mRNA_M-pyrifera_M_contig100286.65.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100286.65.1
Unique NamemRNA_M-pyrifera_M_contig100286.65.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A182PIY9_9DIPT (Aminoacyl-tRNA hydrolase n=1 Tax=Anopheles epiroticus TaxID=199890 RepID=A0A182PIY9_9DIPT)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-18
Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   13 IAIGVLGTQMTWGPHRGRQPAARASDGKASAGRNPAEEEDSESD-------DEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            + +G+  T +++        A+R+ +G+      P+E E+S S+       D G E KMVL+VR DLKMGKGKIAAQC HAAVGAF+ G+R     VR+W     AKIALK   E  L
Sbjct:    6 VIVGISATIVSFAVGYAVARASRSKNGRP----EPSETENSNSEGSDKIFADMGGEYKMVLVVRNDLKMGKGKIAAQCGHAAVGAFESGLRNTPTAVRKWQNSGQAKIALKVDSEVAL 119          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A7K4RGX4_9TYRA (Aminoacyl-tRNA hydrolase (Fragment) n=13 Tax=Passeriformes TaxID=9126 RepID=A0A7K4RGX4_9TYRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.070e-18
Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    7 LGIAIGVL-GTQMTWGPHRGRQPAARASDGKASAGRNPAEEEDSESDDEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            LG+  GV  G  + WG  RGR    R + G ASA  N   E D  S  E  E KMVL+VR DLKMGKGK+AAQC HAAV A+++  R + + +++W      KI LKAPDE TL
Sbjct:   15 LGVVAGVACGLCLGWG-FRGRLLRKRRA-GTASAANNLEGEADVMS--ESGEFKMVLIVRNDLKMGKGKVAAQCSHAAVSAYKQAERRNPELLKQWEYCGQPKIVLKAPDEETL 124          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A7L4NLY0_9AVES (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Ceyx cyanopectus TaxID=390723 RepID=A0A7L4NLY0_9AVES)

HSP 1 Score: 84.3 bits (207), Expect = 4.250e-18
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 LLLGIAIGVLGTQMTWGPHRGR---QPAARASDGKASAGRNPAEEEDSESDDEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            ++ G+A GV    + WG  RGR   QP ARA     + G NP  + D     E  E KMVL+VR DLKMGKGK+AAQC HAAV A+++  + + D +R+W      K+ LKAPDE TL
Sbjct:   19 VMAGVACGVC---LGWGI-RGRLLRQPKARA----PAPGNNPKGKADIMG--ESGEFKMVLIVRNDLKMGKGKVAAQCSHAAVSAYKQVQKRNPDLLRQWEYCGQPKVVLKAPDEETL 126          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A6J3E3Z8_AYTFU (Aminoacyl-tRNA hydrolase n=12 Tax=Anatidae TaxID=8830 RepID=A0A6J3E3Z8_AYTFU)

HSP 1 Score: 84.0 bits (206), Expect = 5.480e-18
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    4 LLGIAIGVL-GTQMTWGPHRGR---QPAARASDGKASAGRNPAEEEDSESDDEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            LLG+  GV  G  + WG  RGR   QP ARA+   A  G   A  E +   ++GE  K+VL+VR DLKMGKGK+AAQCCHAAV A+++  R   + +++W      K+ L+APDE TL
Sbjct:    9 LLGLVAGVACGLCLGWGL-RGRLLRQPRARAAAAAAPLG--GAGPEATVPGEDGE-FKLVLVVRNDLKMGKGKVAAQCCHAAVAAYKQAQRRTPEVLQQWEYSGQPKVVLRAPDEETL 122          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A7K6QSI5_9PASS (Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K6QSI5_9PASS)

HSP 1 Score: 84.0 bits (206), Expect = 6.000e-18
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    7 LGIAIGVL-GTQMTWGPHRGR---QPAARASDGKASAGRNPAEEEDSESDDEGE--ELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            L I +GVL GT + WG  RGR   +P A         G  P+    SE+D  GE  ELK+VL+VR DLKMGKGK+AAQC HAAV A+++  R + + ++ W      K+ LKAPDE TL
Sbjct:   17 LNILLGVLCGTCLGWGI-RGRFLRKPGA--------GGAEPSNSLGSEADVMGESGELKLVLIVRNDLKMGKGKVAAQCSHAAVSAYKQVQRRNPELLKEWEYCGQPKVVLKAPDEETL 126          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A7K4LSA4_9AVES (Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Crypturellus TaxID=48395 RepID=A0A7K4LSA4_9AVES)

