mRNA_M-pyrifera_M_contig100225.54.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A5C6B0Y5_9BACT (RNA polymerase sigma factor SigD n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6B0Y5_9BACT) HSP 1 Score: 314 bits (805), Expect = 2.480e-107 Identity = 155/186 (83.33%), Postives = 173/186 (93.01%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTDTTE 558 NDPASEEAW EFAAVYRPLVIRVARAKGLQHADADDLAQ+V +AVG AIGSFT+TG+GSFRRWLY+ITRNLVVNQLTRGPFSG+RGPIGSG+SDVQK L+Q P DQTATLFQLEY+R RFQQAA KV++QFS++TWQCFWLTSVENQ AE+VA+++GKT GAVRVARCRVLAKIR+ETQTDT E Sbjct: 15 NDPASEEAWYEFAAVYRPLVIRVARAKGLQHADADDLAQDVLAAVGNAIGSFTTTGEGSFRRWLYQITRNLVVNQLTRGPFSGQRGPIGSGNSDVQKFLSQAPAPGDQTATLFQLEYQRTRFQQAATKVKDQFSESTWQCFWLTSVENQSAEQVASSIGKTAGAVRVARCRVLAKIREETQTDTNE 200
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A518GD63_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518GD63_9BACT) HSP 1 Score: 301 bits (771), Expect = 3.750e-102 Identity = 149/186 (80.11%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTDTTE 558 NDPASEEAW EFAAVYRPLVIRVARAKGLQ+ADADD+AQ+V SAVGK++ SFTS+G+GSFRRWLY+ITRNLVVNQL RGPFSGRRGPIGSGDSDVQ LL+Q P +DQTATLF++EYRRARFQQAA+KV+NQFS+ TWQCFW TSVENQ E VA+++GKT GAVRVARCRVLAKIR+E Q D E Sbjct: 15 NDPASEEAWTEFAAVYRPLVIRVARAKGLQNADADDVAQDVLSAVGKSLESFTSSGEGSFRRWLYQITRNLVVNQLMRGPFSGRRGPIGSGDSDVQYLLSQAPTPEDQTATLFRIEYRRARFQQAAEKVKNQFSELTWQCFWQTSVENQSVEHVASSIGKTVGAVRVARCRVLAKIREEIQNDIDE 200
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A5C6ASX2_9BACT (RNA polymerase sigma factor RpoE n=2 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6ASX2_9BACT) HSP 1 Score: 236 bits (601), Expect = 7.760e-76 Identity = 117/182 (64.29%), Postives = 138/182 (75.82%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQT 546 NDP++ +AW EF +YRPLV RVAR KGLQHADA+DLAQ V + V AI SF DGSFR WL+ ITRNLVVN LTRGP S + GPIGSGDS VQ++L Q P + TATLFQLEYRR RFQQAA K+++QF++ TWQ FW TSV+ Q VA L +TPGA+R+ARCRVLA+IR E QT Sbjct: 45 NDPSASDAWAEFDGLYRPLVYRVARGKGLQHADAEDLAQQVLAVVNGAIDSFDPDADGSFRGWLFTITRNLVVNHLTRGPHSRKHGPIGSGDSKVQQMLMQHPSDESHTATLFQLEYRRGRFQQAARKLKSQFNEETWQAFWRTSVDGQSISDVAEQLARTPGAIRMARCRVLARIRGEVQT 226
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A5C6DRX9_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DRX9_9BACT) HSP 1 Score: 231 bits (589), Expect = 1.810e-74 Identity = 114/178 (64.04%), Postives = 142/178 (79.78%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQ 534 +DPAS+EAW EFA +YRP+++RVA+A+GLQHADADDLAQ+V SAVG+ +GSF STG GSFRRWL +ITRNLVVN LTR +GPIGSGDSDVQ++L Q P + +TATLFQLE RR FQQAA+K++ +FS++TW FWLTSVE + A L K+ G++RVARCRVLA+ RQ Sbjct: 16 SDPASQEAWTEFATIYRPIIVRVAQARGLQHADADDLAQDVLSAVGRRVGSFQSTGTGSFRRWLCQITRNLVVNHLTRS-----KGPIGSGDSDVQQMLLQQPSPEGETATLFQLEVRRFEFQQAAEKLQAEFSESTWMAFWLTSVEQLSIDEAANRLSKSAGSIRVARCRVLARFRQ 188
