mRNA_M-pyrifera_M_contig10.3.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10.3.1
Unique NamemRNA_M-pyrifera_M_contig10.3.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: D7FRF8_ECTSI (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-15
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 3 
Query:    3 DKCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHL 140
            DKC+YRRFDDMHHGFC+ARG+W+   QATRA EAID FVKF+  +L
Sbjct:  200 DKCQYRRFDDMHHGFCAARGDWANAVQATRAAEAIDAFVKFYTANL 245
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A261XVA5_9FUNG (DLH domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVA5_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 6.550e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:    3 DKCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHLVA 146
            DKC++ RFDD+HHGF +ARG+WS   QA RA +AID   KFF+ HL A
Sbjct:  192 DKCKHERFDDVHHGFAAARGDWSDETQAKRATQAIDLTSKFFNEHLKA 239
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A2G5BA18_COERN (Alpha/beta-hydrolase n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BA18_COERN)

HSP 1 Score: 65.1 bits (157), Expect = 3.610e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:    6 KCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFD 131
            KC+  RFDDM HGFC ARG+WS PEQA RA +AI   VKFF+
Sbjct:  195 KCQMVRFDDMFHGFCGARGDWSNPEQARRANDAIKLLVKFFN 236
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A1Y1WKS1_9FUNG (DLH domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WKS1_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 5.930e-9
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:    6 KCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFD 131
            +CE  RFDDM HGFC ARG+WS   QA RA +AI   VKFF+
Sbjct:   61 QCELVRFDDMFHGFCGARGDWSNETQAKRANDAIKLLVKFFN 102
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A835Z8A5_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.500e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:    9 CEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHLVA 146
            C Y RF+DMHHGFC+ARG+WS P  A RA EA+     F D +L A
Sbjct:  197 CVYHRFEDMHHGFCAARGDWSQPLIAQRASEAVAMLSDFMDKNLKA 242
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A8H7RHG7_9FUNG (DLH domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RHG7_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.680e-8
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 DKCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFF 128
            DKC+  RFDDMHHGFC+ARG+++ P  A RA EAI   V FF
Sbjct:  195 DKCKLVRFDDMHHGFCAARGDFTDPLNAKRANEAIQLTVDFF 236
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: L8H284_ACACA (Dienelactone hydrolase family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H284_ACACA)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 DKCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFF 128
            +K E++RFDD+HHGFC+ARG+WS   QA RA EAI     F+
Sbjct:  199 EKSEHKRFDDVHHGFCAARGDWSDELQAQRANEAIKLVANFY 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A4D9D470_9STRA (DLH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D470_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:   21 RFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHL 140
            +FDDMHHG+ +ARG+W  P+Q  RA EAI  FV FF  HL
Sbjct:  202 KFDDMHHGWVAARGDWKDPKQQARATEAIQRFVSFFTKHL 241
