mRNA_M-pyrifera_M_contig100533.118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100533.118.1
Unique NamemRNA_M-pyrifera_M_contig100533.118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100533.118.1 vs. uniprot
Match: A0A7S0R613_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R613_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 7.400e-6
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 1 
Query:   70 SLTLSYSPPTITSINPTKLLPGEESIDIEVCGENFAPRADD-LDGIWIGGIACASVGVSVENQCAQCFGLKTPGA--PERIIVGGRAATSNILTYVPPPTIISIAPNPAGPGSLLTINGEGFG 429
            S+T +Y+ P +  + P+    G E   + + G+NF P     L+ + IGG+AC +  V+VEN   QC      G   P  I V G+A+         PP +  I P  A  G  + I G  FG
Sbjct: 1669 SVTFNYAKPLVLEVTPS----GTEGGMVTIVGDNFGPAGSPFLESVRIGGVACTTPNVTVENTEIQCLLQAGSGRDLPVIITVNGQASDPWPHYQYLPPVVQQIRPGSAFAGDDVEIEGLSFG 1787
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BLAST of mRNA_M-pyrifera_M_contig100533.118.1 vs. uniprot
Match: UPI001F53D6C9 (FG-GAP-like repeat-containing protein n=1 Tax=Hymenobacter sp. DH14 TaxID=2926463 RepID=UPI001F53D6C9)

HSP 1 Score: 54.3 bits (129), Expect = 9.840e-6
Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 1 
Query:   91 PPTITSINPTKLLPGEESIDIEVCGENFAPRADDLDGIWIGGIACASVGVSVENQCAQCFGLKTPGAPERIIV---GGRAATSNILTYVPPPTIISIAPNPAGPGSLLTINGEGF 426
            PPTI+S +P     G     + V G NF        G+ + G A +  G SV +  +  F +    +   I V   GG A +S   T++PPPTI S+AP  A  G+ +T+ G GF
Sbjct:  611 PPTISSFSPAS---GPVGQTVTVTGTNFTGAT----GLTLNGAAVS--GFSVVSGTSLTFVVPAGASSGPIAVTTPGGTATSSTSFTFLPPPTITSVAPASANTGTSITVTGTGF 716
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100533.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S0R613_9CHLO7.400e-631.71Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI001F53D6C99.840e-633.91FG-GAP-like repeat-containing protein n=1 Tax=Hyme... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100533contigM-pyrifera_M_contig100533:160..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.9826653-CDS-M-pyrifera_M_contig100533:159..4541622815501.9826653-CDS-M-pyrifera_M_contig100533:159..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100533 160..454 +
1692277440.3190966-CDS-M-pyrifera_M_contig100533:159..4541692277440.3190966-CDS-M-pyrifera_M_contig100533:159..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100533 160..454 +
1622815502.0009527-CDS-M-pyrifera_M_contig100533:487..6211622815502.0009527-CDS-M-pyrifera_M_contig100533:487..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100533 488..621 +
1692277440.3439808-CDS-M-pyrifera_M_contig100533:487..6211692277440.3439808-CDS-M-pyrifera_M_contig100533:487..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100533 488..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100533.118.1prot_M-pyrifera_M_contig100533.118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100533 160..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100533.118.1

>prot_M-pyrifera_M_contig100533.118.1 ID=prot_M-pyrifera_M_contig100533.118.1|Name=mRNA_M-pyrifera_M_contig100533.118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
TLPSGVGTSIPVRFLTATNLSSNSLTLSYSPPTITSINPTKLLPGEESID
IEVCGENFAPRADDLDGIWIGGIACASVGVSVENQCAQCFGLKTPGAPER
IIVGGRAATSNILTYVPPPTIISIAPNPAGPGSLLTINGEGFG
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mRNA from alignment at M-pyrifera_M_contig100533:160..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100533.118.1 ID=mRNA_M-pyrifera_M_contig100533.118.1|Name=mRNA_M-pyrifera_M_contig100533.118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig100533:160..621+ (Macrocystis pyrifera P11B4 male)
ACTCTCCCTTCTGGGGTTGGCACATCCATCCCTGTTCGTTTTCTCACAGC
TACCAATCTATCCTCCAACTCCCTTACTCTCTCCTACTCCCCACCAACTA
TTACATCCATCAATCCAACTAAACTGCTCCCTGGCGAGGAATCGATTGAT
ATTGAAGTTTGTGGGGAGAATTTTGCACCACGAGCTGACGACTTGGACGG
AATTTGGATTGGTGGCATTGCATGTGCATCTGTTGGAGTTTCAGTGGAAA
ATCAGTGTGCGCAATGTTTCGGATTAAAGACACCTGGTGCTCCAGGTTCT
CCTCATGCTTCTTGGCCATTGGATGAAGAGAGAATAATCGTTGGTGGAAG
GGCAGCAACATCCAATATACTCACATACGTGCCTCCACCGACAATTATTT
CTATTGCACCAAATCCAGCTGGACCAGGAAGCTTGCTGACAATAAATGGG
GAAGGATTTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100533:160..621+

>mRNA_M-pyrifera_M_contig100533.118.1 ID=mRNA_M-pyrifera_M_contig100533.118.1|Name=mRNA_M-pyrifera_M_contig100533.118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig100533:160..621+ (Macrocystis pyrifera P11B4 male)
ACTCTCCCTTCTGGGGTTGGCACATCCATCCCTGTTCGTTTTCTCACAGC
TACCAATCTATCCTCCAACTCCCTTACTCTCTCCTACTCCCCACCAACTA
TTACATCCATCAATCCAACTAAACTGCTCCCTGGCGAGGAATCGATTGAT
ATTGAAGTTTGTGGGGAGAATTTTGCACCACGAGCTGACGACTTGGACGG
AATTTGGATTGGTGGCATTGCATGTGCATCTGTTGGAGTTTCAGTGGAAA
ATCAGTGTGCGCAATGTTTCGGATTAAAGACACCTGGTGCTCCAGACTCT
CCCTTCTGGGGTTGGCACATCCATCCCTGTTCGTTTTCTCACAGCTACCA
ATCTATCCTCCAACTCCCTTACTCTCTCCTACTCCCCACCAACTATTACA
TCCATCAATCCAACTAAACTGCTCCCTGGCGAGGAATCGATTGATATTGA
AGTTTGTGGGGAGAATTTTGCACCACGAGCTGACGACTTGGACGGAATTT
GGATTGGTGGCATTGCATGTGCATCTGTTGGAGTTTCAGTGGAAAATCAG
TGTGCGCAATGTTTCGGATTAAAGACACCTGGTGCTCCAGAGAGAATAAT
CGTTGGTGGAAGGGCAGCAACATCCAATATACTCACATACGTGCCTCCAC
CGACAATTATTTCTATTGCACCAAATCCAGCTGGACCAGGAAGCTTGCTG
ACAATAAATGGGGAAGGATTTGGAAGAGAATAATCGTTGGTGGAAGGGCA
GCAACATCCAATATACTCACATACGTGCCTCCACCGACAATTATTTCTAT
TGCACCAAATCCAGCTGGACCAGGAAGCTTGCTGACAATAAATGGGGAAG
GATTTGGA
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