mRNA_M-pyrifera_M_contig100180.34.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100180.34.1
Unique NamemRNA_M-pyrifera_M_contig100180.34.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A3D5DEP5_9GAMM (Rhodanese domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEP5_9GAMM)

HSP 1 Score: 199 bits (506), Expect = 1.190e-62
Identity = 98/141 (69.50%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 RMVTTELNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAGWVRYDLPVTADNRPGTSYVTLLTPAKRRK 423
            +M TT LNPLEAFA  E D  A+YVDVR VAEFAVR  K A V+N+P VFFHPTTK  HPN SFLLV+NDVF K AR+ILGAD G RA DA + L DDGFTNV+ MSQG  GW +++ P TADNRPG SYV+LLTPAKRRK
Sbjct:   53 KMTTTILNPLEAFAVLEDDEQATYVDVRAVAEFAVRHPKAANVINIPFVFFHPTTKEIHPNASFLLVVNDVFQKSARIILGADGGTRAVDATKTLLDDGFTNVSAMSQGHQGWEQFNFPTTADNRPGVSYVSLLTPAKRRK 193          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A836TSH4_9PROT (Rhodanese-like domain-containing protein n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TSH4_9PROT)

HSP 1 Score: 132 bits (332), Expect = 8.980e-37
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   19 LNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAGWVRYDLPVTADNRPGTSYVTLLTPAKRRK 423
            +N   A  +   +  A+Y+DVRTVAEF   + K  R +NVP+ F+HP TKATHPND+F+LVM       A +I+GAD G R+  AA+ L   GFT + V+++G A W +  LPVT DNR G SYV+LLTP +R K
Sbjct:   20 INAKNAAEKIGPEGEATYIDVRTVAEFTEGRPK-GRAINVPVEFYHPKTKATHPNDAFILVMQHTLDTAAPVIVGADAGDRSDTAAEALVSAGFTQIEVLNEGIAAWEKAGLPVTGDNRDGVSYVSLLTPVRRAK 153          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A7Y4U6N9_9DELT (Rhodanese-like domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4U6N9_9DELT)

HSP 1 Score: 127 bits (319), Expect = 6.810e-35
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    4 MVTTELNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAGWVRYDLPVTADNRPGTSYVTLLTPAKRR 420
            M T  L+P E  +    +  A Y+DVRTVAEFA    + A+VVN+PI+F HP+ + T+PN SFL V+ D++ K+  L++G   GPRA  AA+ L   G+ NVA +  G++GW   +LP T DNR G SYV+LL   KR+
Sbjct:    3 MSTKSLSPQETHSLLSNNTEAIYIDVRTVAEFATGHPR-AKVVNIPILFRHPSKEETYPNQSFLTVVEDLYPKETPLVIGCGKGPRATQAAEQLVAAGYANVATLEGGYSGWKDNNLPTTKDNREGVSYVSLLMKVKRK 140          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A534NL40_9DELT (Rhodanese-like domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534NL40_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 7.090e-15
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    4 MVTTELNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAG------------WVRYDLPVTADNRPGTSYVTLLTPAK 414
            MV  +++  EA    +++    Y+DVRTV EF     K    VN+P+ F  P  +    N+ F+ V+   FA+D ++I+G   GPRA  AA++L + G+ +V+ M  GF G            W     PV+ +N  G SY +L    K
Sbjct:    1 MVVKQISVQEAHDILQKEPACIYIDVRTVREFVAGHPKGG--VNIPVAFPDPG-RGMVMNEEFVKVVEGHFARDKKIIVGCQAGPRADAAARLLQEAGYQDVSSMQGGFGGMRDPFGQVIAQGWASLGFPVSQENGEGVSYESLAAKVK 146          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A0S8BPG8_9DELT (Rhodanese n=1 Tax=Myxococcales bacterium SG8_38 TaxID=1703407 RepID=A0A0S8BPG8_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 8.160e-9
Identity = 46/145 (31.72%), Postives = 60/145 (41.38%), Query Frame = 1
Query:    4 MVTTELNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGF------------AGWVRYDLPVTADNRPGTSYVTLL 402
            M    ++P+EA      D  A Y+DVR+V EF V     A   NVP  + H T     PN  FL V+  +F KD +L++G   G R+  AA  L   GF  V     G              GW    L +     P  +Y  LL
Sbjct:    1 MTVKRVSPVEADRLVREDGYA-YLDVRSVPEFEVAHP--AGAYNVP--YLHATASGMQPNPDFLPVVESLFPKDTKLVIGCRTGNRSLAAAHALLQAGFARVVDQRAGLDGTRNAFGQILEPGWEAEGLEIATVPEPYKTYAALL 140          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A4U1H3I8_9DELT (Rhodanese-like domain-containing protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1H3I8_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 1.600e-8
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1
Query:   70 YVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAG------------WVRYDLPVTADNRPGTSYVTLL 402
            YVDVR+  E+A      A  +NVP  F     +   PN  FL VM  ++ KDA+L+LG   G R+  AA++L   G+T++     GF G            W +  LPV A   PG +Y  LL
Sbjct:   23 YVDVRSEPEYAAGHP--AGALNVP--FMRAGERGMEPNLDFLDVMQALWPKDAKLVLGCRSGQRSMRAAEMLTAAGYTSLVDQRAGFEGSRNAFGAVTEPGWSQAGLPVEAST-PGGAYADLL 140          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A7X7GQQ4_9DELT (Rhodanese-like domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X7GQQ4_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-7
Identity = 38/93 (40.86%), Postives = 47/93 (50.54%), Query Frame = 1
Query:   58 ANASYVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGFAG 336
            A  +YVDVR+  EF       A  +NVPI   H       PN  FL VM  +F KDA+L++G   G R+A A   L   GF  +  MS GF G
Sbjct:   18 AGYTYVDVRSEPEFEAGHVPGA--LNVPIS--HQGPAGMVPNPDFLRVMEGLFPKDAKLVVGCKMGGRSAKATATLKQAGFVELCDMSAGFEG 106          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A850BL60_9DELT (Rhodanese-like domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BL60_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 2.610e-6
Identity = 37/122 (30.33%), Postives = 57/122 (46.72%), Query Frame = 1
Query:   70 YVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGF------------AGWVRYDLPVTADNRPGTSYVTL 399
            Y+DVR+  E+       A   N+P++  H       PN  FL ++  ++ K+A+++LG   G R+  AA+++   GFTN+     GF            AGW    LP +    PG SY  L
Sbjct:   23 YLDVRSEPEYNAGHPSGAH--NIPLM--HAGPAGMQPNIEFLDIVQGLYPKEAKIVLGCRSGQRSLRAAELMLSAGFTNIVDQRAGFDGSRDSFGGITEAGWGAVGLP-SETVTPGASYAEL 139          
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Match: A0A0K1E9A1_CHOCO (Sulfurtransferase n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E9A1_CHOCO)