HSP 1 Score: 82.8 bits (203), Expect = 1.680e-17
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 LLLGIAIGVLGTQMTWGPHRGRQPAARASDGKASAGRNPAEEEDSESDDEGE--ELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            ++ G+A GV    + WG  RGR    R   G+ +AG   A E  SE+   GE  E KMVL+VR DLKMGKGK+AAQC HAAV A+++  R H + +++W      K+ LKAPDE  L
Sbjct:   19 VIAGVACGVC---LGWGL-RGR--LLRQPKGRTAAG---ASEPGSEATVMGESGEFKMVLIVRNDLKMGKGKVAAQCSHAAVSAYKQAQRRHPELLKQWEYCGQPKVVLKAPDEEAL 126          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A672URA1_STRHB (Aminoacyl-tRNA hydrolase n=9 Tax=Psittaciformes TaxID=9223 RepID=A0A672URA1_STRHB)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-17
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 LLLGIAIGVLGTQMTWGPHRGR---QPAARASDGKASAGRNPAEEEDSESDDEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            ++ G+A GV    + WG  RGR   QP   AS   +S G        SE+  E  E KMVL+VR DLKMGKGK+AAQC HAAV A+++  R + + +++W      K+ LKAPDE TL
Sbjct:   12 VIAGVACGVC---LGWGI-RGRFLRQPLVGASAPASSLG--------SEAMGEAGEFKMVLIVRNDLKMGKGKVAAQCSHAAVSAYKQAQRRNPELLKQWEYCGQPKVVLKAPDEETL 117          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A7K9HKY4_9AVES (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Bucco capensis TaxID=135168 RepID=A0A7K9HKY4_9AVES)

HSP 1 Score: 82.0 bits (201), Expect = 3.810e-17
Identity = 53/116 (45.69%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    7 LGIAIGVL-GTQMTWGPHRGRQPAARASDGKASAGRNPAEEEDSESD--DEGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            LGI  GV  G  + WG        +RA     + G   A    SE+D   EG E KMVL+VR DLKMGKGK AAQC HAAV A+++  R + D V++W      K+ L+APDE TL
Sbjct:   17 LGIMAGVACGACLGWGIRGRLLRCSRAGMAAPTNGLGSANGLGSEADVIAEGGEFKMVLVVRNDLKMGKGKAAAQCSHAAVSAYKQAQRKNPDLVKQWEYCGQPKVVLRAPDEETL 132          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: A0A851F4J9_PITSO (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Pitta sordida TaxID=9163 RepID=A0A851F4J9_PITSO)

HSP 1 Score: 81.6 bits (200), Expect = 4.720e-17
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  148 EGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            E  + KMVL+VRTDLKMGKGK+AAQCCHAAV A+++  R + + + +W      K+ LKAPDE TL
Sbjct:   61 ESGDFKMVLVVRTDLKMGKGKVAAQCCHAAVSAYKQAQRRNPELLEQWEYCGQPKVVLKAPDEETL 126          
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Match: S4S164_PETMA (Aminoacyl-tRNA hydrolase n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4S164_PETMA)

HSP 1 Score: 81.6 bits (200), Expect = 4.930e-17
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  148 EGEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARGASAKIALKAPDEATL 345
            EG E K+VL+VR+DLKMGKGK+AAQC HAAV AF++    H D +R W  G  AK+  + PDEA L
Sbjct:   63 EGGEWKLVLVVRSDLKMGKGKVAAQCAHAAVSAFRQAGARHADALRHWELGGQAKVVTRVPDEAGL 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100286.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182PIY9_9DIPT2.570e-1844.07Aminoacyl-tRNA hydrolase n=1 Tax=Anopheles epiroti... [more]
A0A7K4RGX4_9TYRA4.070e-1849.12Aminoacyl-tRNA hydrolase (Fragment) n=13 Tax=Passe... [more]
A0A7L4NLY0_9AVES4.250e-1846.61Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Ceyx c... [more]
A0A6J3E3Z8_AYTFU5.480e-1846.61Aminoacyl-tRNA hydrolase n=12 Tax=Anatidae TaxID=8... [more]
A0A7K6QSI5_9PASS6.000e-1847.06Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Passer... [more]
A0A7K4LSA4_9AVES1.680e-1746.15Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Cryptu... [more]
A0A672URA1_STRHB1.940e-1744.92Aminoacyl-tRNA hydrolase n=9 Tax=Psittaciformes Ta... [more]
A0A7K9HKY4_9AVES3.810e-1745.69Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Bucco ... [more]
A0A851F4J9_PITSO4.720e-1756.06Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Pitta ... [more]
S4S164_PETMA4.930e-1757.58Aminoacyl-tRNA hydrolase n=2 Tax=Petromyzon marinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100286contigM-pyrifera_M_contig100286:322..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.1
Seed ortholog evalue7.4e-13
Seed eggNOG ortholog8081.XP_008426402.1
Preferred namePTRH2
KEGG koko:K04794
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0008150,GO:0009892,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016787,GO:0016788,GO:0019222,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0052689,GO:0060255,GO:0060548,GO:0065007,GO:0140098,GO:0140101,GO:2000209,GO:2000210,GO:2000811
EggNOG free text desc.peptidyl-tRNA hydrolase 2
EggNOG OGs3A5QT@33154,3BIPK@33208,3D6I7@33213,480R5@7711,495TP@7742,4A34X@7898,COG1990@1,KOG3282@2759
EC3.1.1.29
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.2482255-CDS-M-pyrifera_M_contig100286:321..6661622815498.2482255-CDS-M-pyrifera_M_contig100286:321..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100286 322..666 +
1692277438.9427207-CDS-M-pyrifera_M_contig100286:321..6661692277438.9427207-CDS-M-pyrifera_M_contig100286:321..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100286 322..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100286.65.1prot_M-pyrifera_M_contig100286.65.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100286 322..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100286.65.1

