mRNA_M-pyrifera_M_contig100440.92.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100440.92.1
Unique NamemRNA_M-pyrifera_M_contig100440.92.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A804KMM4_MUSAM (60S ribosomal protein L6 n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KMM4_MUSAM)

HSP 1 Score: 99.8 bits (247), Expect = 2.380e-23
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLD--ETTSAYLKAKFKLSSHSRPHEMKF 378
            LL + GP+ +NGVPLRRVNQAYVIATS K+DISGV V      D ++++ K      ++ T+ GE  FF  D    KA +PQE+KD Q+AVD  ++++++  E    YL A+F L S  +PHE+KF
Sbjct:  118 LLLVTGPFKINGVPLRRVNQAYVIATSTKVDISGVNVDKF--DDKYFTKEK------KKTTKKGEGEFFETDKEETKA-LPQEKKDDQKAVDSQLIKAIEAVEDLKVYLGARFSLRSGMKPHELKF 234          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A812L9C5_9DINO (RPL6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L9C5_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 4.000e-23
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLDETTSAYLKAKFKLSSHSRPHEMKF 378
            LL + GP+++NGVPLRR+NQ Y IAT  KLD+SGV++P +   D+F+ + KAAK  +  A    + A  A   VT+      E+K  Q+AVD AI  +L     AYLK+ F LS H +PHEMKF
Sbjct:   66 LLLVTGPFSVNGVPLRRLNQVYAIATELKLDVSGVKLPESV-NDSFFKKTKAAKGKKSEADFMAQGAAAAGPVVTD------EKKSIQKAVDAAIEGALGADEKAYLKSLFSLSKHDKPHEMKF 182          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A7S1LWQ5_ALECA (Hypothetical protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LWQ5_ALECA)

HSP 1 Score: 95.9 bits (237), Expect = 2.250e-22
Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLDETTSAYLKAKFKLSSHSRPHEMKF 378
            LL + GPYA+NG+PLRRVNQ Y IATS K+D+ G    +    DA++      +  +++  +  E  FFAP+   E+  + +E+KD Q+ +DEA+V  LD T   YLK+ F LS    PHEMKF
Sbjct:   67 LLLVTGPYAVNGIPLRRVNQRYCIATSHKVDVGGADYSSVG--DAYFKR----EEDKKKKAKKTESGFFAPE--AERKGMSEEKKDGQKKMDEAVVGKLDATEKMYLKSLFSLSEKMYPHEMKF 182          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A3B4XB13_SERLL (60S ribosomal protein L6 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A3B4XB13_SERLL)

HSP 1 Score: 94.4 bits (233), Expect = 1.080e-21
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLDETTSA-YLKAKFKLSSHSRPHEMKF 378
            LL + GPY +NG+PLRRVNQAYVIATS K+D+SGV    A   D+++ + KA K  ++ A    E+A   P+       +  ERK  Q AVD A+++SL E   A YLKA+F LS   +PH MKF
Sbjct:   75 LLLVTGPYQVNGIPLRRVNQAYVIATSTKVDVSGVDT--AKFVDSYFGKAKAGKKDKKSAEEMFEEAKATPE-------VSAERKADQAAVDAALMKSLKEPLMAKYLKARFSLSKADKPHLMKF 190          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: E6R752_CRYGW (60S ribosomal protein L6 n=13 Tax=Cryptococcus TaxID=5206 RepID=E6R752_CRYGW)

HSP 1 Score: 95.1 bits (235), Expect = 1.470e-21
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLD--ETTSAYLKAKFKLSSHSRPHEMKF 378
            LL ++GP+ LNGVPLRRV+QAYVIATS K+DIS V +P +  +DA++++ KAAKA++       E  FF   +  EK   P+E+K  Q+AVD A++ S+   E  S YLK+ + LS   R HE+KF
Sbjct:  120 LLLVSGPHKLNGVPLRRVSQAYVIATSTKVDISSVSIPESI-SDAYFAKAKAAKASK-------EGEFFG--EGKEKKAFPEEKKAEQKAVDAALIASIKKVENLSKYLKSSWGLSKSDRFHELKF 235          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A484DQP3_BRELC (60S ribosomal protein L6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQP3_BRELC)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-21
Identity = 56/126 (44.44%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLDETT--SAYLKAKFKLSSHSRPHEMKF 378
            LL + GPY +NGVPLRRVNQ+YVIATS K++I G+ +PA    DA++++ K +K+++       E+ FFA  +V     IP++RK+ Q++VD A+++ LD      AYL AKF L+ + R H +KF
Sbjct:  109 LLLVTGPYKVNGVPLRRVNQSYVIATSTKVNIEGLELPAV--DDAYFAKEKISKSSK-------EEQFFAQSNVAPV--IPEQRKNDQKSVDSALLKKLDAEPFLKAYLNAKFSLTKNDRVHALKF 223          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A2I0AXU1_9ASPA (60S ribosomal protein L6 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AXU1_9ASPA)

