mRNA_M-pyrifera_M_contig100236.58.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100236.58.1
Unique NamemRNA_M-pyrifera_M_contig100236.58.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100236.58.1 vs. uniprot
Match: A0A350UZ90_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A350UZ90_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 5.700e-5
Identity = 26/92 (28.26%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:    1 VHVFWSAPEQVQGFEVFHARSTDGGTTFGPAVAVPGARFDQLYDVDVQGAVLAMAWAVIDPQTQTIQVERTSSSDGGQTWAPVTKLPQATGV 276
            VH+ W+     Q +++++ RSTDGG ++ P VA+          +   G+V+ + WA  D  + T ++   +S+ GG +W   T+L  A  +
Sbjct:  108 VHIIWTQSPSSQHYDIYYRRSTDGGGSWLPPVAIYTGGKSLYQSITASGSVVIVTWAE-DLPSNTSEIYVRNSTTGGNSWGSATRLTNANSI 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100236.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A350UZ90_9BACT5.700e-528.26Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100236contigM-pyrifera_M_contig100236:2..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.8616712-CDS-M-pyrifera_M_contig100236:1..5801622815497.8616712-CDS-M-pyrifera_M_contig100236:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100236 2..580 +
1692277438.7051-CDS-M-pyrifera_M_contig100236:1..5801692277438.7051-CDS-M-pyrifera_M_contig100236:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100236 2..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100236.58.1prot_M-pyrifera_M_contig100236.58.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100236 2..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100236.58.1

>prot_M-pyrifera_M_contig100236.58.1 ID=prot_M-pyrifera_M_contig100236.58.1|Name=mRNA_M-pyrifera_M_contig100236.58.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
VHVFWSAPEQVQGFEVFHARSTDGGTTFGPAVAVPGARFDQLYDVDVQGA
VLAMAWAVIDPQTQTIQVERTSSSDGGQTWAPVTKLPQATGVAFDTALSP
EVEIRPQTAEITLAALALQNGAQKVVAQHSPDAGVTWQPTQLIELGSAVD
LDLEFAGNGRLRGVLTWQTAPGADLRTALTLDGGQSFGPAQAV
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mRNA from alignment at M-pyrifera_M_contig100236:2..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100236.58.1 ID=mRNA_M-pyrifera_M_contig100236.58.1|Name=mRNA_M-pyrifera_M_contig100236.58.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig100236:2..580+ (Macrocystis pyrifera P11B4 male)
GTGCACGTCTTCTGGTCGGCGCCGGAACAGGTCCAAGGCTTCGAGGTGTT
CCACGCGCGAAGCACCGATGGCGGCACGACGTTTGGGCCGGCGGTGGCGG
TGCCGGGCGCCCGCTTCGACCAGCTCTACGATGTCGACGTCCAAGGCGCC
GTGCTGGCCATGGCCTGGGCGGTGATCGATCCGCAGACCCAGACGATCCA
GGTCGAGCGCACGAGCTCGTCCGATGGCGGCCAGACATGGGCGCCTGTCA
CCAAGCTGCCCCAAGCGACGGGCGTCGCCTTCGACACGGCGCTGTCGCCC
GAGGTGGAGATCCGCCCGCAGACAGCAGAGATCACGCTGGCGGCACTCGC
TCTGCAGAACGGCGCTCAAAAGGTGGTGGCCCAACACTCGCCGGACGCCG
GCGTGACCTGGCAGCCGACGCAACTGATCGAGTTGGGAAGCGCGGTGGAC
CTCGACCTCGAATTCGCAGGTAATGGGCGTCTGCGCGGCGTGCTCACCTG
GCAGACGGCGCCGGGCGCTGACCTGCGCACGGCCCTGACCTTGGACGGTG
GCCAGAGCTTCGGTCCGGCCCAGGCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100236:2..580+

>mRNA_M-pyrifera_M_contig100236.58.1 ID=mRNA_M-pyrifera_M_contig100236.58.1|Name=mRNA_M-pyrifera_M_contig100236.58.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig100236:2..580+ (Macrocystis pyrifera P11B4 male)
GTGCACGTCTTCTGGTCGGCGCCGGAACAGGTCCAAGGCTTCGAGGTGTT
CCACGCGCGAAGCACCGATGGCGGCACGACGTTTGGGCCGGCGGTGGCGG
TGCCGGGCGCCCGCTTCGACCAGCTCTACGATGTCGACGTCCAAGGCGCC
GTGCTGGCCATGGCCTGGGCGGTGATCGATCCGCAGACCCAGACGATCCA
GGTCGAGCGCACGAGCTCGTCCGATGGCGGCCAGACATGGGCGCCTGTCA
CCAAGCTGCCCCAAGCGACGGGCGTCGCCTTCGACACGGCGCTGTCGCCC
GAGGTGGAGATCCGCCCGCAGACAGCAGAGATCACGCTGGCGGCACTCGC
TCTGCAGAACGGCGCTCAAAAGGTGGTGGCCCAACACTCGCCGGACGCCG
GCGTGACCTGGCAGCCGACGCAACTGATCGAGTTGGGAAGCGCGGTGGAC
CTCGACCTCGAATTCGCAGGTAATGGGCGTCTGCGCGGCGTGCTCACCTG
GCAGACGGCGCCGGGCGCTGACCTGCGCACGGCCCTGACCTTGGACGGTG
GCCAGAGCTTCGGTCCGGCCCAGGCCGTGGTGCACGTCTTCTGGTCGGCG
CCGGAACAGGTCCAAGGCTTCGAGGTGTTCCACGCGCGAAGCACCGATGG
CGGCACGACGTTTGGGCCGGCGGTGGCGGTGCCGGGCGCCCGCTTCGACC
AGCTCTACGATGTCGACGTCCAAGGCGCCGTGCTGGCCATGGCCTGGGCG
GTGATCGATCCGCAGACCCAGACGATCCAGGTCGAGCGCACGAGCTCGTC
CGATGGCGGCCAGACATGGGCGCCTGTCACCAAGCTGCCCCAAGCGACGG
GCGTCGCCTTCGACACGGCGCTGTCGCCCGAGGTGGAGATCCGCCCGCAG
ACAGCAGAGATCACGCTGGCGGCACTCGCTCTGCAGAACGGCGCTCAAAA
GGTGGTGGCCCAACACTCGCCGGACGCCGGCGTGACCTGGCAGCCGACGC
AACTGATCGAGTTGGGAAGCGCGGTGGACCTCGACCTCGAATTCGCAGGT
AATGGGCGTCTGCGCGGCGTGCTCACCTGGCAGACGGCGCCGGGCGCTGA
CCTGCGCACGGCCCTGACCTTGGACGGTGGCCAGAGCTTCGGTCCGGCCC
AGGCCGTG
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