HSP 1 Score: 52.8 bits (125), Expect = 7.710e-6
Identity = 44/122 (36.07%), Postives = 55/122 (45.08%), Query Frame = 1
Query:   70 YVDVRTVAEFAVRKQKTARVVNVPIVFFHPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFTNVAVMSQGF------------AGWVRYDLPVTADNRPGTSYVTL 399
            YVDVR+  E+A      A+  N+P     P       N  FL V+  +F KDA+LILG   G R+  AA+ L   G+T+V     GF             GW    LPV A   PG SY  L
Sbjct:   23 YVDVRSEPEYASGHPAGAK--NLPFQNVGPG--GMQANQDFLPVVQALFPKDAKLILGCRSGQRSLRAAEALLGAGYTDVIDQRAGFDGRRDMFGKLIEPGWSYAGLPV-AQATPGGSYAEL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100180.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3D5DEP5_9GAMM1.190e-6269.50Rhodanese domain-containing protein n=1 Tax=Gammap... [more]
A0A836TSH4_9PROT8.980e-3748.89Rhodanese-like domain-containing protein n=1 Tax=S... [more]
A0A7Y4U6N9_9DELT6.810e-3546.04Rhodanese-like domain-containing protein n=1 Tax=D... [more]
A0A534NL40_9DELT7.090e-1532.21Rhodanese-like domain-containing protein n=1 Tax=D... [more]
A0A0S8BPG8_9DELT8.160e-931.72Rhodanese n=1 Tax=Myxococcales bacterium SG8_38 Ta... [more]
A0A4U1H3I8_9DELT1.600e-835.77Rhodanese-like domain-containing protein n=1 Tax=P... [more]
A0A7X7GQQ4_9DELT1.190e-740.86Rhodanese-like domain-containing protein n=1 Tax=M... [more]
A0A850BL60_9DELT2.610e-630.33Rhodanese-like domain-containing protein n=1 Tax=P... [more]
A0A0K1E9A1_CHOCO7.710e-636.07Sulfurtransferase n=1 Tax=Chondromyces crocatus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100180contigM-pyrifera_M_contig100180:212..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog502025.Hoch_5503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rhodanese Homology Domain
EggNOG OGs1REHH@1224,2WPY5@28221,2Z0Z7@29,42SFZ@68525,COG0607@1,COG0607@2
COG Functional cat.P
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size429
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.4943364-UTR-M-pyrifera_M_contig100180:211..2141622815496.4943364-UTR-M-pyrifera_M_contig100180:211..214Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100180 212..214 +
1692277438.2752955-UTR-M-pyrifera_M_contig100180:211..2141692277438.2752955-UTR-M-pyrifera_M_contig100180:211..214Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100180 212..214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.520122-CDS-M-pyrifera_M_contig100180:214..6431622815496.520122-CDS-M-pyrifera_M_contig100180:214..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100180 215..643 +
1692277438.2856646-CDS-M-pyrifera_M_contig100180:214..6431692277438.2856646-CDS-M-pyrifera_M_contig100180:214..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100180 215..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100180.34.1prot_M-pyrifera_M_contig100180.34.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100180 215..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100180.34.1

