mRNA_M-pyrifera_M_contig10047.100.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10047.100.1
Unique NamemRNA_M-pyrifera_M_contig10047.100.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10047.100.1 vs. uniprot
Match: D7G232_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G232_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.560e-48
Identity = 87/102 (85.29%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 KNAALLEELDVAEGKVAELLEVAARALDELAGVELLNSAKVEASTKEFLELVSSVHDILSSKSSLVRDYTPYPRSIYGPRKELELLHEKARFLRATLASVSR 306
            KNAALLEELD AEGKVAELLEVAA ALDELAGVE L+S+KVEASTK+FLELVSSVH  LSSK+ L+RDYTPYPRSIYGPRKELELLHEKARFLR TLA +S+
Sbjct:   38 KNAALLEELDAAEGKVAELLEVAADALDELAGVESLDSSKVEASTKKFLELVSSVHGTLSSKAELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLAELSK 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10047.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G232_ECTSI1.560e-4885.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10047contigM-pyrifera_M_contig10047:5057..5362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.4e-08
Seed eggNOG ortholog112098.XP_008605591.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1P9@1,2S8ZH@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003640.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.780623-CDS-M-pyrifera_M_contig10047:5056..53621622815500.780623-CDS-M-pyrifera_M_contig10047:5056..5362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10047 5057..5362 -
1692277439.6879244-CDS-M-pyrifera_M_contig10047:5056..53621692277439.6879244-CDS-M-pyrifera_M_contig10047:5056..5362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10047 5057..5362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10047.100.1prot_M-pyrifera_M_contig10047.100.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10047 5057..5362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10047.100.1

>prot_M-pyrifera_M_contig10047.100.1 ID=prot_M-pyrifera_M_contig10047.100.1|Name=mRNA_M-pyrifera_M_contig10047.100.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
KNAALLEELDVAEGKVAELLEVAARALDELAGVELLNSAKVEASTKEFLE
LVSSVHDILSSKSSLVRDYTPYPRSIYGPRKELELLHEKARFLRATLASV
SR
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mRNA from alignment at M-pyrifera_M_contig10047:5057..5362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10047.100.1 ID=mRNA_M-pyrifera_M_contig10047.100.1|Name=mRNA_M-pyrifera_M_contig10047.100.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:5057..5362- (Macrocystis pyrifera P11B4 male)
AAAAATGCCGCACTTCTGGAGGAGCTCGACGTTGCGGAGGGGAAGGTCGC
CGAGCTCCTAGAGGTCGCTGCGAGGGCATTGGACGAGCTTGCTGGGGTAG
AGTTGTTGAACAGTGCCAAGGTCGAGGCGTCGACTAAGGAGTTCTTGGAG
TTGGTGTCTTCGGTGCACGATATCCTGTCATCGAAGTCGAGCTTGGTTCG
AGACTATACCCCATATCCACGTAGTATTTACGGGCCGCGAAAGGAGCTCG
AGCTTCTCCACGAGAAGGCAAGGTTCTTGCGAGCAACGTTGGCCAGTGTG
TCGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10047:5057..5362-

>mRNA_M-pyrifera_M_contig10047.100.1 ID=mRNA_M-pyrifera_M_contig10047.100.1|Name=mRNA_M-pyrifera_M_contig10047.100.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig10047:5057..5362- (Macrocystis pyrifera P11B4 male)
AAAAATGCCGCACTTCTGGAGGAGCTCGACGTTGCGGAGGGGAAGGTCGC
CGAGCTCCTAGAGGTCGCTGCGAGGGCATTGGACGAGCTTGCTGGGGTAG
AGTTGTTGAACAGTGCCAAGGTCGAGGCGTCGACTAAGGAGTTCTTGGAG
TTGGTGTCTTCGGTGCACGATATCCTGTCATCGAAGTCGAGCTTGGTTCG
AGACTATACCCCATATCCACGTAGTATTTACGGGCCGCGAAAGGAGCTCG
AGCTTCTCCACGAGAAGGCAAGGTTCTTGCGAGCAACGTTGGCCAGTGTG
TCGAGAAAAAATGCCGCACTTCTGGAGGAGCTCGACGTTGCGGAGGGGAA
GGTCGCCGAGCTCCTAGAGGTCGCTGCGAGGGCATTGGACGAGCTTGCTG
GGGTAGAGTTGTTGAACAGTGCCAAGGTCGAGGCGTCGACTAAGGAGTTC
TTGGAGTTGGTGTCTTCGGTGCACGATATCCTGTCATCGAAGTCGAGCTT
GGTTCGAGACTATACCCCATATCCACGTAGTATTTACGGGCCGCGAAAGG
AGCTCGAGCTTCTCCACGAGAAGGCAAGGTTCTTGCGAGCAACGTTGGCC
AGTGTGTCGAGA
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