mRNA_M-pyrifera_M_contig100128.29.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig100128.29.1
Unique Name	mRNA_M-pyrifera_M_contig100128.29.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A358A5K8_9ACTN (Acyl-CoA thioesterase II (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A5K8_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 1.240e-57
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKL 306
            A+G LPD QVLHTCLLTYASDMTLLDTTLLPHG+G+ D ++ MASLDHAMWFHGPFRADEWLLYDQHTPAA+G RGLATGRVFT DGRL+ANVVQEGLIR++
Sbjct:  119 ANGDLPDGQVLHTCLLTYASDMTLLDTTLLPHGSGATDRSVMMASLDHAMWFHGPFRADEWLLYDQHTPAASGARGLATGRVFTQDGRLVANVVQEGLIRRV 220

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A6B1B3H8_9ACTN (Acyl-CoA thioesterase II n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3H8_9ACTN)

HSP 1 Score: 184 bits (467), Expect = 3.820e-56
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKLTR 312
            ADG LPDDQVLHTCLLTYASDMTLLDTTLLPHGT S    IQ+ASLDHAMWFHG FRADEWLLYDQ+TPA+ G RGLA GRVFTHDGRLIANVVQEGLIR+++R
Sbjct:  179 ADGRLPDDQVLHTCLLTYASDMTLLDTTLLPHGTNSEVGDIQLASLDHAMWFHGEFRADEWLLYDQYTPASNGARGLAIGRVFTHDGRLIANVVQEGLIRQISR 282

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A2E8L973_9ACTN (Acyl-CoA thioesterase II n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L973_9ACTN)

HSP 1 Score: 183 bits (464), Expect = 9.160e-56
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKL 306
            A+G LPD QVLHTCLLTYASDMTLLDTTLLPHG+G+ D ++ MASLDHAMWFHGPFRADEWLLYDQHTPAA+G RGLATGRVFT  GRL+ANVVQEGLIR++
Sbjct:  182 ANGDLPDGQVLHTCLLTYASDMTLLDTTLLPHGSGATDRSVMMASLDHAMWFHGPFRADEWLLYDQHTPAASGARGLATGRVFTQHGRLVANVVQEGLIRRV 283

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A6B1EAA2_9ACTN (Acyl-CoA thioesterase II n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EAA2_9ACTN)

HSP 1 Score: 177 bits (450), Expect = 1.040e-53
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKL 306
            A+GTL DD+VLHTCLLTYASDMTLLDTTL PHGT +A   + +ASLDHAMWFHGPFRADEWLLYDQHTPAA+G RGLATGRVFT DGRL+A+VVQEGLIR +
Sbjct:  178 ANGTLGDDEVLHTCLLTYASDMTLLDTTLAPHGTSAAHPGVMLASLDHAMWFHGPFRADEWLLYDQHTPAASGARGLATGRVFTRDGRLVASVVQEGLIRPI 279

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A7K2ARC8_9ACTN (Acyl-CoA thioesterase II n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2ARC8_9ACTN)

HSP 1 Score: 173 bits (438), Expect = 6.740e-52
Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKL 306
            A+GTL DD VLH CLLTYASD+TLLDT L PHGT +A+  + +ASLDHAMWFHGPFRADEWLLYDQHTPAA+G RGLATGRVFT +GRL+A+VVQEGLIR+L
Sbjct:  178 ANGTLGDDPVLHACLLTYASDLTLLDTALAPHGTSAANPRVMLASLDHAMWFHGPFRADEWLLYDQHTPAASGARGLATGRVFTREGRLVASVVQEGLIRRL 279

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A3M2H786_ACTSX (Acyl-CoA thioesterase II (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H786_ACTSX)

HSP 1 Score: 168 bits (426), Expect = 3.500e-50
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVV 282
            ADG LPDD VLHTCLLTYASDMTLLDTTLL HGTGS D  I MASLDHAMWFHGPFRAD+WLLYDQH+P+A+G RGLATGRVFT DGRL+A+VV
Sbjct:  179 ADGRLPDDPVLHTCLLTYASDMTLLDTTLLAHGTGSLDAGIMMASLDHAMWFHGPFRADDWLLYDQHSPSASGARGLATGRVFTRDGRLVASVV 272

