mRNA_M-pyrifera_M_contig10043.89.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10043.89.1
Unique NamemRNA_M-pyrifera_M_contig10043.89.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10043.89.1 vs. uniprot
Match: D7G3H3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3H3_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 2.720e-69
Identity = 119/188 (63.30%), Postives = 141/188 (75.00%), Query Frame = 1 
Query:    4 QNIMANVGSAGEGKMDESKTEMAEGDS-RPAHARALRWGDTEAVKELMEVLETGHFDLVLGSDLIYPEQASSSGRKNALPLMDVKVRDLMATAAAALREGGTFLLAHEIRSDLRDVMTLLETHAIDHGFGPPHAVRMEGGPQRVVLSLVHSGKVSGGHQPAEKSEGADDASQGWRELVDVMLASGFGS 564
            +NI  NV SAGEGK DE+K E  E D  RPAHAR LRWG+ E   +LMEVLE GHFD+V+GSDLIYPE+   S     +P MDVKVRDLM TAAAALREGGT LLAHE R +L++V+ L+E HAI +GFG P AVR+E  P+R++LSLV  GK +G H  AEKSE ADDA+QGW ELV  + A+GFGS
Sbjct:  123 ENISTNVSSAGEGKEDEAKMEYKECDEGRPAHARELRWGNAEEAHDLMEVLEMGHFDMVMGSDLIYPEKPKKS---EWMPRMDVKVRDLMVTAAAALREGGTLLLAHENRGNLQEVLALMEKHAIANGFGNPSAVRVESNPERIILSLVFGGKTAGTHA-AEKSEFADDAAQGWVELVTCLQATGFGS 306
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10043.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H3_ECTSI2.720e-6963.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10043contigM-pyrifera_M_contig10043:130..3753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-19_004610.1
Exons4
Model size573
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10043.89.1prot_M-pyrifera_M_contig10043.89.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10043 142..3753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.2610369-UTR-M-pyrifera_M_contig10043:129..1411622815500.2610369-UTR-M-pyrifera_M_contig10043:129..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10043 130..141 +
1692277439.4915745-UTR-M-pyrifera_M_contig10043:129..1411692277439.4915745-UTR-M-pyrifera_M_contig10043:129..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10043 130..141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.2751572-CDS-M-pyrifera_M_contig10043:141..3611622815500.2751572-CDS-M-pyrifera_M_contig10043:141..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 142..361 +
1692277439.5047228-CDS-M-pyrifera_M_contig10043:141..3611692277439.5047228-CDS-M-pyrifera_M_contig10043:141..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 142..361 +
