mRNA_M-pyrifera_M_contig100222.52.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100222.52.1
Unique NamemRNA_M-pyrifera_M_contig100222.52.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A2D7XVS5_9PROT (Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D7XVS5_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 8.320e-11
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   37 EKGW------------GAMVGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            E+GW            G ++GGYLE+R +YD P+FA PGEEPR +HLG+D+F+
Sbjct:   44 ERGWSDLPLDFAPENEGVLMGGYLENRSIYDSPVFATPGEEPRNLHLGLDVFA 96          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A399RMI6_9PROT (Peptidase M23 n=1 Tax=Henriciella algicola TaxID=1608422 RepID=A0A399RMI6_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 6.500e-10
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   49 GAMVGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            G + GGY EDR +YD P+F PPG+EPR +HLG+D+F+
Sbjct:   66 GVLHGGYGEDRAIYDTPIFNPPGDEPRTLHLGLDVFT 102          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A258H4S1_9PROT (Peptidase_M23 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 32-64-14 TaxID=1970492 RepID=A0A258H4S1_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-9
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    1 AAFCAKVDALEEEKGWGAMVGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            AA   K+DA +   G     GGY EDR VY   LFAP G+EPR +HLGID+F 
Sbjct:   27 AALPGKLDAPDVRPGEPLRAGGYGEDRSVYTQALFAPEGDEPRSVHLGIDVFG 79          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A399RKE1_9PROT (Peptidase M23 n=2 Tax=Henriciella mobilis TaxID=2305467 RepID=A0A399RKE1_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 3.150e-9
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   58 VGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            +GGY EDR +YD P+F P GEEPR IHLG+DIF+
Sbjct:   62 IGGYGEDRAIYDTPIFNPAGEEPRTIHLGLDIFA 95          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A4Q5XHK0_9PROT (Peptidase M23 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q5XHK0_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 3.630e-9
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    4 AFCAKVDALEEEKGWGAMVGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            A   K+D  + + G     GGY EDR VY   LFAP G+EPR +HLGID+F+
Sbjct:   27 AVAGKLDGADVKPGEPVRFGGYGEDRSVYTQTLFAPEGDEPRTVHLGIDVFA 78          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A2E0U454_9PROT (Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2E0U454_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 4.580e-9
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   37 EKGWGAM------------VGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            E+GW  +             GGY+EDR +YD P+FA  GEEPR +HLG+D+F+
Sbjct:   45 ERGWNDLSIHWQPPEGELWAGGYMEDRSIYDSPVFATEGEEPRTLHLGLDVFA 97          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A399QYT7_9PROT (Peptidase M23 n=2 Tax=Henriciella barbarensis TaxID=86342 RepID=A0A399QYT7_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 2.480e-8
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query:   49 GAMV-GGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            GA++ GGY EDR +YD P+F  PGEEPR +HLG+DIF+
Sbjct:   65 GAVLHGGYGEDRAIYDTPIFNCPGEEPRTLHLGLDIFA 102          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A2D7IVY4_9PROT (Peptidase M23 n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7IVY4_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-7
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   61 GGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            GGY+EDR +YD P+FA   +EPR +HLGID+F+
Sbjct:   62 GGYMEDRSIYDSPVFASGDQEPRTLHLGIDVFA 94          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: UPI000A0228BD (peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A0228BD)

