mRNA_M-pyrifera_M_contig100517.109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100517.109.1
Unique NamemRNA_M-pyrifera_M_contig100517.109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A1Z5L9I2_ORNMO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L9I2_ORNMO)

HSP 1 Score: 143 bits (361), Expect = 7.520e-41
Identity = 65/102 (63.73%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL C+++I+ +P G+PV ERA+P+AIF AEP+++RHYL++WLK S G+D   IR+I+DW+YY +RLG+ IQKIITIPAALQ VPNPV RV HPSWL K+L E
Sbjct:  134 GLSCRYVISRKPEGSPVTERAIPLAIFQAEPSVKRHYLRRWLKAS-GMDNFDIREILDWDYYVERLGSAIQKIITIPAALQQVPNPVPRVAHPSWLHKRLLE 234
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A8D8B390_CULPI (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8B390_CULPI)

HSP 1 Score: 146 bits (368), Expect = 1.090e-40
Identity = 68/102 (66.67%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL CKFII+ +P GAPV ERA+P+AIF +EP++RRHYL++WLK++T  D D IRD++DW+YY +RLG TIQKIITIPAALQG+ NPV RV HP WL KK+ E
Sbjct:  166 GLACKFIISRKPDGAPVTERAIPLAIFQSEPSVRRHYLRRWLKDNTMGDAD-IRDVLDWQYYIERLGGTIQKIITIPAALQGLNNPVPRVQHPDWLHKKMLE 266
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A1B6K030_9HEMI (DNA polymerase epsilon catalytic subunit (Fragment) n=4 Tax=Homalodisca TaxID=139475 RepID=A0A1B6K030_9HEMI)

HSP 1 Score: 139 bits (351), Expect = 1.530e-40
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL CKFII+ +P GAPV ERA+P+AIF AEP++++HYL+KWLK+++  D+D IR ++DW YY +RLG  IQKIITIPAA+QG+ NPV RV HP WL KK+ E
Sbjct:   18 GLACKFIISRKPDGAPVTERAIPLAIFQAEPSVKKHYLRKWLKDNSINDVD-IRQVLDWNYYIERLGGAIQKIITIPAAMQGLSNPVPRVHHPDWLHKKMLE 118
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: V9IM32_APICE (DNA polymerase epsilon catalytic subunit n=1 Tax=Apis cerana TaxID=7461 RepID=V9IM32_APICE)

HSP 1 Score: 140 bits (354), Expect = 2.660e-40
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL CK+IIAN+P GAPV ERA+P+AIF +EPAIR++YL+KWLK+ + +  D IR+I+DW YY +RLG+ IQKIITIPAA+QG+ NPV RV HP WL K++ E
Sbjct:    6 GLACKYIIANKPQGAPVTERAIPLAIFQSEPAIRKYYLRKWLKDPS-LQNDDIRNILDWSYYIERLGSAIQKIITIPAAMQGLSNPVPRVKHPDWLHKRVME 106
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: UPI00065B8C60 (DNA polymerase epsilon catalytic subunit A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B8C60)

HSP 1 Score: 144 bits (364), Expect = 2.770e-40
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL C+F+I+ +P G+PV ERA+P+AIF AEP +RRHYLKKWLK S    LD IRDI+DWEYY +RLG  IQKIITIPAALQ V NPV R+ HP WL KK+ E
Sbjct:   60 GLSCRFVISKKPEGSPVTERAIPLAIFQAEPTVRRHYLKKWLKLSDASHLD-IRDILDWEYYVERLGGCIQKIITIPAALQAVSNPVPRIPHPDWLRKKMLE 160
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: UPI0006239D1A (LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006239D1A)

HSP 1 Score: 149 bits (377), Expect = 8.610e-40
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL C++IIAN+P  APV ERA+P+AIF +EPA+RRHYLKKWLK+ T +  D IRDI+DW YY +RLG+ IQKIITIPAA+QG+PNPV RV HP WL KK++E
Sbjct: 1066 GLACRYIIANKPQSAPVTERAIPLAIFQSEPAVRRHYLKKWLKDPT-LYSDDIRDILDWNYYIERLGSAIQKIITIPAAMQGLPNPVPRVQHPPWLLKKVSE 1166
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A553PC44_TIGCA (DNA polymerase epsilon catalytic subunit n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PC44_TIGCA)

