mRNA_M-pyrifera_M_contig100203.41.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig100203.41.1
Unique Name	mRNA_M-pyrifera_M_contig100203.41.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A2E7KB54_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KB54_9PLAN)

HSP 1 Score: 229 bits (584), Expect = 1.410e-75
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 1

Query:    1 MEAFVFNLFWILCSRVDCLLGASVLGASVLTEDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIAT 369
            MEAFVFNLFWILCSR +CLLGASVL     TEDSDF ERRGGVKRKLCCGLRVSVPEF VSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLN+LWAVFQCTHRPPRARSTIAT
Sbjct:    1 MEAFVFNLFWILCSRANCLLGASVL-----TEDSDFAERRGGVKRKLCCGLRVSVPEFRVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNNLWAVFQCTHRPPRARSTIAT 118

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517WA75_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WA75_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 1.290e-72
Identity = 113/134 (84.33%), Postives = 117/134 (87.31%), Query Frame = 1

Query:    1 MEAFVFNLFWILCSRVDCLLGASVLGASVLTEDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQ 402
            MEAFV NLFWILCSRVDCLLG  VL     TED DF ERRGGVKRKLCCGLRVS+PEF VSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHL++LW+VFQ THRPPRARSTIAT Y S   DQVQ
Sbjct:    1 MEAFVVNLFWILCSRVDCLLGVIVL-----TEDFDFAERRGGVKRKLCCGLRVSLPEFPVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLSNLWSVFQYTHRPPRARSTIATLYGSGSGDQVQ 129

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A6I6A855_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6A855_9PLAN)

HSP 1 Score: 174 bits (440), Expect = 1.230e-52
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 1

Query:   85 VLTEDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQY 405
            +L ++ D  + RGGVKRKLCCGLRVS+PEFSVSCISNALKVLRNDLK+YET RTGS+CSGEK+EKSTAIQV L++LW+VFQCTHRPPRARSTIAT Y S   DQVQ+
Sbjct:   19 LLFDEGDLRQGRGGVKRKLCCGLRVSLPEFSVSCISNALKVLRNDLKIYETARTGSECSGEKMEKSTAIQVLLSNLWSVFQCTHRPPRARSTIATLYGSGSGDQVQF 125

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A2E7KB71_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KB71_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 4.230e-37
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 1

Query:   85 VLTEDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQ 402
            ++ + +DFVERR GVKR+LC        E+SVS + N L VLRNDLK+YET RT + CSGEKLEKST IQV    L  VFQCTHRPPRARSTIAT YDSE  DQVQ
Sbjct:    1 MMIDRNDFVERRVGVKRELCFEYFGKCSEYSVSYLRNRLNVLRNDLKLYETGRTDAGCSGEKLEKSTVIQVKPGHLSVVFQCTHRPPRARSTIATLYDSESDDQVQ 106

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517QAT9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QAT9_9PLAN)

HSP 1 Score: 129 bits (324), Expect = 2.090e-35
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 1

Query:   94 EDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQ 402
            +D +FV RR GVK+ LC    VS  +  ++CIS  L +LRNDLKMYET R G   SGEKLEKSTAIQV L+ L+AVFQ THRPPRARSTIAT YDS  ADQVQ
Sbjct:   12 DDLNFVNRRAGVKQNLCSEFSVSCLDLLLNCISVVLSLLRNDLKMYETFRIGDFYSGEKLEKSTAIQVDLSHLYAVFQYTHRPPRARSTIATIYDSGSADQVQ 114

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517Q7S4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q7S4_9PLAN)

HSP 1 Score: 130 bits (327), Expect = 2.280e-35
Identity = 72/135 (53.33%), Postives = 88/135 (65.19%), Query Frame = 1

Query:    1 MEAFVFNLFWILCSRVDCLLGASVLGASVLTEDSDFVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQY 405
            M+ F+FNL W               G S++T+  DF E + GVK KLC    V+  +F VS +  AL VLR+DLKMYET RTGS C GEKLEKSTAIQV+LN L+A+F C+H PPRARST A +Y SE  DQ Q+
Sbjct:    1 MKQFLFNLLW---------------GLSLITDVFDFAEWQVGVKGKLCSEWAVNCFDFMVSLLRFALNVLRDDLKMYETGRTGSCCFGEKLEKSTAIQVNLNHLFALFPCSHHPPRARSTFAQQYGSESGDQGQF 120