HSP 1 Score: 54.3 bits (129), Expect = 2.560e-7
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   61 GGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            GGY E R +YD P+F PPG+ PR +HLG+DIF+
Sbjct:   67 GGYGETRAIYDTPIFNPPGQTPRTLHLGLDIFA 99          
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Match: A0A2D9RCI7_9PROT (Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RCI7_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 3.370e-7
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   55 MVGGYLEDRVVYDGPLFAPPGEEPRCIHLGIDIFS 159
            +VGGYLE+R +Y+ P+FA  G E R +HLG+DIF+
Sbjct:   63 LVGGYLEERAIYNSPVFAGDGHEARTLHLGLDIFA 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100222.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2D7XVS5_9PROT8.320e-1149.06Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=202090... [more]
A0A399RMI6_9PROT6.500e-1059.46Peptidase M23 n=1 Tax=Henriciella algicola TaxID=1... [more]
A0A258H4S1_9PROT2.820e-952.83Peptidase_M23 domain-containing protein n=1 Tax=Al... [more]
A0A399RKE1_9PROT3.150e-967.65Peptidase M23 n=2 Tax=Henriciella mobilis TaxID=23... [more]
A0A4Q5XHK0_9PROT3.630e-950.00Peptidase M23 n=1 Tax=Alphaproteobacteria bacteriu... [more]
A0A2E0U454_9PROT4.580e-945.28Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=202090... [more]
A0A399QYT7_9PROT2.480e-863.16Peptidase M23 n=2 Tax=Henriciella barbarensis TaxI... [more]
A0A2D7IVY4_9PROT1.710e-760.61Peptidase M23 n=2 Tax=Hyphomonadaceae TaxID=69657 ... [more]
UPI000A0228BD2.560e-760.61peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A2D9RCI7_9PROT3.370e-757.14Peptidase M23 n=1 Tax=Ponticaulis sp. TaxID=202090... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100222contigM-pyrifera_M_contig100222:6..164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.5905247-CDS-M-pyrifera_M_contig100222:5..1641622815497.5905247-CDS-M-pyrifera_M_contig100222:5..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100222 6..164 -
1692277438.5875516-CDS-M-pyrifera_M_contig100222:5..1641692277438.5875516-CDS-M-pyrifera_M_contig100222:5..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100222 6..164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100222.52.1prot_M-pyrifera_M_contig100222.52.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100222 6..164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100222.52.1

>prot_M-pyrifera_M_contig100222.52.1 ID=prot_M-pyrifera_M_contig100222.52.1|Name=mRNA_M-pyrifera_M_contig100222.52.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
AAFCAKVDALEEEKGWGAMVGGYLEDRVVYDGPLFAPPGEEPRCIHLGID
IFS
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mRNA from alignment at M-pyrifera_M_contig100222:6..164-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100222.52.1 ID=mRNA_M-pyrifera_M_contig100222.52.1|Name=mRNA_M-pyrifera_M_contig100222.52.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig100222:6..164- (Macrocystis pyrifera P11B4 male)
GCGGCATTCTGCGCCAAGGTGGACGCGTTGGAAGAGGAGAAAGGGTGGGG TGCAATGGTTGGGGGTTACTTGGAAGATCGGGTGGTGTATGATGGGCCTC TGTTTGCACCCCCTGGAGAAGAGCCACGCTGCATCCACCTCGGCATCGAC ATCTTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100222:6..164-

>mRNA_M-pyrifera_M_contig100222.52.1 ID=mRNA_M-pyrifera_M_contig100222.52.1|Name=mRNA_M-pyrifera_M_contig100222.52.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig100222:6..164- (Macrocystis pyrifera P11B4 male)
GCGGCATTCTGCGCCAAGGTGGACGCGTTGGAAGAGGAGAAAGGGTGGGG
TGCAATGGTTGGGGGTTACTTGGAAGATCGGGTGGTGTATGATGGGCCTC
TGTTTGCACCCCCTGGAGAAGAGCCACGCTGCATCCACCTCGGCATCGAC
ATCTTCTCCGCGGCATTCTGCGCCAAGGTGGACGCGTTGGAAGAGGAGAA
AGGGTGGGGTGCAATGGTTGGGGGTTACTTGGAAGATCGGGTGGTGTATG
ATGGGCCTCTGTTTGCACCCCCTGGAGAAGAGCCACGCTGCATCCACCTC
GGCATCGACATCTTCTCC
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