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A094PPR9_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PPR9_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 3.140e-48
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRK 303
            ADGTLPDD  LH C++TYASDMTLLDTT+LPHG    D  +QMASLDHAMWFH PFRADEWLLYDQ TP  +G RGLATG ++THDG+L   VVQEGLIR+
Sbjct:  119 ADGTLPDDPTLHACIVTYASDMTLLDTTVLPHGLNWTDSGLQMASLDHAMWFHRPFRADEWLLYDQMTPTTSGARGLATGSIYTHDGQLAITVVQEGLIRR 219

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BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A7Y2GMB4_9ACTN (Acyl-CoA thioesterase II n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GMB4_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 1.780e-47
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRKLTR 312
            A+G LPDDQ+LHTCLLTYASDMTLLDT+L+PHG  S    I MASLDHAMWFH PFRADEWLLY Q TP+A+G RGLA G V+ HDG L+A+V+QEGLIR++T+
Sbjct:  181 ANGVLPDDQLLHTCLLTYASDMTLLDTSLVPHGISSMSGKIMMASLDHAMWFHRPFRADEWLLYAQDTPSASGARGLARGLVYQHDGTLVASVMQEGLIRRITK 284

[Close]

BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A4P5SFG4_9ACTN (Acyl-CoA thioesterase II n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5SFG4_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 5.050e-47
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRK 303
            ADGTLP+D  LH C++TYASDMTLLDTT+LPHG    D  +QMASLDHAMWFH PFRADEWLLYDQ TP  +G RGLATG ++THDG+L   VVQEGLIR+
Sbjct:  181 ADGTLPEDPTLHACIVTYASDMTLLDTTVLPHGLNWTDSGVQMASLDHAMWFHRPFRADEWLLYDQMTPTTSGARGLATGSIYTHDGQLAITVVQEGLIRR 281

[Close]

BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Match: A0A7K1C684_9ACTN (Acyl-CoA thioesterase II n=7 Tax=root TaxID=1 RepID=A0A7K1C684_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 2.560e-46
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 1

Query:    1 ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAMWFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIRK 303
            ADG LPDD  LH C++TYASDMTLLDTT+LPHG   +D  +QMASLDHAMWFH PFRADEWLLYDQ TP+ +  RGLATG +FTHDG+L   VVQEGLIR+
Sbjct:  190 ADGRLPDDPTLHACIVTYASDMTLLDTTVLPHGLNWSDSGLQMASLDHAMWFHRPFRADEWLLYDQMTPSTSNARGLATGSIFTHDGQLAITVVQEGLIRR 290

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig100128.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A358A5K8_9ACTN	1.240e-57	84.31	Acyl-CoA thioesterase II (Fragment) n=1 Tax=Acidim...	[more]
A0A6B1B3H8_9ACTN	3.820e-56	84.62	Acyl-CoA thioesterase II n=1 Tax=Acidimicrobiaceae...	[more]
A0A2E8L973_9ACTN	9.160e-56	83.33	Acyl-CoA thioesterase II n=6 Tax=Acidimicrobiaceae...	[more]
A0A6B1EAA2_9ACTN	1.040e-53	81.37	Acyl-CoA thioesterase II n=2 Tax=Acidimicrobiaceae...	[more]
A0A7K2ARC8_9ACTN	6.740e-52	78.43	Acyl-CoA thioesterase II n=7 Tax=Acidimicrobiaceae...	[more]
A0A3M2H786_ACTSX	3.500e-50	84.04	Acyl-CoA thioesterase II (Fragment) n=1 Tax=Actino...	[more]
A0A094PPR9_9ACTN	3.140e-48	73.27	Uncharacterized protein (Fragment) n=1 Tax=actinob...	[more]
A0A7Y2GMB4_9ACTN	1.780e-47	72.12	Acyl-CoA thioesterase II n=1 Tax=Acidimicrobiales ...	[more]
A0A4P5SFG4_9ACTN	5.050e-47	72.28	Acyl-CoA thioesterase II n=1 Tax=Actinomycetia bac...	[more]
A0A7K1C684_9ACTN	2.560e-46	72.28	Acyl-CoA thioesterase II n=7 Tax=root TaxID=1 RepI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig100128	contig	M-pyrifera_M_contig100128:3..317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	146.4
Seed ortholog evalue	7.7e-33
Seed eggNOG ortholog	1120950.KB892768_gene5364
Preferred name	tesB
KEGG ko	ko:K10805
KEGG Pathway	ko01040,map01040
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Acyl-CoA thioesterase
EggNOG OGs	2GJ1B@201174,4DN4N@85009,COG1946@1,COG1946@2
COG Functional cat.	I
Best tax level	Propionibacteriales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01004
Exons	1
Model size	315
Cds size	315
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815496.000221-CDS-M-pyrifera_M_contig100128:2..317	1622815496.000221-CDS-M-pyrifera_M_contig100128:2..317	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100128 3..317 +
1692277438.0320153-CDS-M-pyrifera_M_contig100128:2..317	1692277438.0320153-CDS-M-pyrifera_M_contig100128:2..317	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig100128 3..317 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig100128.29.1	prot_M-pyrifera_M_contig100128.29.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig100128 3..317 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig100128:3..317+
coding sequence from alignment at M-pyrifera_M_contig100128:3..317+