HSP 1 Score: 149 bits (377), Expect = 8.610e-40
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL C+FII+ +P GAPV ERA+P+AIF +EP++RRHYL+KWLK++T  D D IR ++DW YY +RLG TIQKIITIPAALQG+PNPV R+ HP WL KK+ E
Sbjct: 1072 GLSCRFIISKKPEGAPVTERAIPLAIFESEPSVRRHYLRKWLKDNTMTDFD-IRKVLDWGYYVERLGGTIQKIITIPAALQGIPNPVPRIAHPDWLHKKIME 1172
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: UPI001ED8739E (DNA polymerase epsilon catalytic subunit 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8739E)

HSP 1 Score: 149 bits (377), Expect = 8.610e-40
Identity = 67/102 (65.69%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL CKFII+ +P GAPV ERA+P+AIF +EP+++RHYL+KWLK+ST  D+D IRD++DW+YY +RLG T+QKIITIPAA+QG+PNPV R+ HP WL KK+ E
Sbjct: 1067 GLACKFIISRKPDGAPVTERAIPLAIFQSEPSVKRHYLRKWLKDSTIDDVD-IRDVLDWDYYIERLGGTVQKIITIPAAMQGLPNPVPRIRHPDWLHKKMVE 1167
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A4S2KFY2_9HYME (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2KFY2_9HYME)

HSP 1 Score: 149 bits (376), Expect = 1.180e-39
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL C++IIAN+P  APV ERA+P+AIF +EPA+RRHYLKKWLK+ T +  D IRDI+DW YY +RLG+ IQKIITIPAA+QG+PNPV RV HP WL KK++E
Sbjct: 1065 GLACRYIIANKPQSAPVTERAIPLAIFQSEPAVRRHYLKKWLKDPT-LYSDDIRDILDWNYYIERLGSAIQKIITIPAAMQGLPNPVPRVQHPPWLHKKVSE 1165
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BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Match: A0A182GFR7_AEDAL (DNA polymerase epsilon catalytic subunit n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GFR7_AEDAL)

HSP 1 Score: 148 bits (374), Expect = 2.180e-39
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDLDSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKLNE 306
            GL CKF+I+ +P GAPV ERA+P+AIF +EP+IRRHYL+KWLK+ST  D D IRD++DW+YY +RLG TIQKIITIPAALQG+ NPV RV HP WL KK+ E
Sbjct: 1049 GLACKFVISKKPDGAPVTERAIPLAIFQSEPSIRRHYLRKWLKDSTMGDAD-IRDVLDWQYYIERLGGTIQKIITIPAALQGLNNPVPRVQHPEWLHKKMLE 1149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100517.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5L9I2_ORNMO7.520e-4163.73DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A8D8B390_CULPI1.090e-4066.67DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A1B6K030_9HEMI1.530e-4062.75DNA polymerase epsilon catalytic subunit (Fragment... [more]
V9IM32_APICE2.660e-4063.73DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
UPI00065B8C602.770e-4066.67DNA polymerase epsilon catalytic subunit A n=1 Tax... [more]
UPI0006239D1A8.610e-4067.65LOW QUALITY PROTEIN: DNA polymerase epsilon cataly... [more]
A0A553PC44_TIGCA8.610e-4065.69DNA polymerase epsilon catalytic subunit n=1 Tax=T... [more]
UPI001ED8739E8.610e-4065.69DNA polymerase epsilon catalytic subunit 1 n=1 Tax... [more]
A0A4S2KFY2_9HYME1.180e-3967.65Eukaryotic translation initiation factor 3 subunit... [more]
A0A182GFR7_AEDAL2.180e-3968.63DNA polymerase epsilon catalytic subunit n=3 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100517contigM-pyrifera_M_contig100517:273..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score150.6
Seed ortholog evalue4e-34
Seed eggNOG ortholog7159.AAEL002800-PA
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035265,GO:0040007,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0048589,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase
EggNOG OGs38CFB@33154,3BBCV@33208,3CUK2@33213,3SKNV@50557,41WI0@6656,451JH@7147,45B8Q@7148,COG0417@1,KOG1798@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.574226-CDS-M-pyrifera_M_contig100517:272..5781622815501.574226-CDS-M-pyrifera_M_contig100517:272..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100517 273..578 -
1692277440.1050303-CDS-M-pyrifera_M_contig100517:272..5781692277440.1050303-CDS-M-pyrifera_M_contig100517:272..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100517 273..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100517.109.1prot_M-pyrifera_M_contig100517.109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100517 273..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100517.109.1