HSP 1 Score: 94.4 bits (233), Expect = 2.730e-21
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLDETTS--AYLKAKFKLSSHSRPHEMKF 378
            LL + GP+ +NGVPLRRVNQ YVIATS K+DISGV V      D F       +  R++    GE  FF  D   +KA +PQE+KDAQ+AVD  +++++D      AYL A+F L    +PHE+KF
Sbjct:  116 LLLVTGPFKINGVPLRRVNQVYVIATSTKVDISGVNV------DKFDDRYFMKEKQRKKKKTEGE--FFEADKEEKKA-LPQEKKDAQKAVDTPLLKAVDAVADLRAYLGARFSLKDGMKPHELKF 232          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: Q9SMI5_CYAPA (60S ribosomal protein L6 n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q9SMI5_CYAPA)

HSP 1 Score: 94.0 bits (232), Expect = 2.750e-21
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSL--DETTSAYLKAKFKLSSHSRPHEMKF 378
            LL + GPY LNGVPLRRVNQ+YVIATS K+D+S V V      D ++ + KAA      A + GEDAFF  ++  +K +I  ERK  Q+AVD +I+ ++  D+   AYL A+F L+    PHEMKF
Sbjct:  101 LLLVTGPYKLNGVPLRRVNQSYVIATSTKVDVSKVDVKKF--DDNYFKKPKAA------AAKKGEDAFFQSEE--KKKEIKPERKTDQKAVDASIIAAVKKDKVLRAYLHARFTLTKGQFPHEMKF 216          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A813A1W2_9DINO (60S ribosomal protein L6 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1W2_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 2.870e-21
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSL--DETTSAYLKAKFKLSSHSRPHEMKF 378
            LL + GPY +NGVPLRR++Q+YVIATS K+D+SGV +P +   D F    K++KA RR    + ++ FF   +  +K D+P ER +AQ+ VD AI+ SL  D+   AYL A+F L++ +  HE+KF
Sbjct:  104 LLLVTGPYKVNGVPLRRLDQSYVIATSTKIDVSGVSIPESVNDDFF----KSSKADRR----SDKEKFF---NKPKKVDMPAERTEAQKKVDNAILSSLSKDKLLKAYLNARFSLTNGTYAHELKF 218          
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Match: A0A1B9INX4_9TREE (60S ribosomal protein L6 n=5 Tax=Kwoniella TaxID=490731 RepID=A0A1B9INX4_9TREE)

HSP 1 Score: 94.4 bits (233), Expect = 2.900e-21
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 LLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYSEGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRSLD--ETTSAYLKAKFKLSSHSRPHEMKF 378
            LL ++GP+ +NGVPLRRV+QAYVIATS K+DISGV VP     DAF+ + KAAK ++       E  FF   +  EK   P+E+K  Q+AVD A++ S+   +  + YLKA + LS   R HE+KF
Sbjct:  120 LLLVSGPFKINGVPLRRVSQAYVIATSTKVDISGVSVPETV-NDAFFIKSKAAKGSK-------EGEFFG--EGKEKKVFPEEKKSEQKAVDAALIASIKKVDNLAKYLKASWGLSKGDRFHELKF 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100440.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A804KMM4_MUSAM2.380e-2346.8360S ribosomal protein L6 n=1 Tax=Musa acuminata su... [more]
A0A812L9C5_9DINO4.000e-2346.77RPL6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1LWQ5_ALECA2.250e-2243.55Hypothetical protein n=2 Tax=Alexandrium catenella... [more]
A0A3B4XB13_SERLL1.080e-2147.2060S ribosomal protein L6 n=2 Tax=Eukaryota TaxID=2... [more]
E6R752_CRYGW1.470e-2147.6260S ribosomal protein L6 n=13 Tax=Cryptococcus Tax... [more]
A0A484DQP3_BRELC2.270e-2144.4460S ribosomal protein L6 n=1 Tax=Bremia lactucae T... [more]
A0A2I0AXU1_9ASPA2.730e-2146.8360S ribosomal protein L6 n=1 Tax=Apostasia shenzhe... [more]
Q9SMI5_CYAPA2.750e-2148.4160S ribosomal protein L6 n=1 Tax=Cyanophora parado... [more]
A0A813A1W2_9DINO2.870e-2146.0360S ribosomal protein L6 n=1 Tax=Symbiodinium sp. ... [more]
A0A1B9INX4_9TREE2.900e-2147.6260S ribosomal protein L6 n=5 Tax=Kwoniella TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100440contigM-pyrifera_M_contig100440:178..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue7.7e-19
Seed eggNOG ortholog4641.GSMUA_Achr9P22280_001
Preferred nameRPL6
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0012505,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eL6 family
EggNOG OGs37QK3@33090,3GEFF@35493,3M2TB@4447,COG2163@1,KOG1694@2759
COG Functional cat.J
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4376378-CDS-M-pyrifera_M_contig100440:177..5581622815500.4376378-CDS-M-pyrifera_M_contig100440:177..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100440 178..558 +
1692277439.5584497-CDS-M-pyrifera_M_contig100440:177..5581692277439.5584497-CDS-M-pyrifera_M_contig100440:177..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100440 178..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100440.92.1prot_M-pyrifera_M_contig100440.92.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100440 178..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100440.92.1

