protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100555contigM-pyrifera_M_contig100555:206..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog653948.CCA15629
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG0773@1,KOG0773@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.3777013-CDS-M-pyrifera_M_contig100555:205..4001622815502.3777013-CDS-M-pyrifera_M_contig100555:205..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100555 206..400 +
1692277440.5106382-CDS-M-pyrifera_M_contig100555:205..4001692277440.5106382-CDS-M-pyrifera_M_contig100555:205..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100555 206..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100555.125.1prot_M-pyrifera_M_contig100555.125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100555 206..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100555.125.1

>prot_M-pyrifera_M_contig100555.125.1 ID=prot_M-pyrifera_M_contig100555.125.1|Name=mRNA_M-pyrifera_M_contig100555.125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
KRKLAPEGVAVLRKWMESPEHCHFPSPVLWERELLASQTGFSVEQVAHWF
SNARSRIWEPERRSR
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mRNA from alignment at M-pyrifera_M_contig100555:206..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100555.125.1 ID=mRNA_M-pyrifera_M_contig100555.125.1|Name=mRNA_M-pyrifera_M_contig100555.125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig100555:206..400+ (Macrocystis pyrifera P11B4 male)
AAACGAAAGCTAGCCCCTGAAGGTGTTGCTGTGTTGCGAAAGTGGATGGA ATCGCCAGAACATTGCCATTTCCCGTCTCCAGTGCTTTGGGAGCGAGAGC TCCTTGCTTCGCAGACAGGGTTCTCCGTAGAACAAGTGGCCCACTGGTTC TCAAATGCTAGATCCCGCATTTGGGAGCCAGAGAGACGCAGTAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100555:206..400+

>mRNA_M-pyrifera_M_contig100555.125.1 ID=mRNA_M-pyrifera_M_contig100555.125.1|Name=mRNA_M-pyrifera_M_contig100555.125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig100555:206..400+ (Macrocystis pyrifera P11B4 male)
AAACGAAAGCTAGCCCCTGAAGGTGTTGCTGTGTTGCGAAAGTGGATGGA
ATCGCCAGAACATTGCCATTTCCCGTCTCCAGTGCTTTGGGAGCGAGAGC
TCCTTGCTTCGCAGACAGGGTTCTCCGTAGAACAAGTGGCCCACTGGTTC
TCAAATGCTAGATCCCGCATTTGGGAGCCAGAGAGACGCAGTAGAAAACG
AAAGCTAGCCCCTGAAGGTGTTGCTGTGTTGCGAAAGTGGATGGAATCGC
CAGAACATTGCCATTTCCCGTCTCCAGTGCTTTGGGAGCGAGAGCTCCTT
GCTTCGCAGACAGGGTTCTCCGTAGAACAAGTGGCCCACTGGTTCTCAAA
TGCTAGATCCCGCATTTGGGAGCCAGAGAGACGCAGTAGA
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