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A5M6CT70_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6CT70_9BACT) HSP 1 Score: 231 bits (589), Expect = 2.000e-74 Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTD 549 +P ++EAW +F A+YRPLVIRVA+AKGLQHADA+DLAQ V V + I SF GDGSFR WL+R+TRNLVVN+LTR GP GSGDS VQK L+Q P DD TATLF LEYRRARF+QAA V++QF+ TWQ FWLT++E QP + VA LGKTPGAVRVARCRV+AK+R E D Sbjct: 16 KNPHADEAWTDFDALYRPLVIRVAQAKGLQHADAEDLAQEVLMTVRRTIESFEHRGDGSFRSWLFRVTRNLVVNRLTR-----TSGPTGSGDSKVQKALSQQPADDDPTATLFLLEYRRARFKQAAANVKSQFALTTWQAFWLTAIEEQPVDHVARKLGKTPGAVRVARCRVIAKLRDEVAID 193
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: UPI001E6312D4 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Stieleria varia TaxID=2528005 RepID=UPI001E6312D4) HSP 1 Score: 229 bits (584), Expect = 9.740e-74 Identity = 113/179 (63.13%), Postives = 141/179 (78.77%), Query Frame = 1 Query: 13 SEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTD 549 S++AW EF +YRPLV+RVA AKGLQHADADDLAQ+V + VGKAI SF DGSFR WL++ITRNL VNQLTRGPFSG RGPIGSGDSDV ++L Q P D+ T TLF+ E+RR RFQQAA+ ++ +F+++TW FWLT+V+ + + VA LG T G+VRVARCRVLAK++ Q+D Sbjct: 19 SDDAWAEFVELYRPLVVRVALAKGLQHADADDLAQDVLATVGKAINSFDPLADGSFRGWLFKITRNLCVNQLTRGPFSGNRGPIGSGDSDVHRMLLQQPA-DEATVTLFETEHRRLRFQQAAEMLQARFTESTWLSFWLTAVDGRSIQSVADELGMTEGSVRVARCRVLAKLKDTLQSD 196
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A5C6B744_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B744_9BACT) HSP 1 Score: 229 bits (584), Expect = 4.350e-72 Identity = 113/179 (63.13%), Postives = 141/179 (78.77%), Query Frame = 1 Query: 13 SEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTD 549 S++AW EF +YRPLV+RVA AKGLQHADADDLAQ+V + VGKAI SF DGSFR WL++ITRNL VNQLTRGPFSG RGPIGSGDSDV ++L Q P D+ T TLF+ E+RR RFQQAA+ ++ +F+++TW FWLT+V+ + + VA LG T G+VRVARCRVLAK++ Q+D Sbjct: 139 SDDAWAEFVELYRPLVVRVALAKGLQHADADDLAQDVLATVGKAINSFDPLADGSFRGWLFKITRNLCVNQLTRGPFSGNRGPIGSGDSDVHRMLLQQPA-DEATVTLFETEHRRLRFQQAAEMLQARFTESTWLSFWLTAVDGRSIQSVADELGMTEGSVRVARCRVLAKLKDTLQSD 316
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A518FZU6_9BACT (ECF RNA polymerase sigma factor SigE n=2 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518FZU6_9BACT) HSP 1 Score: 216 bits (549), Expect = 2.630e-68 Identity = 110/179 (61.45%), Postives = 137/179 (76.54%), Query Frame = 1 Query: 7 PASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQ 543 PAS+EAW EF +YRPLVIRVARAKGLQHADA+DLAQ+V + VG+A+ SF +GSFR WL++ITRNL +N LTRG RGPIGSGDSDVQ++L Q P D+ T TLF E+RR RF+QAA+ ++ F ++TW FW T+VE + E VA ALGKT G+VRVARCRVLAK+++ Q Sbjct: 30 PASQEAWTEFVELYRPLVIRVARAKGLQHADAEDLAQDVLATVGRAVDSFDPAAEGSFRGWLFKITRNLCINHLTRG-----RGPIGSGDSDVQRILLQLPA-DEATVTLFATEHRRMRFRQAAEALKPSFQESTWLSFWWTTVEGRSIESVAEALGKTNGSVRVARCRVLAKLKEALQ 202