>prot_M-pyrifera_M_contig100180.34.1 ID=prot_M-pyrifera_M_contig100180.34.1|Name=mRNA_M-pyrifera_M_contig100180.34.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MVTTELNPLEAFAEFERDANASYVDVRTVAEFAVRKQKTARVVNVPIVFF
HPTTKATHPNDSFLLVMNDVFAKDARLILGADDGPRAADAAQVLHDDGFT
NVAVMSQGFAGWVRYDLPVTADNRPGTSYVTLLTPAKRRKSA*
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mRNA from alignment at M-pyrifera_M_contig100180:212..643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100180.34.1 ID=mRNA_M-pyrifera_M_contig100180.34.1|Name=mRNA_M-pyrifera_M_contig100180.34.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig100180:212..643+ (Macrocystis pyrifera P11B4 male)
CGCATGGTCACGACTGAGCTGAACCCGCTCGAGGCGTTTGCCGAGTTCGA ACGCGATGCGAATGCCAGCTACGTCGACGTGCGCACGGTGGCGGAGTTTG CCGTGCGGAAACAAAAAACCGCGCGTGTCGTCAATGTCCCGATCGTGTTC TTCCATCCGACGACGAAAGCGACGCATCCGAATGACAGTTTCCTGCTCGT GATGAACGATGTGTTCGCGAAGGACGCGCGACTCATCCTCGGCGCCGACG ACGGTCCGCGTGCCGCCGATGCCGCGCAGGTACTGCACGATGACGGCTTC ACGAACGTCGCCGTCATGAGCCAGGGTTTCGCCGGCTGGGTCCGCTACGA TCTGCCCGTCACCGCCGACAACCGGCCCGGGACGAGCTACGTGACGCTGC TGACCCCGGCGAAGCGGCGTAAATCGGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100180:212..643+

>mRNA_M-pyrifera_M_contig100180.34.1 ID=mRNA_M-pyrifera_M_contig100180.34.1|Name=mRNA_M-pyrifera_M_contig100180.34.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig100180:212..643+ (Macrocystis pyrifera P11B4 male)
ATGGTCACGACTGAGCTGAACCCGCTCGAGGCGTTTGCCGAGTTCGAACG
CGATGCGAATGCCAGCTACGTCGACGTGCGCACGGTGGCGGAGTTTGCCG
TGCGGAAACAAAAAACCGCGCGTGTCGTCAATGTCCCGATCGTGTTCTTC
CATCCGACGACGAAAGCGACGCATCCGAATGACAGTTTCCTGCTCGTGAT
GAACGATGTGTTCGCGAAGGACGCGCGACTCATCCTCGGCGCCGACGACG
GTCCGCGTGCCGCCGATGCCGCGCAGGTACTGCACGATGACGGCTTCACG
AACGTCGCCGTCATGAGCCAGGGTTTCGCCGGCTGGGTCCGCTACGATCT
GCCCGTCACCGCCGACAACCGGCCCGGGACGAGCTACGTGACGCTGCTGA
CCCCGGCGAAGCGGCGTAAATCGGCCTAGATGGTCACGACTGAGCTGAAC
CCGCTCGAGGCGTTTGCCGAGTTCGAACGCGATGCGAATGCCAGCTACGT
CGACGTGCGCACGGTGGCGGAGTTTGCCGTGCGGAAACAAAAAACCGCGC
GTGTCGTCAATGTCCCGATCGTGTTCTTCCATCCGACGACGAAAGCGACG
CATCCGAATGACAGTTTCCTGCTCGTGATGAACGATGTGTTCGCGAAGGA
CGCGCGACTCATCCTCGGCGCCGACGACGGTCCGCGTGCCGCCGATGCCG
CGCAGGTACTGCACGATGACGGCTTCACGAACGTCGCCGTCATGAGCCAG
GGTTTCGCCGGCTGGGTCCGCTACGATCTGCCCGTCACCGCCGACAACCG
GCCCGGGACGAGCTACGTGACGCTGCTGACCCCGGCGAAGCGGCGTAAAT
CGGCCTAG
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