mRNA_M-pyrifera_M_contig100506.106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100506.106.1
Unique NamemRNA_M-pyrifera_M_contig100506.106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100506.106.1 vs. uniprot
Match: A0A6U1VWE9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1VWE9_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 2.210e-21
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    4 KKCSSWTGT-FYSQDTIKSLYEILAIKQSYGTSYRDFVYLMQSAGEEQKLMKLKDKQVRHYVHETILEQFARHFIKGFVQLMLELGFDPKIKV 279
            KK + +  T FY++DTIK+LY IL+I QSYG  +R F  LMQ    E+ L K KD+ +  Y+HE +L++F   FIKGFV LMLELGFDPKI+V
Sbjct:  138 KKPAQYPSTIFYTEDTIKTLYNILSINQSYGIGWRQFFDLMQQTAVEEDLTK-KDECI-DYIHEDVLKKFLGSFIKGFVNLMLELGFDPKIEV 228
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BLAST of mRNA_M-pyrifera_M_contig100506.106.1 vs. uniprot
Match: L8GRK0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRK0_ACACA)

HSP 1 Score: 65.9 bits (159), Expect = 7.740e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   37 SQDTIKSLYEILAIKQSYGTSYRDFVYLMQSAGEEQKL--MKLKDKQVRHYVHETILEQFARHFIKGFVQLMLELGFD 264
            S+ T++ +++IL IK++YG   R+F  LMQ A EE     M L+++ +  YV   ++ QFA  F+KGFV LM ELGF+
Sbjct:  171 SRGTVQLIHKILNIKKAYGVDDREFFNLMQRAAEEMVFDWMNLENEDLDEYVPILVMHQFASDFVKGFVNLMFELGFE 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100506.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6U1VWE9_9EUKA2.210e-2154.84Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8GRK0_ACACA7.740e-1143.59Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100506contigM-pyrifera_M_contig100506:39..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue8e-13
Seed eggNOG ortholog5786.XP_003293619.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DKED@1,2S62M@2759,3X90I@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.3598137-CDS-M-pyrifera_M_contig100506:38..1821622815501.3598137-CDS-M-pyrifera_M_contig100506:38..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100506 39..182 +
1692277439.9534354-CDS-M-pyrifera_M_contig100506:38..1821692277439.9534354-CDS-M-pyrifera_M_contig100506:38..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100506 39..182 +
1622815501.37203-CDS-M-pyrifera_M_contig100506:233..3741622815501.37203-CDS-M-pyrifera_M_contig100506:233..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100506 234..374 +
1692277439.964447-CDS-M-pyrifera_M_contig100506:233..3741692277439.964447-CDS-M-pyrifera_M_contig100506:233..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100506 234..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100506.106.1prot_M-pyrifera_M_contig100506.106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100506 39..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100506.106.1

>prot_M-pyrifera_M_contig100506.106.1 ID=prot_M-pyrifera_M_contig100506.106.1|Name=mRNA_M-pyrifera_M_contig100506.106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
TKKCSSWTGTFYSQDTIKSLYEILAIKQSYGTSYRDFVYLMQSAGEEQKL
MKLKDKQVRHYVHETILEQFARHFIKGFVQLMLELGFDPKIKVT*
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mRNA from alignment at M-pyrifera_M_contig100506:39..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100506.106.1 ID=mRNA_M-pyrifera_M_contig100506.106.1|Name=mRNA_M-pyrifera_M_contig100506.106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig100506:39..374+ (Macrocystis pyrifera P11B4 male)
ACGAAGAAGTGCTCGAGCTGGACTGGTACATTCTACTCACAGGACACCAT
CAAATCGCTCTATGAGATTCTAGCCATCAAGCAATCCTATGGAACCTCCT
ACCGAGATTTTGTGTATCTCATGCAGTCGGCAGGCGAGGAACAGGTAGGA
AAGGCGCGGCCGCGGCAGCCGAGCGCGTGCTGACAAGTTTTGCAGAAACT
CATGAAGCTCAAGGACAAACAAGTTCGGCACTACGTGCACGAGACGATAC
TGGAGCAGTTTGCACGGCACTTCATCAAAGGATTCGTGCAGCTCATGCTA
GAACTGGGCTTTGATCCGAAGATCAAGGTCACATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100506:39..374+

>mRNA_M-pyrifera_M_contig100506.106.1 ID=mRNA_M-pyrifera_M_contig100506.106.1|Name=mRNA_M-pyrifera_M_contig100506.106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig100506:39..374+ (Macrocystis pyrifera P11B4 male)
ACGAAGAAGTGCTCGAGCTGGACTGGTACATTCTACTCACAGGACACCAT
CAAATCGCTCTATGAGATTCTAGCCATCAAGCAATCCTATGGAACCTCCT
ACCGAGATTTTGTGTATCTCATGCAGTCGGCAGGCGAGGAACAGACGAAG
AAGTGCTCGAGCTGGACTGGTACATTCTACTCACAGGACACCATCAAATC
GCTCTATGAGATTCTAGCCATCAAGCAATCCTATGGAACCTCCTACCGAG
ATTTTGTGTATCTCATGCAGTCGGCAGGCGAGGAACAGAAACTCATGAAG
CTCAAGGACAAACAAGTTCGGCACTACGTGCACGAGACGATACTGGAGCA
GTTTGCACGGCACTTCATCAAAGGATTCGTGCAGCTCATGCTAGAACTGG
GCTTTGATCCGAAGATCAAGGTCACATGAAAACTCATGAAGCTCAAGGAC
AAACAAGTTCGGCACTACGTGCACGAGACGATACTGGAGCAGTTTGCACG
GCACTTCATCAAAGGATTCGTGCAGCTCATGCTAGAACTGGGCTTTGATC
CGAAGATCAAGGTCACATGA
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