mRNA_M-pyrifera_M_contig100396.83.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A7S4IC56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IC56_9EUKA) HSP 1 Score: 152 bits (384), Expect = 1.970e-42 Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 1 Query: 1 RCQVELVLDVACKNE---DKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTN-----DTGDLVSIKIRDDVFHFTVE 498 +C ++L ++AC D VT+ D HSSDP VVPVE N I IVK+RKGQEL L A KG HAKW PTCCSVF+ EP I L++ ++ L KQ +V+SCPT VY DE +G V V+ P CTYCDECI + R + DLV+I+ ++++FHFTVE Sbjct: 107 KCAIKL--ELACTGTHMGDTTTVTAADFHSSDPDVVPVESYKN----IPIVKMRKGQELTLICIAKKGTAQTHAKWSPTCCSVFRVEPDIELNQAKLQMLDSIGKQEWVNSCPTRVYGYDEVSGNVSVENPDRCTYCDECIKDGRMRIGYGEGGEYDDLVTIRPQENIFHFTVE 274
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A5J4W8L2_9EUKA (DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W8L2_9EUKA) HSP 1 Score: 137 bits (346), Expect = 6.660e-37 Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1 Query: 1 RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLV 456 +C V L LD A N+D +V S+DLHS +P+VVPV D+ PD GI+I K+ KGQELRL A A KGIG +HAKW P +VF EP + L++ +SEL +E K FV SCP +V+++D +G V VD C +C+EC+ + K+ +V Sbjct: 102 QCSVILTLD-ASTNDDTCLVYSKDLHSENPEVVPVRDQEFPD-GILITKITKGQELRLKAIAKKGIGKEHAKWIPASTAVFSYEPEVKLNDAILSELDQEQKIAFVKSCPKSVFRIDRVSGAVRVDDFWQCMFCEECVKHSDKIKKSVNGIV 251
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A2P6N9R0_9EUKA (RNA polymerase II core subunit n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9R0_9EUKA) HSP 1 Score: 135 bits (341), Expect = 3.220e-36 Identity = 78/167 (46.71%), Postives = 100/167 (59.88%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTG--DLVSIKIRDDVFHFTVE 498 C V L V C ++ K V TS DL S+D V PV D+ IVIVKL KGQEL+LTA A KG+G +HAKWQPTC + FQ +P I +++ + L EE K F +SCP V+ D+ T TV V+ NC YC EC F +ND G DLV + + + + FTVE Sbjct: 95 CSVRFNLHVTCTDDTKQV-TSDDLFSTDADVRPVH---REDDSIVIVKLAKGQELKLTAIAKKGVGKEHAKWQPTCITTFQYDPDIRINQNIMDRLDEEKKVKFANSCPVKVFAYDKDTRTVSVEAASNCVYCQECKF----YSNDIGHPDLVHVGYKPERYIFTVE 253
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=RPB3_DICDI) HSP 1 Score: 135 bits (339), Expect = 8.850e-36 Identity = 75/171 (43.86%), Postives = 102/171 (59.65%), Query Frame = 1 Query: 1 RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDR---SNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGT--VFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 +C VEL L+V C VTS DL S + V+PV + SN + I IVKLR+GQE++L A A KG+G +HAKW P+C + +Q +P IVL++ RI EL ++ K+ +V SCPT VY T V ++ PL C YC EC +A DLV ++ + D F FTVE Sbjct: 100 QCSVELRLNVKCTENRPRDVTSSDLLSQNSAVIPVSSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGKP--DLVHLEQKQDKFIFTVE 268
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A176WQD0_MARPO (RPOLD domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WQD0_MARPO) HSP 1 Score: 133 bits (334), Expect = 7.930e-35 Identity = 82/174 (47.13%), Postives = 102/174 (58.62%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPD---------NGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 C VE L+V C ++ L VTS DL SSDP VVPV++ D GI+IVKLR+GQEL+L A A KGIG HAKW P FQ EP I ++E + L E+K+ +VDSCPT V+++D +T V V TY DE I + + TG LV I RDD F FTVE Sbjct: 103 CSVEFTLNVKCTSDQTLDVTSHDLISSDPSVVPVDNNLAQDINGFDAPEARGILIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVAFQFEPEIHINEALMESLSLEEKKEWVDSCPTKVFEVDPQTQQVVVVDAEAYTY-DEEILKKAEAMGKTG-LVDIISRDDSFIFTVE 274
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: UPI00053C299F (DNA-directed RNA polymerases II, IV and V subunit 3 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C299F) HSP 1 Score: 129 bits (324), Expect = 2.110e-33 Identity = 77/171 (45.03%), Postives = 99/171 (57.89%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVED------RSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 C VE L C + L VTSRDL+S+DP V PV+ SN GI+IVKLR+GQELRL A A KGIG HAKW P F EP IV++E + L +E+K +DS PT V+ D+ T + V P +Y DE + +A + TG LV I+ ++D F FTVE Sbjct: 102 CSVEFRLSAKCIGDQTLDVTSRDLYSADPTVTPVDFSDPSGYESNEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMCEPEIVINEDLMDTLSDEEKLKLIDSSPTKVFDFDQVTRQIVVVDPEAYSY-DEEVLKAAEAMGKTG-LVEIRPKEDSFIFTVE 270
