mRNA_M-pyrifera_M_contig100500.103.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100500.103.1
Unique NamemRNA_M-pyrifera_M_contig100500.103.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: I2JIF5_9GAMM (Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 TaxID=1168065 RepID=I2JIF5_9GAMM)

HSP 1 Score: 249 bits (636), Expect = 1.190e-82
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAAA 381
            LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAAA
Sbjct:   22 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAAA 148          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A5P9NHU9_9GAMM (Glutathione S-transferase family protein n=1 Tax=Halioglobus maricola TaxID=2601894 RepID=A0A5P9NHU9_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 2.480e-30
Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAA 378
            L D    G +LG + P+++ P +RYCLK+QP   V+ K+ KHP+P+R  G  + R +P+P  ++ KS+  + + L NIE  L  G +Y+ G F+Q D+MM AHFHRLE+VALG +L +  LPNI+A
Sbjct:  116 LRDDGEFGTTLGMAIPMVSSPAIRYCLKRQPFWHVMRKFSKHPLPSRGIGFRVLRIMPVPRGITDKSVAAIAQALVNIENELSGGDDYILGSFTQVDVMMMAHFHRLEDVALGEVLVDGTLPNISA 241          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A660ZR49_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A660ZR49_9BACT)

HSP 1 Score: 115 bits (288), Expect = 2.970e-28
Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAA 378
            L D    G +LGT+ P+++ PV+R CL++ P   V+WK+R HP+P RR    +AR +P+P  L   +   +   L NIE  L   +++L G F+  D+M+ AHFHRLE+VALG++L+ E LP  AA
Sbjct:  114 LRDDVQFGANLGTAIPLVSAPVIRACLRKLPLWHVMWKFRMHPVPDRRRRFPLARVIPIPNKLLLPAFVTIARALANIEGALSDREDWLLGPFTMVDVMLMAHFHRLEDVALGSVLDHELLPKTAA 239          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A2A4RUG5_9HYPH (GST N-terminal domain-containing protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4RUG5_9HYPH)

HSP 1 Score: 110 bits (274), Expect = 3.840e-26
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAA 378
            L D   +G +LGT+ P+L+ P+++ CLK+QP   V+WK+RKHP   R     + R   LP  LS ++++ + + L  IE  L     ++ GEFSQ D+MM AHFHR+E+VALG +   + LPN+ A
Sbjct:  115 LRDDAKVGRTLGTAIPILSAPIIQTCLKRQPFFHVMWKFRKHPRRDRAALFRLLRIRGLPRGLSARAVKTIAQGLLRIERQLAKSGPFILGEFSQIDVMMMAHFHRMEDVALGDVFASQHLPNLGA 240          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A2A5EPL3_9HYPH (GST N-terminal domain-containing protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EPL3_9HYPH)

HSP 1 Score: 109 bits (273), Expect = 5.490e-26
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKYRKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAA 378
            L D  A   +LGT+ PV+++P+++ CLK+QP   V+WK+RKHP   R       R   +P ++S ++++ +   L  IE  L  G  +LFG+F+Q DIMM AHFHRLE+V LG +L  E LP +AA
Sbjct:  116 LRDDAAPARTLGTAIPVVSVPIIQACLKRQPFFHVMWKFRKHPKRERAALFRFLRVRSIPKTISDRAVRTIAVSLSRIEDALAKGGPWLFGDFTQIDIMMMAHFHRLEDVHLGEVLRSEDLPFVAA 241          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A2Z4ULM7_9HYPH (Tetrachloro-P-hydroquinone reductive dehalogenase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4ULM7_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 1.860e-17
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 LDDSRALGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKY-RKHPIPARRWGISMARSLP-LPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNIAA 378
            LD    LG + GTS    +  +L   L+++PAL+V+W Y  KHP+  R    ++ R    LP  L +K + ++   L + E  L  G++YLFG+++  D MM AHFHRLE+VALG IL  +  PNI A
Sbjct:  112 LDRDVELGGNFGTSVAGASTYLLANILQRRPALAVIWDYFLKHPMKERAVAFTILRLRGGLPDKLYKKFVSSLATGLLSTETALDHGKDYLFGDYTMIDTMMTAHFHRLEDVALGDILLSDDFPNIKA 239          
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Match: A0A368BFW3_9GAMM (Glutathione S-transferase family protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A368BFW3_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.320e-5
Identity = 34/119 (28.57%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   19 LGVSLGTSTPVLTLPVLRYCLKQQPALSVLWKY-RKHPIPARRWGISMARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAAHFHRLEEVALGAILEEEKLPNI 372
            LG ++GTS P+ +  ++   +K+  + S +WK  +KHP P R+    +     L   +   + +   + +  +E  L + +E+LF +FS ADI +    HRL ++ + +ILE ++L N+
Sbjct:  119 LGKTIGTSIPLFSAGLIENMIKKL-SFSAIWKILKKHPRPERKRAFLLMYFFSLKNKIGPIAYKGFVKGILELETAL-NDKEFLFNDFSHADINLMCCLHRLVDLRMDSILEMDELKNV 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100500.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
I2JIF5_9GAMM1.190e-82100.00Uncharacterized protein n=1 Tax=gamma proteobacter... [more]
A0A5P9NHU9_9GAMM2.480e-3045.24Glutathione S-transferase family protein n=1 Tax=H... [more]
A0A660ZR49_9BACT2.970e-2842.86Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A2A4RUG5_9HYPH3.840e-2642.06GST N-terminal domain-containing protein n=1 Tax=R... [more]
A0A2A5EPL3_9HYPH5.490e-2643.65GST N-terminal domain-containing protein n=1 Tax=R... [more]
A0A2Z4ULM7_9HYPH1.860e-1740.63Tetrachloro-P-hydroquinone reductive dehalogenase ... [more]
A0A368BFW3_9GAMM1.320e-528.57Glutathione S-transferase family protein n=1 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100500contigM-pyrifera_M_contig100500:2..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100500.103.1prot_M-pyrifera_M_contig100500.103.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100500 158..385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.1979432-UTR-M-pyrifera_M_contig100500:1..1571622815501.1979432-UTR-M-pyrifera_M_contig100500:1..157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100500 2..157 +
1692277439.8931289-UTR-M-pyrifera_M_contig100500:1..1571692277439.8931289-UTR-M-pyrifera_M_contig100500:1..157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100500 2..157 +
1622815501.2312531-UTR-M-pyrifera_M_contig100500:385..5131622815501.2312531-UTR-M-pyrifera_M_contig100500:385..513Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100500 386..513 +
1692277439.911321-UTR-M-pyrifera_M_contig100500:385..5131692277439.911321-UTR-M-pyrifera_M_contig100500:385..513Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100500 386..513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.2177835-CDS-M-pyrifera_M_contig100500:157..3851622815501.2177835-CDS-M-pyrifera_M_contig100500:157..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100500 158..385 +
1692277439.902496-CDS-M-pyrifera_M_contig100500:157..3851692277439.902496-CDS-M-pyrifera_M_contig100500:157..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100500 158..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100500.103.1