>prot_M-pyrifera_M_contig100440.92.1 ID=prot_M-pyrifera_M_contig100440.92.1|Name=mRNA_M-pyrifera_M_contig100440.92.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MVLLGIAGPYALNGVPLRRVNQAYVIATSKKLDISGVRVPAAAATDAFYS
EGKAAKAARRRATRAGEDAFFAPDDVTEKADIPQERKDAQRAVDEAIVRS
LDETTSAYLKAKFKLSSHSRPHEMKF*
back to top

mRNA from alignment at M-pyrifera_M_contig100440:178..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100440.92.1 ID=mRNA_M-pyrifera_M_contig100440.92.1|Name=mRNA_M-pyrifera_M_contig100440.92.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig100440:178..558+ (Macrocystis pyrifera P11B4 male)
ATGGTTTTGCTCGGCATTGCAGGTCCGTATGCGTTGAACGGGGTTCCATT GCGCCGCGTGAACCAGGCGTACGTGATTGCGACAAGCAAGAAGCTGGACA TTTCTGGAGTCCGCGTTCCAGCCGCTGCCGCCACCGATGCCTTCTACAGC GAGGGCAAGGCGGCCAAGGCAGCTCGCCGCCGCGCCACCAGGGCCGGAGA AGATGCCTTCTTTGCCCCAGACGACGTTACAGAAAAGGCAGACATCCCCC AGGAGCGAAAGGACGCCCAGCGCGCTGTCGATGAGGCCATCGTGCGATCC CTCGACGAAACCACCTCCGCATACCTCAAGGCAAAGTTCAAGCTCTCCTC CCACTCCCGCCCACACGAGATGAAGTTCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100440:178..558+

>mRNA_M-pyrifera_M_contig100440.92.1 ID=mRNA_M-pyrifera_M_contig100440.92.1|Name=mRNA_M-pyrifera_M_contig100440.92.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig100440:178..558+ (Macrocystis pyrifera P11B4 male)
ATGGTTTTGCTCGGCATTGCAGGTCCGTATGCGTTGAACGGGGTTCCATT
GCGCCGCGTGAACCAGGCGTACGTGATTGCGACAAGCAAGAAGCTGGACA
TTTCTGGAGTCCGCGTTCCAGCCGCTGCCGCCACCGATGCCTTCTACAGC
GAGGGCAAGGCGGCCAAGGCAGCTCGCCGCCGCGCCACCAGGGCCGGAGA
AGATGCCTTCTTTGCCCCAGACGACGTTACAGAAAAGGCAGACATCCCCC
AGGAGCGAAAGGACGCCCAGCGCGCTGTCGATGAGGCCATCGTGCGATCC
CTCGACGAAACCACCTCCGCATACCTCAAGGCAAAGTTCAAGCTCTCCTC
CCACTCCCGCCCACACGAGATGAAGTTCTAAATGGTTTTGCTCGGCATTG
CAGGTCCGTATGCGTTGAACGGGGTTCCATTGCGCCGCGTGAACCAGGCG
TACGTGATTGCGACAAGCAAGAAGCTGGACATTTCTGGAGTCCGCGTTCC
AGCCGCTGCCGCCACCGATGCCTTCTACAGCGAGGGCAAGGCGGCCAAGG
CAGCTCGCCGCCGCGCCACCAGGGCCGGAGAAGATGCCTTCTTTGCCCCA
GACGACGTTACAGAAAAGGCAGACATCCCCCAGGAGCGAAAGGACGCCCA
GCGCGCTGTCGATGAGGCCATCGTGCGATCCCTCGACGAAACCACCTCCG
CATACCTCAAGGCAAAGTTCAAGCTCTCCTCCCACTCCCGCCCACACGAG
ATGAAGTTCTAA
back to top