1622815500.2863035-CDS-M-pyrifera_M_contig10043:1055..11891622815500.2863035-CDS-M-pyrifera_M_contig10043:1055..1189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 1056..1189 +
1692277439.5125422-CDS-M-pyrifera_M_contig10043:1055..11891692277439.5125422-CDS-M-pyrifera_M_contig10043:1055..1189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 1056..1189 +
1622815500.2971506-CDS-M-pyrifera_M_contig10043:2066..21651622815500.2971506-CDS-M-pyrifera_M_contig10043:2066..2165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 2067..2165 +
1692277439.5210528-CDS-M-pyrifera_M_contig10043:2066..21651692277439.5210528-CDS-M-pyrifera_M_contig10043:2066..2165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 2067..2165 +
1622815500.3119853-CDS-M-pyrifera_M_contig10043:3645..37531622815500.3119853-CDS-M-pyrifera_M_contig10043:3645..3753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 3646..3753 +
1692277439.5288117-CDS-M-pyrifera_M_contig10043:3645..37531692277439.5288117-CDS-M-pyrifera_M_contig10043:3645..3753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10043 3646..3753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10043.89.1

>prot_M-pyrifera_M_contig10043.89.1 ID=prot_M-pyrifera_M_contig10043.89.1|Name=mRNA_M-pyrifera_M_contig10043.89.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
MANVGSAGEGKMDESKTEMAEGDSRPAHARALRWGDTEAVKELMEVLETG
HFDLVLGSDLIYPEQASSSGRKNALPLMDVKVRDLMATAAAALREGGTFL
LAHEIRSDLRDVMTLLETHAIDHGFGPPHAVRMEGGPQRVVLSLVHSGKV
SGGHQPAEKSEGADDASQGWRELVDVMLASGFGSER*
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mRNA from alignment at M-pyrifera_M_contig10043:130..3753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10043.89.1 ID=mRNA_M-pyrifera_M_contig10043.89.1|Name=mRNA_M-pyrifera_M_contig10043.89.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3624bp|location=Sequence derived from alignment at M-pyrifera_M_contig10043:130..3753+ (Macrocystis pyrifera P11B4 male)
CAACAGAACATCATGGCGAACGTTGGCAGCGCCGGGGAGGGCAAGATGGA
TGAGTCCAAGACGGAGATGGCGGAAGGGGATAGCCGCCCGGCCCACGCGC
GAGCCCTTCGGTGGGGGGACACGGAGGCTGTGAAAGAGCTCATGGAGGTC
TTGGAAACGGGCCACTTCGACCTCGTGCTCGGCTCTGACCTCATATACCC
AGAGCAGGCAAGTAGCTCGGGGAGGAAAAACGGTACATACACATCTTGTT
TTATTCGTTTTTACCAGTGTCTACTCGCTTTTGCTTGTGGGAGAGAACCC
GTTTTTTTTCCATCAACGTTTTGTTAACACAGCTTGTTTGCGCCGTTTTT
TTTTTTTTTCTTTCGTCTTGGATTTTTTTTTTCGTTTTGTGTTGTTTCTG
TCGCGAACCGTTGTGTTTTTCGTACAGTTCAGTTATTTTTATTCCAAGTT