protein sequence of mRNA_M-pyrifera_M_contig100128.29.1

>prot_M-pyrifera_M_contig100128.29.1 ID=prot_M-pyrifera_M_contig100128.29.1|Name=mRNA_M-pyrifera_M_contig100128.29.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
ADGTLPDDQVLHTCLLTYASDMTLLDTTLLPHGTGSADDTIQMASLDHAM
WFHGPFRADEWLLYDQHTPAATGGRGLATGRVFTHDGRLIANVVQEGLIR
KLTR*

mRNA from alignment at M-pyrifera_M_contig100128:3..317+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig100128.29.1 ID=mRNA_M-pyrifera_M_contig100128.29.1|Name=mRNA_M-pyrifera_M_contig100128.29.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig100128:3..317+ (Macrocystis pyrifera P11B4 male)
GCCGACGGCACCCTGCCCGACGACCAGGTCCTCCACACCTGCCTGCTCAC
CTACGCGTCCGACATGACCCTGCTCGACACGACCCTGCTGCCACACGGCA
CCGGTTCCGCCGACGACACCATCCAGATGGCGAGCCTCGATCATGCCATG
TGGTTCCACGGCCCCTTCCGAGCCGACGAATGGCTGCTCTACGACCAGCA
CACCCCGGCCGCCACCGGTGGCCGTGGCCTCGCCACCGGCCGGGTGTTCA
CCCACGACGGGCGGCTGATCGCCAATGTCGTGCAAGAAGGGCTCATCCGG
AAGCTCACCCGGTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100128:3..317+

>mRNA_M-pyrifera_M_contig100128.29.1 ID=mRNA_M-pyrifera_M_contig100128.29.1|Name=mRNA_M-pyrifera_M_contig100128.29.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig100128:3..317+ (Macrocystis pyrifera P11B4 male)
GCCGACGGCACCCTGCCCGACGACCAGGTCCTCCACACCTGCCTGCTCAC
CTACGCGTCCGACATGACCCTGCTCGACACGACCCTGCTGCCACACGGCA
CCGGTTCCGCCGACGACACCATCCAGATGGCGAGCCTCGATCATGCCATG
TGGTTCCACGGCCCCTTCCGAGCCGACGAATGGCTGCTCTACGACCAGCA
CACCCCGGCCGCCACCGGTGGCCGTGGCCTCGCCACCGGCCGGGTGTTCA
CCCACGACGGGCGGCTGATCGCCAATGTCGTGCAAGAAGGGCTCATCCGG
AAGCTCACCCGGTGAGCCGACGGCACCCTGCCCGACGACCAGGTCCTCCA
CACCTGCCTGCTCACCTACGCGTCCGACATGACCCTGCTCGACACGACCC
TGCTGCCACACGGCACCGGTTCCGCCGACGACACCATCCAGATGGCGAGC
CTCGATCATGCCATGTGGTTCCACGGCCCCTTCCGAGCCGACGAATGGCT
GCTCTACGACCAGCACACCCCGGCCGCCACCGGTGGCCGTGGCCTCGCCA
CCGGCCGGGTGTTCACCCACGACGGGCGGCTGATCGCCAATGTCGTGCAA
GAAGGGCTCATCCGGAAGCTCACCCGGTGA