>prot_M-pyrifera_M_contig100286.65.1 ID=prot_M-pyrifera_M_contig100286.65.1|Name=mRNA_M-pyrifera_M_contig100286.65.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
LLLGIAIGVLGTQMTWGPHRGRQPAARASDGKASAGRNPAEEEDSESDDE
GEELKMVLLVRTDLKMGKGKIAAQCCHAAVGAFQEGMRTHRDWVRRWARG
ASAKIALKAPDEATL
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mRNA from alignment at M-pyrifera_M_contig100286:322..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100286.65.1 ID=mRNA_M-pyrifera_M_contig100286.65.1|Name=mRNA_M-pyrifera_M_contig100286.65.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig100286:322..666+ (Macrocystis pyrifera P11B4 male)
CTGCTGCTGGGGATTGCGATTGGAGTGTTGGGGACGCAGATGACGTGGGG ACCGCATCGGGGACGCCAGCCTGCAGCGCGAGCAAGCGATGGAAAGGCAA GCGCGGGGCGCAACCCGGCGGAGGAGGAGGATAGCGAGAGCGATGATGAG GGGGAGGAGCTGAAGATGGTGCTTCTGGTGCGCACAGATCTGAAGATGGG CAAGGGCAAGATTGCAGCGCAGTGCTGCCACGCCGCAGTGGGTGCATTCC AGGAAGGGATGCGCACGCACCGCGACTGGGTTCGCCGCTGGGCTCGCGGT GCCTCTGCCAAGATCGCCCTCAAAGCGCCAGACGAGGCCACGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100286:322..666+

>mRNA_M-pyrifera_M_contig100286.65.1 ID=mRNA_M-pyrifera_M_contig100286.65.1|Name=mRNA_M-pyrifera_M_contig100286.65.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig100286:322..666+ (Macrocystis pyrifera P11B4 male)
CTGCTGCTGGGGATTGCGATTGGAGTGTTGGGGACGCAGATGACGTGGGG
ACCGCATCGGGGACGCCAGCCTGCAGCGCGAGCAAGCGATGGAAAGGCAA
GCGCGGGGCGCAACCCGGCGGAGGAGGAGGATAGCGAGAGCGATGATGAG
GGGGAGGAGCTGAAGATGGTGCTTCTGGTGCGCACAGATCTGAAGATGGG
CAAGGGCAAGATTGCAGCGCAGTGCTGCCACGCCGCAGTGGGTGCATTCC
AGGAAGGGATGCGCACGCACCGCGACTGGGTTCGCCGCTGGGCTCGCGGT
GCCTCTGCCAAGATCGCCCTCAAAGCGCCAGACGAGGCCACGCTTCTGCT
GCTGGGGATTGCGATTGGAGTGTTGGGGACGCAGATGACGTGGGGACCGC
ATCGGGGACGCCAGCCTGCAGCGCGAGCAAGCGATGGAAAGGCAAGCGCG
GGGCGCAACCCGGCGGAGGAGGAGGATAGCGAGAGCGATGATGAGGGGGA
GGAGCTGAAGATGGTGCTTCTGGTGCGCACAGATCTGAAGATGGGCAAGG
GCAAGATTGCAGCGCAGTGCTGCCACGCCGCAGTGGGTGCATTCCAGGAA
GGGATGCGCACGCACCGCGACTGGGTTCGCCGCTGGGCTCGCGGTGCCTC
TGCCAAGATCGCCCTCAAAGCGCCAGACGAGGCCACGCTT
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