mRNA_M-pyrifera_M_contig10007.15.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10007.15.1
Unique NamemRNA_M-pyrifera_M_contig10007.15.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10007.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10007contigM-pyrifera_M_contig10007:3782..4392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10007.15.1prot_M-pyrifera_M_contig10007.15.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10007 3953..4327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.9821506-UTR-M-pyrifera_M_contig10007:3781..39521622815494.9821506-UTR-M-pyrifera_M_contig10007:3781..3952Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10007 3782..3952 +
1692277437.5395656-UTR-M-pyrifera_M_contig10007:3781..39521692277437.5395656-UTR-M-pyrifera_M_contig10007:3781..3952Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10007 3782..3952 +
1622815495.0187259-UTR-M-pyrifera_M_contig10007:4327..43921622815495.0187259-UTR-M-pyrifera_M_contig10007:4327..4392Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10007 4328..4392 +
1692277437.5642893-UTR-M-pyrifera_M_contig10007:4327..43921692277437.5642893-UTR-M-pyrifera_M_contig10007:4327..4392Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10007 4328..4392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.0007534-CDS-M-pyrifera_M_contig10007:3952..43271622815495.0007534-CDS-M-pyrifera_M_contig10007:3952..4327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10007 3953..4327 +
1692277437.5549407-CDS-M-pyrifera_M_contig10007:3952..43271692277437.5549407-CDS-M-pyrifera_M_contig10007:3952..4327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10007 3953..4327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10007.15.1

>prot_M-pyrifera_M_contig10007.15.1 ID=prot_M-pyrifera_M_contig10007.15.1|Name=mRNA_M-pyrifera_M_contig10007.15.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MHTLLVSGSSRAVKCLPKNILGHWEVRSATNESLLSPPARPPKKLRRPTD
GKPSTLLRGKPRLRLPFRDLAKARHISVAFLPCVCGAARCERNVSLVGEN
PTCSVRPGIKGMRGSIWSYDYGYA*
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mRNA from alignment at M-pyrifera_M_contig10007:3782..4392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10007.15.1 ID=mRNA_M-pyrifera_M_contig10007.15.1|Name=mRNA_M-pyrifera_M_contig10007.15.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=611bp|location=Sequence derived from alignment at M-pyrifera_M_contig10007:3782..4392+ (Macrocystis pyrifera P11B4 male)
CCCCGATGTCGCCTGCCGAGAAAAAAAAAAAACAGCAGGAAAAAAAAAAT
CAAGACGAAACACCGCACAAAAACTCGGCGAAAACGTCTCTCCTCGTCGT
TTTATCTACTAGACAGAGCACAAAACTGCAGAAGCAACGAAAGCCCTACA
GTAAACTATATACGATAGAACATGCATACTCTTCTTGTGTCGGGATCGAG
CCGGGCAGTCAAATGTCTCCCTAAAAATATCTTGGGACACTGGGAAGTTC
GTTCGGCAACAAATGAATCGCTCTTGTCCCCTCCGGCCCGGCCCCCAAAA
AAGCTTCGTCGACCAACAGACGGGAAACCATCGACACTACTGAGAGGCAA
GCCCCGCCTGCGCCTGCCTTTCAGAGACCTGGCAAAGGCCAGACATATCT
CAGTGGCATTCCTCCCGTGCGTTTGTGGTGCTGCTCGTTGCGAAAGAAAT
GTCTCCCTGGTCGGTGAAAACCCGACGTGCTCTGTCCGTCCCGGCATCAA
AGGGATGCGAGGGTCTATATGGTCATACGACTACGGCTATGCATGATATC
GAGTACACCCCCCCCGGCTTTGGTCATACGACTACGGCCATGCATGATAT
TGAGTACACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10007:3782..4392+

>mRNA_M-pyrifera_M_contig10007.15.1 ID=mRNA_M-pyrifera_M_contig10007.15.1|Name=mRNA_M-pyrifera_M_contig10007.15.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig10007:3782..4392+ (Macrocystis pyrifera P11B4 male)
ATGCATACTCTTCTTGTGTCGGGATCGAGCCGGGCAGTCAAATGTCTCCC
TAAAAATATCTTGGGACACTGGGAAGTTCGTTCGGCAACAAATGAATCGC
TCTTGTCCCCTCCGGCCCGGCCCCCAAAAAAGCTTCGTCGACCAACAGAC
GGGAAACCATCGACACTACTGAGAGGCAAGCCCCGCCTGCGCCTGCCTTT
CAGAGACCTGGCAAAGGCCAGACATATCTCAGTGGCATTCCTCCCGTGCG
TTTGTGGTGCTGCTCGTTGCGAAAGAAATGTCTCCCTGGTCGGTGAAAAC
CCGACGTGCTCTGTCCGTCCCGGCATCAAAGGGATGCGAGGGTCTATATG
GTCATACGACTACGGCTATGCATGAATGCATACTCTTCTTGTGTCGGGAT
CGAGCCGGGCAGTCAAATGTCTCCCTAAAAATATCTTGGGACACTGGGAA
GTTCGTTCGGCAACAAATGAATCGCTCTTGTCCCCTCCGGCCCGGCCCCC
AAAAAAGCTTCGTCGACCAACAGACGGGAAACCATCGACACTACTGAGAG
GCAAGCCCCGCCTGCGCCTGCCTTTCAGAGACCTGGCAAAGGCCAGACAT
ATCTCAGTGGCATTCCTCCCGTGCGTTTGTGGTGCTGCTCGTTGCGAAAG
AAATGTCTCCCTGGTCGGTGAAAACCCGACGTGCTCTGTCCGTCCCGGCA
TCAAAGGGATGCGAGGGTCTATATGGTCATACGACTACGGCTATGCATGA
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