mRNA_M-pyrifera_M_contig100442.93.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100442.93.1
Unique NamemRNA_M-pyrifera_M_contig100442.93.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A5A8DA50_CAFRO (SIS domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DA50_CAFRO)

HSP 1 Score: 150 bits (379), Expect = 8.060e-40
Identity = 80/147 (54.42%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    4 LTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGAS 444
            +TGIGKS AVA R S SLRS+G+R+ F+HG EW HGD+G L  GDVV+A SHSG T ELV LA  ++ R    W +VG   S +    DG  + APAT ELL  VP+RSIVAQEM+ANA++  +     + +  FR NHPGGAIG S
Sbjct:  445 VTGIGKSAAVAGRLSASLRSVGLRACFLHGTEWLHGDVGMLGQGDVVVAFSHSGETAELVALAGLVKSRGAAYWGVVGAQQSSMHGVCDG-VVSAPATEELLGAVPSRSIVAQEMVANAVVGGVVEALGVTKEAFRANHPGGAIGHS 590          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A397AJG4_9STRA (SIS domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AJG4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.530e-36
Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGAS 444
            Y TGIGKSG VA RF+ +L SL + S ++HG+EW HG+LG L  GDVV+  S+SG T ELV L    R  D  +  +VG  +SPL  A+D   I  PA   L D VP RSIVAQE + NA+   +   T + + TF+KNHPGG IGA+
Sbjct:   32 YTTGIGKSGIVAKRFASTLSSLSIPSQWIHGSEWTHGELGNLLPGDVVVLFSNSGKTPELVNLPNVFRQFDCDVLCLVGNDDSPLYHASDF-KIFTPAKDCLFDSVPARSIVAQEAVCNAVAESVVAITGIQRATFKKNHPGGNIGAA 178          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A7S1C2S7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2S7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.790e-34
Identity = 72/146 (49.32%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIG 438
            +++GIGKSG VASR ++SL SLGV + +VHG EW HGDLG +++GDVV+A+S+SG T EL+  A  +  +   + +IVG  +SPL +A+    + AP+ +ELLD VPTRSIV    + NA+LS +A    +D   FR +HPGGA+G
Sbjct:  265 FVSGIGKSGLVASRMALSLMSLGVPAQYVHGTEWLHGDLGAIRSGDVVVAISNSGTTRELLAAAGHISAKGADVVSIVGVIDSPLARASRH-VLWAPSDSELLDCVPTRSIVVATAVVNAVLSEVAAVAGIDAGDFRSHHPGGALG 409          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: W2PGQ2_PHYPN (SIS domain-containing protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PGQ2_PHYPN)

HSP 1 Score: 127 bits (320), Expect = 1.010e-33
Identity = 73/147 (49.66%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGA 441
            ++TG+GKSGAVA R + +L S+ + S ++HG EW HG+LGGLK GDVVI +SHSG T EL+ L    R     + AIVG   SPL +  D  +IVAPA  E+   VP+RSI+ QE I NAI+  L           R++HPGGAIGA
Sbjct:  100 FVTGMGKSGAVAQRLASTLSSISISSQWIHGGEWVHGELGGLKQGDVVIIVSHSGRTSELLPLPDLFRKSGCSVMAIVGDSCSPLSKNCDW-SIVAPAEDEVDCPVPSRSIIVQEAICNAIIQHLIENMADGADVLRESHPGGAIGA 245          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A3R7AAB4_9STRA (SIS domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AAB4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.230e-33
Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGAS 444
            Y TGIGKSG VA RF+ +L SL + S ++HG+EW HG+LG L  GDVV+  S+SG T ELV L    R  D  +  +VG  +SPL  A+D   I  PA   L D VP RSIVAQE + NA+   +   T + + TF+KNHPGG IGA+
Sbjct:  384 YTTGIGKSGIVAKRFASTLSSLSIPSQWIHGSEWTHGELGNLLPGDVVVLFSNSGKTPELVNLPNVFRQFDCDVMCLVGNDDSPLYHASDF-KIFTPAKDCLFDSVPARSIVAQEAVCNAVAESVVAITGIQRATFKKNHPGGNIGAA 530          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A329SIF2_9STRA (SIS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SIF2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.500e-33
Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILS-LLAHQTELDQHTFRKNHPGGAIGA 441
            ++TG+GKSGAVA R + +L S+ + S +VHG EW HG+LGGLK GDVVI +SHSG T EL+ L    R     + AIVG   SPL +  D  +IVAPA  E    VP+RSI+ QE I NAIL  L+ + T+   H  R++HPGGAIGA
Sbjct:  102 FVTGMGKSGAVAQRLASTLSSISISSQWVHGGEWVHGELGGLKHGDVVIIISHSGRTSELLPLPDMFRKAGCCVMAIVGDGRSPLSKDCDL-SIVAPAEDEANCPVPSRSIIVQEAICNAILQHLIENMTDGADH-LRESHPGGAIGA 247          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A067CQJ8_SAPPC (SIS domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQJ8_SAPPC)