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517PUB5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PUB5_9PLAN)

HSP 1 Score: 126 bits (316), Expect = 6.500e-35
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1

Query:  106 FVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTI 363
            F E R GVKR+LC    V+  E SV CISNAL VLRNDLK+Y+T RTGSDCSGEK  KSTAIQV LN LW+VFQCTH PPRARS I
Sbjct:    5 FAEGRVGVKRRLCSWSVVNGSELSVRCISNALSVLRNDLKLYDTERTGSDCSGEKRTKSTAIQVFLNQLWSVFQCTHHPPRARSRI 90

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: UPI0011A682CD (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI0011A682CD)

HSP 1 Score: 114 bits (284), Expect = 7.870e-30
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1

Query:  226 MYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQY 405
            MYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIAT Y S   DQVQ+
Sbjct:    1 MYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATLYGSGSGDQVQF 60

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BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517W6Z1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W6Z1_9PLAN)

HSP 1 Score: 111 bits (278), Expect = 5.050e-29
Identity = 64/104 (61.54%), Postives = 70/104 (67.31%), Query Frame = 1

Query:  121 GGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTIATKYDSERADQVQYEQVDERDVQ 432
            GG  R  C    VS  EF+VS     L VLRNDLK Y T  TGS CSGEKLEKSTAIQV L+ L  VFQCTHRPPRARSTIA KY + R DQ Q+E +   +VQ
Sbjct:    4 GGRSRGFCFDFAVSGGEFAVSGWRVWLNVLRNDLKSYGTAGTGSFCSGEKLEKSTAIQVVLSHLSVVFQCTHRPPRARSTIAIKYLTARGDQGQFEHLRVGEVQ 107

[Close]

BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Match: A0A517WI51_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WI51_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 5.360e-29
Identity = 58/86 (67.44%), Postives = 62/86 (72.09%), Query Frame = 1

Query:  106 FVERRGGVKRKLCCGLRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVHLNDLWAVFQCTHRPPRARSTI 363
            F E R GVKRKLC    V+  E SVSCISNAL VLRNDL +YET  + SD S EK  KSTAIQV L  LW+VFQCTH PPRARS I
Sbjct:    5 FAEGRVGVKRKLCSRSVVNGSELSVSCISNALSVLRNDLILYETECSSSDGSSEKWTKSTAIQVFLRQLWSVFQCTHHPPRARSRI 90

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig100203.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7KB54_9PLAN	1.410e-75	91.87	Uncharacterized protein (Fragment) n=2 Tax=Gimesia...	[more]
A0A517WA75_9PLAN	1.290e-72	84.33	Uncharacterized protein n=2 Tax=Gimesia chilikensi...	[more]
A0A6I6A855_9PLAN	1.230e-52	77.57	Uncharacterized protein n=1 Tax=Gimesia benthica T...	[more]
A0A2E7KB71_9PLAN	4.230e-37	65.09	Uncharacterized protein n=3 Tax=Gimesia TaxID=1649...	[more]
A0A517QAT9_9PLAN	2.090e-35	66.02	Uncharacterized protein n=2 Tax=Gimesia panareensi...	[more]
A0A517Q7S4_9PLAN	2.280e-35	53.33	Uncharacterized protein n=1 Tax=Gimesia panareensi...	[more]
A0A517PUB5_9PLAN	6.500e-35	72.09	Uncharacterized protein n=1 Tax=Gimesia chilikensi...	[more]
UPI0011A682CD	7.870e-30	90.00	hypothetical protein n=1 Tax=Gimesia chilikensis T...	[more]
A0A517W6Z1_9PLAN	5.050e-29	61.54	Uncharacterized protein n=2 Tax=Gimesia chilikensi...	[more]
A0A517WI51_9PLAN	5.360e-29	67.44	Uncharacterized protein n=1 Tax=Gimesia chilikensi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig100203	contig	M-pyrifera_M_contig100203:86..520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	435
Cds size	435
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815496.8184786-CDS-M-pyrifera_M_contig100203:85..520	1622815496.8184786-CDS-M-pyrifera_M_contig100203:85..520	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100203 86..520 -
1692277438.4133713-CDS-M-pyrifera_M_contig100203:85..520	1692277438.4133713-CDS-M-pyrifera_M_contig100203:85..520	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100203 86..520 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig100203.41.1	prot_M-pyrifera_M_contig100203.41.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig100203 86..520 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig100203:86..520-
coding sequence from alignment at M-pyrifera_M_contig100203:86..520-