>prot_M-pyrifera_M_contig100500.103.1 ID=prot_M-pyrifera_M_contig100500.103.1|Name=mRNA_M-pyrifera_M_contig100500.103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MARSLPLPPSLSRKSLQNVGEELKNIEAMLQSGQEYLFGEFSQADIMMAA
HFHRLEEVALGAILEEEKLPNIAAA*
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mRNA from alignment at M-pyrifera_M_contig100500:2..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100500.103.1 ID=mRNA_M-pyrifera_M_contig100500.103.1|Name=mRNA_M-pyrifera_M_contig100500.103.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=512bp|location=Sequence derived from alignment at M-pyrifera_M_contig100500:2..513+ (Macrocystis pyrifera P11B4 male)
CTGGATGATTCCCGTGCCCTGGGCGTATCACTCGGCACCTCAACTCCCGT GCTCACACTACCGGTGTTGCGCTACTGCCTTAAGCAACAACCGGCGCTCT CAGTATTGTGGAAGTACCGCAAGCACCCTATTCCCGCACGCCGCTGGGGT ATAAGTATGGCCCGCTCGCTACCGTTACCGCCCTCACTATCCAGAAAATC ACTGCAAAATGTGGGCGAGGAATTGAAAAACATCGAGGCTATGCTGCAAT CAGGACAGGAGTATTTGTTTGGCGAATTCAGCCAAGCCGATATTATGATG GCGGCACACTTCCACCGACTGGAAGAAGTTGCACTCGGCGCAATTCTTGA AGAAGAAAAGCTCCCAAATATCGCCGCCGCTTGAAGAGTCGCCCCGCCTA CGAAAAAGCGATTACCGAGTGGCACGACCCAATCTGGCGGGAAGCGCTGG ACGCGGTATTTAAAGGCCAGCCTTCACCAGATTTGGAAAAAATCCGAACA ATAGCCACCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100500:2..513+

>mRNA_M-pyrifera_M_contig100500.103.1 ID=mRNA_M-pyrifera_M_contig100500.103.1|Name=mRNA_M-pyrifera_M_contig100500.103.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig100500:2..513+ (Macrocystis pyrifera P11B4 male)
ATGGCCCGCTCGCTACCGTTACCGCCCTCACTATCCAGAAAATCACTGCA
AAATGTGGGCGAGGAATTGAAAAACATCGAGGCTATGCTGCAATCAGGAC
AGGAGTATTTGTTTGGCGAATTCAGCCAAGCCGATATTATGATGGCGGCA
CACTTCCACCGACTGGAAGAAGTTGCACTCGGCGCAATTCTTGAAGAAGA
AAAGCTCCCAAATATCGCCGCCGCTTGAATGGCCCGCTCGCTACCGTTAC
CGCCCTCACTATCCAGAAAATCACTGCAAAATGTGGGCGAGGAATTGAAA
AACATCGAGGCTATGCTGCAATCAGGACAGGAGTATTTGTTTGGCGAATT
CAGCCAAGCCGATATTATGATGGCGGCACACTTCCACCGACTGGAAGAAG
TTGCACTCGGCGCAATTCTTGAAGAAGAAAAGCTCCCAAATATCGCCGCC
GCTTGA
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