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BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A8J2L4N7_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2L4N7_9HEXA)

HSP 1 Score: 53.1 bits (126), Expect = 3.300e-7
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 3 
Query:    9 CEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHL 140
            C Y+RF+D+HHGF +ARGN+S P  A R  E I T   FF+ +L
Sbjct:    3 CGYKRFNDVHHGFAAARGNYSDPIVAARIEEVISTVKTFFNENL 46
[Close]
BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Match: A0A261XW89_9FUNG (DLH domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XW89_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 6.410e-7
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 3 
Query:    6 KCEYRRFDDMHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHL 140
            KC + RF+DMHHGF +ARG+W   EQ  RA EAI   V FF  +L
Sbjct:  198 KCTFTRFEDMHHGFAAARGDWENKEQNKRATEAIRLTVDFFRNNL 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FRF8_ECTSI1.180e-1571.74DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A261XVA5_9FUNG6.550e-1160.42DLH domain-containing protein n=1 Tax=Bifiguratus ... [more]
A0A2G5BA18_COERN3.610e-1066.67Alpha/beta-hydrolase n=1 Tax=Coemansia reversa (st... [more]
A0A1Y1WKS1_9FUNG5.930e-961.90DLH domain-containing protein n=1 Tax=Linderina pe... [more]
A0A835Z8A5_9STRA2.500e-856.52Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A8H7RHG7_9FUNG6.680e-861.90DLH domain-containing protein n=1 Tax=Mucor saturn... [more]
L8H284_ACACA1.290e-757.14Dienelactone hydrolase family protein n=1 Tax=Acan... [more]
A0A4D9D470_9STRA1.780e-760.00DLH domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A8J2L4N7_9HEXA3.300e-752.27Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A261XW89_9FUNG6.410e-755.56DLH domain-containing protein n=1 Tax=Bifiguratus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10contigM-pyrifera_M_contig10:7075..8807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size371
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10.3.1prot_M-pyrifera_M_contig10.3.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10 7107..8585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.07291-UTR-M-pyrifera_M_contig10:7074..71061622815494.07291-UTR-M-pyrifera_M_contig10:7074..7106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10 7075..7106 +
1692277436.3437097-UTR-M-pyrifera_M_contig10:7074..71061692277436.3437097-UTR-M-pyrifera_M_contig10:7074..7106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10 7075..7106 +
1622815494.116577-UTR-M-pyrifera_M_contig10:8585..88071622815494.116577-UTR-M-pyrifera_M_contig10:8585..8807Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10 8586..8807 +
1692277436.4416037-UTR-M-pyrifera_M_contig10:8585..88071692277436.4416037-UTR-M-pyrifera_M_contig10:8585..8807Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10 8586..8807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.0880542-CDS-M-pyrifera_M_contig10:7106..71321622815494.0880542-CDS-M-pyrifera_M_contig10:7106..7132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10 7107..7132 +
1692277436.365953-CDS-M-pyrifera_M_contig10:7106..71321692277436.365953-CDS-M-pyrifera_M_contig10:7106..7132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10 7107..7132 +