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: Q7UEM7_RHOBA (Probable extracytoplasmic function alternative sigma factor n=9 Tax=Rhodopirellula TaxID=265488 RepID=Q7UEM7_RHOBA) HSP 1 Score: 214 bits (546), Expect = 6.600e-68 Identity = 108/186 (58.06%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQTDTTE 558 N+PASEE W EF ++YRPLV+RVA AKGLQHADA+DL Q+VF+AV +++ F S G GSFR WL+RITRNLVVN LTR +GPIGSGDS VQ+ L Q PE +++TATLF E RR +FQ AAD+V+ ATWQ FW+T+VE + VA +LGK+ G+VR+A+CRVLA+++QE Q +++ Sbjct: 16 NEPASEEVWTEFVSIYRPLVVRVALAKGLQHADAEDLTQDVFAAVRRSLIKFESRGSGSFRAWLFRITRNLVVNHLTRS-----KGPIGSGDSHVQQWLMQQPERENETATLFDHELRRQQFQLAADRVQPHVEPATWQSFWMTAVEGKSISCVAESLGKSEGSVRMAKCRVLARLQQEAQAISSQ 196
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Match: A0A518HTB4_9BACT (RNA polymerase sigma factor RpoE n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HTB4_9BACT) HSP 1 Score: 211 bits (538), Expect = 1.080e-66 Identity = 104/181 (57.46%), Postives = 135/181 (74.59%), Query Frame = 1 Query: 1 NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGSFTSTGDGSFRRWLYRITRNLVVNQLTRGPFSGRRGPIGSGDSDVQKLLNQTPELDDQTATLFQLEYRRARFQQAADKVRNQFSDATWQCFWLTSVENQPAERVAAALGKTPGAVRVARCRVLAKIRQETQ 543 N PASEE W EF +YRPLV+RV AKGLQHADA+DLAQ+VF+AV +++G+FT G GSFR WL+RITRNLVVN LTR +GP+GSGDS + +LL Q P+ ++TATLF E RR +F AA++VR +F ATW FW T+V + VA++LGK+ GAVR+A+CRV A+++QE Q Sbjct: 16 NQPASEEVWMEFVTIYRPLVVRVGLAKGLQHADAEDLAQDVFAAVRRSLGTFTKRGQGSFRAWLFRITRNLVVNHLTRS-----KGPVGSGDSQMNRLLMQQPDRQNETATLFDHELRRQQFHLAAERVRPKFEPATWLAFWRTAVGGESISTVASSLGKSEGAVRMAKCRVFARLQQEAQ 191 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100225.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100225.54.1 >prot_M-pyrifera_M_contig100225.54.1 ID=prot_M-pyrifera_M_contig100225.54.1|Name=mRNA_M-pyrifera_M_contig100225.54.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp NDPASEEAWGEFAAVYRPLVIRVARAKGLQHADADDLAQNVFSAVGKAIGback to top mRNA from alignment at M-pyrifera_M_contig100225:121..681- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100225.54.1 ID=mRNA_M-pyrifera_M_contig100225.54.1|Name=mRNA_M-pyrifera_M_contig100225.54.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig100225:121..681- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100225:121..681- >mRNA_M-pyrifera_M_contig100225.54.1 ID=mRNA_M-pyrifera_M_contig100225.54.1|Name=mRNA_M-pyrifera_M_contig100225.54.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig100225:121..681- (Macrocystis pyrifera P11B4 male)back to top |