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A067F124_CITSI (RPOLD domain-containing protein n=7 Tax=rosids TaxID=71275 RepID=A0A067F124_CITSI) HSP 1 Score: 128 bits (322), Expect = 4.270e-33 Identity = 77/172 (44.77%), Postives = 99/172 (57.56%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVE-------DRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 C VE L C ++ L VTS+DL+SSD VVPV+ D ++ GI+IVKLR+GQELRL A A KGIG HAKW P F EP I ++E + L E+KQ +V+S PT V+ +D TG V+V TY DE I +A + LV I ++D F FTVE Sbjct: 102 CSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKP--GLVEIYAKEDSFIFTVE 271
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: F0ZT58_DICPU (RNA polymerase II core subunit n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZT58_DICPU) HSP 1 Score: 128 bits (321), Expect = 4.270e-33 Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = 1 Query: 1 RCQVELVLDVACKNEDKLVVTSRDL---HSSDPQVVPVEDRSNP-DNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNV--YKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 +C VE L+V C N+ + VTS DL +++ V+PV ++ + I IVKLR+GQELRL A A KG+G +HAKW P+C + +Q +P + +++ R+ EL ++ K+ +V SCPT V Y ++ V VD+P+ C YC EC +A DL+SI+ + D F FTVE Sbjct: 100 QCSVEFKLNVKCSNQRPIDVTSSDLIVVSNNNNSVIPVSSQTTERTDEIPIVKLRQGQELRLRAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSDKQKEEWVGSCPTKVFGYSPHNQSQPVSVDEPMRCMYCLECKKKAEAFGKP--DLISIEQKQDKFIFTVE 269
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A161WY68_DAUCS (RPOLD domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161WY68_DAUCS) HSP 1 Score: 128 bits (322), Expect = 4.450e-33 Identity = 79/169 (46.75%), Postives = 95/169 (56.21%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPV----EDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 C VEL L V C E L VTS DL SD VVPV S P GIVIVKL +GQEL+L A A KGIG HAKW P F EP I ++E + L E+KQ FVDS PT V+++D++T V + P Y DE I +A + LV I ++D F FTVE Sbjct: 102 CSVELHLSVKCVGEQHLEVTSDDLIPSDHNVVPVGYSGPGDSEPKRGIVIVKLNRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIYINENMMDSLTLEEKQGFVDSSPTKVFEIDDKTQQVKIVDPEAYAYDDEVIKKAEAMGKP--GLVEIYAKEDSFIFTVE 268
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A6P6WAQ4_COFAR (DNA-directed RNA polymerases II, IV and V subunit 3-like n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6WAQ4_COFAR) HSP 1 Score: 128 bits (321), Expect = 6.000e-33 Identity = 81/172 (47.09%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 4 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRS------NPDN-GIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 498 C VE L C N+ L VTSR+L SSDP VVPV+ S N +N GI+IVKLR+GQELRL A A KGIG HAKW P F EP I ++E + +L E + V+S PT V+ +D +TG V V P TY DE I + L N G LV + ++D F FTVE Sbjct: 102 CSVEFHLRAKCLNDQTLDVTSRELISSDPSVVPVDFASPSSEYDNAENRGIMIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIYINEDMMEKLTLEQRMSVVESSPTKVFDIDAKTGRVVVVDPEAYTYDDEVIKKCESL-NAPG-LVEVHPKEDSFIFTVE 271 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100396.83.1 >prot_M-pyrifera_M_contig100396.83.1 ID=prot_M-pyrifera_M_contig100396.83.1|Name=mRNA_M-pyrifera_M_contig100396.83.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLback to top mRNA from alignment at M-pyrifera_M_contig100396:74..571- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100396.83.1 ID=mRNA_M-pyrifera_M_contig100396.83.1|Name=mRNA_M-pyrifera_M_contig100396.83.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig100396:74..571- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100396:74..571- >mRNA_M-pyrifera_M_contig100396.83.1 ID=mRNA_M-pyrifera_M_contig100396.83.1|Name=mRNA_M-pyrifera_M_contig100396.83.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig100396:74..571- (Macrocystis pyrifera P11B4 male)back to top |