1622815494.1023066-CDS-M-pyrifera_M_contig10:8494..85851622815494.1023066-CDS-M-pyrifera_M_contig10:8494..8585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10 8495..8585 +
1692277436.4080486-CDS-M-pyrifera_M_contig10:8494..85851692277436.4080486-CDS-M-pyrifera_M_contig10:8494..8585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10 8495..8585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10.3.1

>prot_M-pyrifera_M_contig10.3.1 ID=prot_M-pyrifera_M_contig10.3.1|Name=mRNA_M-pyrifera_M_contig10.3.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
MHHGFCSARGNWSIPEQATRAGEAIDTFVKFFDTHLVA*
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mRNA from alignment at M-pyrifera_M_contig10:7075..8807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10.3.1 ID=mRNA_M-pyrifera_M_contig10.3.1|Name=mRNA_M-pyrifera_M_contig10.3.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1733bp|location=Sequence derived from alignment at M-pyrifera_M_contig10:7075..8807+ (Macrocystis pyrifera P11B4 male)
GGGACAAGTGCGAGTACCGCCGCTTCGACGACATGCACCATGGCTTCTGC
TCCGCGAGGTGATAAAACCACGTTGCGTAAATGGTTTGCCTTGACTTCCT
TGTTTCTCTGGCTTTCTTGGTTGCTCCCGTTTTCTCTCGGTTTTCCTATT
CCTGGACTTTCCTTGTTTTCTTAATTTTATCATTTTCTGGATGTTCTTTT
TTTCTGGCCTTTCTTGTTTTCTTCTCTTTTTTTTCCCTGAGTTTGTTGTT
TTATTGGCTTTCTTGTTCTGTTAGTTTCGATTGTTCGCTTCACTTCGTGG
GTCTCTTATTCGAGACTCTCTGTTTTTATCTTGTGAGGGGATCTGCCACT
GCCGTGTTATTGTTCATAAATGCACGGTTGAAAAAATGTACGTCAGCCTG
TGAGTTCGTCCAAATGTTGATGCTGATACTCGGCATTTCAACCTACGTAA
GTGATACCTGGTATACCGGTACCATTTGCTCTTCCAGCGTCTTGAAGAAT
CTACCTACCTATTCAGCAGGGTTGCACCTGCAAAGGTTCAGAGATCCTCA
CTTGACGAGCTCTACATGTCATCATTCCAAAATGGGTTTCTACAAAAAAA
AGGCACGCTTAACCTGATGAGCAATCTCATGACCAAGGTCCACCACCATT
GATTTTGTAAAAACGAACGATGAGGCATGCCTTCTTTGGTAGTTCCCCGG
GTGGGAAGCTCCATCGGTCCAGGTGACAAGCAAGATGGCGGAAACATGCT
ACCTCTAATTGCAACCACTATTCTAGCTTTGGTTTTACTCTGAGTACGAT
CAGCTTGCTGTTGTTGTCGCCCTTCTACAATGTCCAGCTCAAATCTCGAT
CCCTTTATTGCGAGTAGGCAAAAGAAAATCTCGAACTAGAATCGCAAAAC
GAAGCTACCGGTAAACTCCACGTTAACTTTTACCTCACATGGTTGTCAGG
GAGAAGCTTTCTCTATACCTGCCTCCAGCCCAACATCGACCAACTATTCC
TGCTGCCCTTTCTGCAGCGTTCTCCTACGAGTATGTCATAGTGTATATAC
ATCTACCATAAGTTTTTTCCTTGTACATAGTAAGCCGCATTTAGGCTCCA
ACACCACGCCATGGGTGTCAGGCTGCCCCTCCCCCTCGCATCTATCTCTA
GTCTCCTGGTGACCCAGCGATTGGAGTTTGAAGCGAGACAGCCGCCCCAC
GATGGCTACCTGTGTGGTAGTCGAGACTATCTGCAAGAGGCGCTGCTGGC
AGATTCCCTTTCGGTCAAGGTATATACTGCTGATTACTAAGTAAATCAGC
GTTGCTTCGATCGCTCTTGTCAGGGTATGTAATATTATTGGCTTCCTGTT
TCAATGTCAAGTGTCTCAATTTCGCTGCTTGATTTGTTGTTCTTGTGCGT
TTTTTGTCTCTGCTGCTTAGGGGCAATTGGTCCATCCCGGAGCAAGCGAC
TAGGGCTGGCGAAGCAATCGACACTTTCGTCAAGTTTTTCGACACCCATC
TCGTAGCTTAAGTCTACACAGGCGGCGCACACGTGGAAAATCCGCGTTCC
TGGCAATGGACAACCATTGGCTACACTTCAACCATTTGCTCTACGACAAC
TATTGTTGGGACAGGGCAACCGTTGTCAACGTGACAACCATTGACGGTAT
AACAACCATTGACCACAAATAACGGCCATTTCATAACCCAAAAAACATTA
TCTACATCACAACCAATATCTGCTTGACCAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10:7075..8807+

>mRNA_M-pyrifera_M_contig10.3.1 ID=mRNA_M-pyrifera_M_contig10.3.1|Name=mRNA_M-pyrifera_M_contig10.3.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig10:7075..8807+ (Macrocystis pyrifera P11B4 male)
ATGCACCATGGCTTCTGCTCCGCGAGATGCACCATGGCTTCTGCTCCGCG
AGGGGCAATTGGTCCATCCCGGAGCAAGCGACTAGGGCTGGCGAAGCAAT
CGACACTTTCGTCAAGTTTTTCGACACCCATCTCGTAGCTTAAGGGCAAT
TGGTCCATCCCGGAGCAAGCGACTAGGGCTGGCGAAGCAATCGACACTTT
CGTCAAGTTTTTCGACACCCATCTCGTAGCTTAA
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