GCGTTTCCGGGTGTTTCGCCTATTCTTAGTATTGCGTTTTCTTCCGGCCC
CGTTTTATAGTGTTGCGTTTTCTTAAGCGTTGCGTTGCGTTTTTTATGTC
GCGATATTTATCGTGGTAGGTTTCTACCTTGTAGCGAAGCGTTACCTCCC
CCCCCCACCCCCGCGCGCGCGCTGCATGAAGTGCCTATTATTAGTGTATA
TCTAATCCCAGCTGTATCGATTGTCGGTACTCGGCAGACAATGGAAGCTG
TCGACCCAACGCGCTTAATCCCTTCCCTCTCCCCCACCCCGGCCCCCGCC
CCCGCCCTCACCCCGCGTCCTCCTTAGCCCCATCCCAACCCCGATCACCA
CCTCAACCTCAACCGCAGCCCCCCCACCCCCACTCCCGCCTCCCTCCCCT
GGTCCTTCGTTGGCGCTAATCTCGTTCCATCTGATTGCAAACCATGTTAA
TACTAAAAAGGTGAAAAAAACAGAAGCGCTTCCGTTGATGGACGTGAAAG
TTCGAGACCTGATGGCAACCGCCGCGGCCGCGCTCCGGGAGGGCGGTACC
TTCCTCCTCGCGCACGAGATCCGATCCGACTTGAGGGACGTCATGACGCT
GTTGGAGACGGTGAGGTTGTGTTCCCCCCCCTCCTCCTATATCGCCCCTT
CCTCTCCCTTCCCTCCTTCCTTCCCTCTCTCCGCCCCTCCCTCCCTCCCT
CCCTCCCTCCTACGTCCGTCCCCCCCTCCCTTCCTCCTAGTTTATAGGTA
TGGCACGCGGTTTTGTTTGTTTTCTTAACTACTCGCTTGCTGGCCTTTTT
CTTGCCTGCCTGCTTGCGTTCGTGGTTGACGGCCCGCCCACCTACCATTC
CCAAACAAGTATGAGGATGAAATCGGCGCCTCGAAATATATTTTTGAAAC
AAAATCCACCACCCCTCCACATAGACACACGAATAAAGTAAAACTTCGAA
AAAAGAAAAACTTGGGGAATTTTTTTGTTTTTTGTTTTTTGTTTTTTTAT
TTTTCCCCGCGCTTTTTTGGCGACAAACTTCTTGGAATTAGTGTGGGATA
AGTTTTGCGGTAGCACTGAGGGTTAAAAAACCGAAAAAAGTTCGAGCAAA
GCTTTCGCATGCATACCTCAGACAGATTACCTATGGATCATTCCTACCTG
ATGATCTAGGTATTTCAGGGCAGATAGATAAATAATGATCTGTATGACCT
GTGATGATCTGTATGATCTAGCTCATGGTGCCGGGTCGGAGTCGTATGAT
GTGCATGATCTATCACAGCATGTGTTTCCTTTGCTGGATCTGTACTTTAC
ACAGATAGATGCTGCACAATATCTCATAACGAGAGGTGGGAGACTATTGA
TAGATGGTCTACATTAGGTGTGGGAAAGCTTCGCCCCCGTTTTTCTTCGT
AGTTGTTCGTTGTATATCGTCTTGTTTCATTTTTATACTTTTTTGGTTCC
TTTTTTTTGTTTGCTCCCGTTATTTTGCGTCCGGCAGCACGCGATCGACC
ACGGCTTCGGGCCGCCGCACGCGGTAAGAATGGAGGGCGGACCCCAGCGC
GTTGTGCTGTCGCTGGTGCATTCCGGAAAGGTCAGTGTTAAATCGCGCTC
CGCATCGATAACCCCAACCTTACATTTCACTCGTCGGACAGAAATGTATC
ATGATAAGTCTAGCTACAGAGAGATCATGATCTAGATCATCTAGGTCCTC
ACCTGCCTTTGTGGGAGCTTGCTTGTGCAGCTTCTGTATACGTATACACT
AGTGCAGATCCAACCCAGGAAAATAGGTCCCGGATCGTCCAGAATATACG
GCTCCCTCACCGGCAACATGAGCTAGATCATACAGATCATCACAGATCAT
ACATATATCTGCTCTGAGAGATCTACTACAGATCATGATCTATCTGTAGA
TGATTTATCTGACCTGTTCGATGTGTGTATCCTTTCCCAGGAGCTGCTGT
ACCTGTTTGTATCTGTGGTGCGCATATGGACCTACCTACTGTATGTGAGG
TTGGCCTCTGTTGTACCCGCTGCCGCTGCTGCTGTTGGGCTATAGATGTA
CTGCGCCGGTACTTGTTAACGTCCGGAGGGAGTGTGGGTTGGAGTCGTCC
CGATGTTGTCAGGATGGTACAGACGAGCGCACAGACACGCGCACACCCAG
AAGCACTGCCCGTGACTTTCACAAAGAAAACTACCGTGAAGTGCGGCTAC
TGCTGCTGCTGCTGCTGTATCACCTGGGTGCCGCAACGTCCGTGTAGATA
GCGTGAAGGACGGGGTGATACAGATGACCCCGGTACGCAGCAACAGCAGC