HSP 1 Score: 132 bits (332), Expect = 3.040e-33
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIG 438
            YL+GIGKSG VA RF+ +L SL V S ++HG+EW HG+LG L  GDVVI +S+SG T EL+ L    R+ +V +  +VG  +SPL +A+D   I  PA   L D VPTRSIV QE + NA+   +   T + + TF+KNHPGG IG
Sbjct:  422 YLSGIGKSGIVARRFASTLASLSVPSQWIHGSEWTHGELGNLYPGDVVILISNSGKTPELLHLPDVFREFEVDVLCLVGNEDSPLFKASDF-PIYTPAEDWLFDSVPTRSIVTQESVCNAVAESVVALTGIKRCTFKKNHPGGNIG 566          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A1W0A990_9STRA (Fructokinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A990_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.510e-32
Identity = 72/146 (49.32%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIG 438
            YL+GIGKSG VA RF+ +L SL + S ++HG+EW HG+LG L  GDVVI +S+SG T EL+ L    R+ +V +  +VG  +SPL +++D   I  PA   L D VPTRSIV QE + NA+   +   T + + TF+KNHPGG IG
Sbjct:  417 YLSGIGKSGIVARRFASTLSSLSIPSQWIHGSEWTHGELGNLFPGDVVILISNSGKTPELLHLPDVFREFEVDVLCLVGNEDSPLFKSSDF-PIYTPAEDWLFDSVPTRSIVTQESVCNAVAESVVALTGIKRCTFKKNHPGGNIG 561          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A024TR32_9STRA (SIS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR32_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.560e-32
Identity = 71/147 (48.30%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGA 441
            Y +GIGKSG VA RF+ +L SL + S ++HG+EW HG+LG L  GDV++  S+SG T EL+ L    R+ D  +  +VG  +SPL  A+D   I  PA   L D VP RSIVAQE + NA+   +   T + + TF+KNHPGG IGA
Sbjct:  418 YTSGIGKSGIVAKRFASTLSSLSIPSQWIHGSEWTHGELGNLLPGDVIVLFSNSGKTPELLNLPNVFREFDCDVMCVVGNDDSPLYHASDY-KIFTPAKDCLFDSVPARSIVAQEAVCNAVAESVVAITGIKRATFKKNHPGGNIGA 563          
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Match: A0A3R6WIF0_9STRA (SIS domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WIF0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.770e-32
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIAMSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATAELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGA 441
            Y +GIGKSG VA RF+ +L SL + S ++HG+EW HG+LG L  GDV++  S+SG T EL+ L     + D  +  +VG  +SPL  A+D   I  PA   L D VP+RSIVAQE + NA+   +   T + + TF+KNHPGG IGA
Sbjct:  293 YTSGIGKSGIVAKRFASTLSSLSIPSQWIHGSEWTHGELGNLLPGDVIVLFSNSGKTPELLNLPNVFHEFDCDVMCVVGNDDSPLYHASDY-KIFTPAKDCLFDSVPSRSIVAQEAVCNAVAESVVAITGIKRATFKKNHPGGNIGA 438          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100442.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DA50_CAFRO8.060e-4054.42SIS domain-containing protein n=3 Tax=Cafeteria ro... [more]
A0A397AJG4_9STRA2.530e-3650.00SIS domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A7S1C2S7_9STRA1.790e-3449.32Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
W2PGQ2_PHYPN1.010e-3349.66SIS domain-containing protein n=9 Tax=Phytophthora... [more]
A0A3R7AAB4_9STRA1.230e-3350.00SIS domain-containing protein n=7 Tax=Aphanomyces ... [more]
A0A329SIF2_9STRA1.500e-3352.03SIS domain-containing protein n=2 Tax=Phytophthora... [more]
A0A067CQJ8_SAPPC3.040e-3350.68SIS domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A1W0A990_9STRA1.510e-3249.32Fructokinase n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A024TR32_9STRA1.560e-3248.30SIS domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A3R6WIF0_9STRA1.770e-3247.62SIS domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100442contigM-pyrifera_M_contig100442:40..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue3.3e-29
Seed eggNOG ortholog112098.XP_008609210.1
KEGG rclassRC00541
KEGG koko:K06041
KEGG ReactionR01530
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00063
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.arabinose-5-phosphate isomerase activity
EggNOG OGs2RDRP@2759,COG0794@1
EC5.3.1.13
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4731188-CDS-M-pyrifera_M_contig100442:39..4921622815500.4731188-CDS-M-pyrifera_M_contig100442:39..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100442 40..492 +
1692277439.569114-CDS-M-pyrifera_M_contig100442:39..4921692277439.569114-CDS-M-pyrifera_M_contig100442:39..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100442 40..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100442.93.1prot_M-pyrifera_M_contig100442.93.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100442 40..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100442.93.1