protein sequence of mRNA_M-pyrifera_M_contig100203.41.1

>prot_M-pyrifera_M_contig100203.41.1 ID=prot_M-pyrifera_M_contig100203.41.1|Name=mRNA_M-pyrifera_M_contig100203.41.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MEAFVFNLFWILCSRVDCLLGASVLGASVLTEDSDFVERRGGVKRKLCCG
LRVSVPEFSVSCISNALKVLRNDLKMYETVRTGSDCSGEKLEKSTAIQVH
LNDLWAVFQCTHRPPRARSTIATKYDSERADQVQYEQVDERDVQ*

mRNA from alignment at M-pyrifera_M_contig100203:86..520-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig100203.41.1 ID=mRNA_M-pyrifera_M_contig100203.41.1|Name=mRNA_M-pyrifera_M_contig100203.41.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig100203:86..520- (Macrocystis pyrifera P11B4 male)
ATGGAAGCGTTTGTTTTCAATCTGTTCTGGATTCTCTGTTCTCGGGTGGA
CTGTCTGTTGGGGGCGAGTGTGTTGGGGGCGAGTGTGTTGACTGAGGACT
CTGATTTTGTGGAAAGGCGCGGGGGTGTCAAGCGAAAATTGTGCTGTGGG
CTGCGGGTGAGTGTGCCTGAGTTTTCGGTGAGTTGCATTTCAAATGCTCT
GAAAGTGCTCCGAAATGATTTGAAAATGTACGAGACAGTTCGAACCGGTT
CTGACTGTTCCGGTGAAAAACTGGAAAAATCGACGGCGATTCAGGTGCAT
CTGAATGACTTGTGGGCGGTGTTCCAGTGCACGCATCGTCCGCCTCGCGC
GCGAAGCACAATTGCAACAAAATACGATTCGGAAAGAGCCGATCAAGTTC
AATATGAGCAGGTCGATGAGAGGGACGTTCAGTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100203:86..520-

>mRNA_M-pyrifera_M_contig100203.41.1 ID=mRNA_M-pyrifera_M_contig100203.41.1|Name=mRNA_M-pyrifera_M_contig100203.41.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig100203:86..520- (Macrocystis pyrifera P11B4 male)
ATGGAAGCGTTTGTTTTCAATCTGTTCTGGATTCTCTGTTCTCGGGTGGA
CTGTCTGTTGGGGGCGAGTGTGTTGGGGGCGAGTGTGTTGACTGAGGACT
CTGATTTTGTGGAAAGGCGCGGGGGTGTCAAGCGAAAATTGTGCTGTGGG
CTGCGGGTGAGTGTGCCTGAGTTTTCGGTGAGTTGCATTTCAAATGCTCT
GAAAGTGCTCCGAAATGATTTGAAAATGTACGAGACAGTTCGAACCGGTT
CTGACTGTTCCGGTGAAAAACTGGAAAAATCGACGGCGATTCAGGTGCAT
CTGAATGACTTGTGGGCGGTGTTCCAGTGCACGCATCGTCCGCCTCGCGC
GCGAAGCACAATTGCAACAAAATACGATTCGGAAAGAGCCGATCAAGTTC
AATATGAGCAGGTCGATGAGAGGGACGTTCAGTGAATGGAAGCGTTTGTT
TTCAATCTGTTCTGGATTCTCTGTTCTCGGGTGGACTGTCTGTTGGGGGC
GAGTGTGTTGGGGGCGAGTGTGTTGACTGAGGACTCTGATTTTGTGGAAA
GGCGCGGGGGTGTCAAGCGAAAATTGTGCTGTGGGCTGCGGGTGAGTGTG
CCTGAGTTTTCGGTGAGTTGCATTTCAAATGCTCTGAAAGTGCTCCGAAA
TGATTTGAAAATGTACGAGACAGTTCGAACCGGTTCTGACTGTTCCGGTG
AAAAACTGGAAAAATCGACGGCGATTCAGGTGCATCTGAATGACTTGTGG
GCGGTGTTCCAGTGCACGCATCGTCCGCCTCGCGCGCGAAGCACAATTGC
AACAAAATACGATTCGGAAAGAGCCGATCAAGTTCAATATGAGCAGGTCG
ATGAGAGGGACGTTCAGTGA