AGTAGTAGGCAGCACGGCTTGAAACAGACACACATGGAAATTGCTTTGTG
CTCCTACTGTACTTCGTATGCTGCTTGCTGTAGGATCGGTGGGTGGCACA
CACACTGACACCCTCACTCACAGACAGAAGCACCCTTGATGTCCTTGTCC
CATAGGGACAAGCGTCAAACGCGGCTGCTGTTGTATCGTGGCTTCGTCGC
TGTTCTAAAGCGTTCGAGGACTGGTGTGGTACTTTTCGCAGATACTGATT
GATACACAGCAGCAGAGCGCAAAACTTCTTCCTTTTTTTTTTTCATCAAC
ACTCTGGGGGTGTCGATGAGCCTGGTTTGCTCTGGCTCGGCGGAAAGCAA
TACCGTGATTATTTCCCAGTTCCGCGCGACTAACTGGTGAGCGCACTGAA
GCACGCGCCACGCAGCCCGGCCGGGGCCACAAGCAATCACCGTAGTGCAC
ACGCGAGCCCCCTGCATGCCCCGCCGCCGACAGCGCGAAGAAATGTCCGC
AGTCGGAAGAGAAACGGTCTCCGATGTGCCAAACAAGGACAATCCTGTAC
GTGCTTGGTATACCTATAATGTTGTACGACTTGAACCAGTTTTTGTTTGA
TTTCTCGCTTGATTTTCGCTCAATTTTGGTTCGATTTCTTCTTTTTTGTT
TTTGTTTTTGTTTTTTTGATATTTTTGTTTTAATTTTTGTGTGATTCTCG
TTCGACCTCAGTTTGATTTTCGTTTTGATTTTTGTGTTGTTTTTTTCGTT
TGTTCTGTTTGCGCAGGGGGGGCACCAGCCGGCTGAAAAAAGCGAGGGCG
CGGACGACGCCAGTCAGGGCTGGCGAGAACTGGTCGACGTCATGTTGGCA
TCCGGTTTCGGTTCCGAGAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10043:130..3753+

>mRNA_M-pyrifera_M_contig10043.89.1 ID=mRNA_M-pyrifera_M_contig10043.89.1|Name=mRNA_M-pyrifera_M_contig10043.89.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig10043:130..3753+ (Macrocystis pyrifera P11B4 male)
ATGGCGAACGTTGGCAGCGCCGGGGAGGGCAAGATGGATGAGTCCAAGAC
GGAGATGGCGGAAGGGGATAGCCGCCCGGCCCACGCGCGAGCCCTTCGGT
GGGGGGACACGGAGGCTGTGAAAGAGCTCATGGAGGTCTTGGAAACGGGC
CACTTCGACCTCGTGCTCGGCTCTGACCTCATATACCCAGAGCAGGCAAG
TAGCTCGGGGAGGAAAAACGATGGCGAACGTTGGCAGCGCCGGGGAGGGC
AAGATGGATGAGTCCAAGACGGAGATGGCGGAAGGGGATAGCCGCCCGGC
CCACGCGCGAGCCCTTCGGTGGGGGGACACGGAGGCTGTGAAAGAGCTCA
TGGAGGTCTTGGAAACGGGCCACTTCGACCTCGTGCTCGGCTCTGACCTC
ATATACCCAGAGCAGGCAAGTAGCTCGGGGAGGAAAAACGCGCTTCCGTT
GATGGACGTGAAAGTTCGAGACCTGATGGCAACCGCCGCGGCCGCGCTCC
GGGAGGGCGGTACCTTCCTCCTCGCGCACGAGATCCGATCCGACTTGAGG
GACGTCATGACGCTGTTGGAGACGCGCTTCCGTTGATGGACGTGAAAGTT
CGAGACCTGATGGCAACCGCCGCGGCCGCGCTCCGGGAGGGCGGTACCTT
CCTCCTCGCGCACGAGATCCGATCCGACTTGAGGGACGTCATGACGCTGT
TGGAGACGCACGCGATCGACCACGGCTTCGGGCCGCCGCACGCGGTAAGA
ATGGAGGGCGGACCCCAGCGCGTTGTGCTGTCGCTGGTGCATTCCGGAAA
GGTCAGTCACGCGATCGACCACGGCTTCGGGCCGCCGCACGCGGTAAGAA
TGGAGGGCGGACCCCAGCGCGTTGTGCTGTCGCTGGTGCATTCCGGAAAG
GTCAGTGGGGGGCACCAGCCGGCTGAAAAAAGCGAGGGCGCGGACGACGC
CAGTCAGGGCTGGCGAGAACTGGTCGACGTCATGTTGGCATCCGGTTTCG
GTTCCGAGAGGTAAGGGGGGCACCAGCCGGCTGAAAAAAGCGAGGGCGCG
GACGACGCCAGTCAGGGCTGGCGAGAACTGGTCGACGTCATGTTGGCATC
CGGTTTCGGTTCCGAGAGGTAA
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