>prot_M-pyrifera_M_contig100442.93.1 ID=prot_M-pyrifera_M_contig100442.93.1|Name=mRNA_M-pyrifera_M_contig100442.93.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
YLTGIGKSGAVASRFSVSLRSLGVRSAFVHGAEWAHGDLGGLKAGDVVIA
MSHSGNTEELVRLAPELRDRDVKLWAIVGRPNSPLQQAADGGTIVAPATA
ELLDLVPTRSIVAQEMIANAILSLLAHQTELDQHTFRKNHPGGAIGASNS
*
back to top

mRNA from alignment at M-pyrifera_M_contig100442:40..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100442.93.1 ID=mRNA_M-pyrifera_M_contig100442.93.1|Name=mRNA_M-pyrifera_M_contig100442.93.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig100442:40..492+ (Macrocystis pyrifera P11B4 male)
TATTTGACCGGAATCGGGAAATCGGGGGCCGTGGCCAGCCGTTTTTCGGT TTCTCTGCGTTCCCTCGGCGTGCGAAGCGCGTTTGTGCACGGCGCAGAGT GGGCGCATGGGGATTTGGGGGGGTTGAAGGCCGGAGACGTCGTCATAGCC ATGTCGCATTCGGGAAATACGGAGGAACTCGTGCGATTGGCCCCCGAACT GAGGGACCGAGATGTCAAACTATGGGCCATCGTGGGCAGGCCAAACTCCC CGCTGCAACAAGCCGCAGACGGAGGCACCATCGTCGCTCCAGCCACCGCG GAACTCCTAGACCTCGTCCCAACAAGATCCATCGTCGCACAGGAAATGAT CGCAAACGCCATCCTATCCCTCCTCGCACACCAAACCGAACTGGACCAGC ACACCTTCCGCAAAAACCACCCGGGAGGAGCGATTGGAGCGTCCAATTCC TAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100442:40..492+

>mRNA_M-pyrifera_M_contig100442.93.1 ID=mRNA_M-pyrifera_M_contig100442.93.1|Name=mRNA_M-pyrifera_M_contig100442.93.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig100442:40..492+ (Macrocystis pyrifera P11B4 male)
TATTTGACCGGAATCGGGAAATCGGGGGCCGTGGCCAGCCGTTTTTCGGT
TTCTCTGCGTTCCCTCGGCGTGCGAAGCGCGTTTGTGCACGGCGCAGAGT
GGGCGCATGGGGATTTGGGGGGGTTGAAGGCCGGAGACGTCGTCATAGCC
ATGTCGCATTCGGGAAATACGGAGGAACTCGTGCGATTGGCCCCCGAACT
GAGGGACCGAGATGTCAAACTATGGGCCATCGTGGGCAGGCCAAACTCCC
CGCTGCAACAAGCCGCAGACGGAGGCACCATCGTCGCTCCAGCCACCGCG
GAACTCCTAGACCTCGTCCCAACAAGATCCATCGTCGCACAGGAAATGAT
CGCAAACGCCATCCTATCCCTCCTCGCACACCAAACCGAACTGGACCAGC
ACACCTTCCGCAAAAACCACCCGGGAGGAGCGATTGGAGCGTCCAATTCC
TAATATTTGACCGGAATCGGGAAATCGGGGGCCGTGGCCAGCCGTTTTTC
GGTTTCTCTGCGTTCCCTCGGCGTGCGAAGCGCGTTTGTGCACGGCGCAG
AGTGGGCGCATGGGGATTTGGGGGGGTTGAAGGCCGGAGACGTCGTCATA
GCCATGTCGCATTCGGGAAATACGGAGGAACTCGTGCGATTGGCCCCCGA
ACTGAGGGACCGAGATGTCAAACTATGGGCCATCGTGGGCAGGCCAAACT
CCCCGCTGCAACAAGCCGCAGACGGAGGCACCATCGTCGCTCCAGCCACC
GCGGAACTCCTAGACCTCGTCCCAACAAGATCCATCGTCGCACAGGAAAT
GATCGCAAACGCCATCCTATCCCTCCTCGCACACCAAACCGAACTGGACC
AGCACACCTTCCGCAAAAACCACCCGGGAGGAGCGATTGGAGCGTCCAAT
TCCTAA
back to top