>prot_M-pyrifera_M_contig100517.109.1 ID=prot_M-pyrifera_M_contig100517.109.1|Name=mRNA_M-pyrifera_M_contig100517.109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
GLQCKFIIANRPAGAPVVERALPVAIFSAEPAIRRHYLKKWLKNSTGIDL
DSIRDIIDWEYYKKRLGATIQKIITIPAALQGVPNPVARVVHPSWLTKKL
NE
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mRNA from alignment at M-pyrifera_M_contig100517:273..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100517.109.1 ID=mRNA_M-pyrifera_M_contig100517.109.1|Name=mRNA_M-pyrifera_M_contig100517.109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig100517:273..578- (Macrocystis pyrifera P11B4 male)
GGCTTGCAGTGCAAGTTCATCATCGCCAACAGGCCTGCTGGTGCTCCTGT
TGTGGAGAGAGCCCTCCCCGTGGCGATTTTCTCAGCAGAGCCGGCCATCA
GGAGACACTACTTGAAGAAGTGGCTGAAGAACTCCACTGGTATTGATCTG
GACTCCATCCGAGACATCATCGACTGGGAGTACTACAAGAAGAGGCTGGG
TGCCACCATCCAGAAGATCATCACCATCCCTGCTGCTCTCCAAGGGGTAC
CAAACCCTGTCGCCAGGGTCGTCCACCCGAGCTGGCTCACGAAGAAGCTC
AACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100517:273..578-

>mRNA_M-pyrifera_M_contig100517.109.1 ID=mRNA_M-pyrifera_M_contig100517.109.1|Name=mRNA_M-pyrifera_M_contig100517.109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig100517:273..578- (Macrocystis pyrifera P11B4 male)
GGCTTGCAGTGCAAGTTCATCATCGCCAACAGGCCTGCTGGTGCTCCTGT
TGTGGAGAGAGCCCTCCCCGTGGCGATTTTCTCAGCAGAGCCGGCCATCA
GGAGACACTACTTGAAGAAGTGGCTGAAGAACTCCACTGGTATTGATCTG
GACTCCATCCGAGACATCATCGACTGGGAGTACTACAAGAAGAGGCTGGG
TGCCACCATCCAGAAGATCATCACCATCCCTGCTGCTCTCCAAGGGGTAC
CAAACCCTGTCGCCAGGGTCGTCCACCCGAGCTGGCTCACGAAGAAGCTC
AACGAGGGCTTGCAGTGCAAGTTCATCATCGCCAACAGGCCTGCTGGTGC
TCCTGTTGTGGAGAGAGCCCTCCCCGTGGCGATTTTCTCAGCAGAGCCGG
CCATCAGGAGACACTACTTGAAGAAGTGGCTGAAGAACTCCACTGGTATT
GATCTGGACTCCATCCGAGACATCATCGACTGGGAGTACTACAAGAAGAG
GCTGGGTGCCACCATCCAGAAGATCATCACCATCCCTGCTGCTCTCCAAG
GGGTACCAAACCCTGTCGCCAGGGTCGTCCACCCGAGCTGGCTCACGAAG
AAGCTCAACGAG
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