mRNA_L-elsbetiae_contig10505.498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10505.498.1
Unique NamemRNA_L-elsbetiae_contig10505.498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.490e-53
Identity = 92/101 (91.09%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MPRSQRNQKVSLTKT+KKGRELKQGIVS VRK VDEYPS+YVFSFVNLRSKLLKEVR+DFR+DSRFFMGKNKVM+LALGKS+QDEYQDNLR+VSKRLKGQV
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQV 101
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: UPI000A2A4B7E (mRNA turnover protein 4 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4B7E)

HSP 1 Score: 115 bits (287), Expect = 3.370e-30
Identity = 62/100 (62.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQ 300
            MP+S+RN+ VSLT+T KKG E K G++  +++ VD+Y SLYVFS  N+R+  LK+VR +  K SRFF GKNKVM++ALGKS +DEY++NLREVSKRLKGQ
Sbjct:    1 MPKSKRNKIVSLTRTKKKGLETKSGLIKEIQECVDQYKSLYVFSVENMRNSKLKDVR-EXWKHSRFFFGKNKVMIIALGKSAEDEYKENLREVSKRLKGQ 99
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC)

HSP 1 Score: 115 bits (287), Expect = 1.090e-29
Identity = 63/101 (62.38%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MPRS+R+QKVSLTKT  KG+E K G ++ VR+++D + SLYVFSF ++RS   K+VR+D+R DSRFFMGKNKVM  ALG   +DE++DNLR +SKRL GQV
Sbjct:   22 MPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDWR-DSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQV 121
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-29
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQ 300
            MP+S+RN+ VSLT T KKGR LKQ ++  +R  +D +  L+VF + N+RS+L+K+VR+DFR DSRFFMGKN +M  ALG S +DEY DNLR+VS+ ++GQ
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQ 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A668AVT8_9TELE (Ribosome assembly factor mrt4 n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668AVT8_9TELE)

HSP 1 Score: 111 bits (277), Expect = 3.280e-28
Identity = 60/101 (59.41%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MP+S+R++K+SLTKT KKG ELKQ ++  +RK VD Y +L+VFS  N+R+  LK++R  + K SRFF GKNKVMM+ALGK Q DEY+DNL +VSK L+G+V
Sbjct:    1 MPKSKRDKKISLTKTAKKGLELKQNLMEELRKCVDIYKNLFVFSVANMRNNKLKDIRTAW-KHSRFFFGKNKVMMVALGKGQTDEYKDNLHKVSKHLRGEV 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: UPI001EE2E93E (mRNA turnover protein 4 homolog n=1 Tax=Equus quagga TaxID=89248 RepID=UPI001EE2E93E)

HSP 1 Score: 108 bits (270), Expect = 3.500e-28
Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MP+S+R++KVSLTKT KKG ELKQ ++  +RK VD Y  L++FS  N+R+  LK++R  + K SR F GKNKVMM+ALG+S  DEY+DNL +VSK+L+G+V
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW-KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEV 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK)

HSP 1 Score: 110 bits (275), Expect = 3.880e-28
Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MP+S+R++KVSLTKT+ KGR+ KQ +V  VR+++DE+ +LY F F N+RS   KE R D+R DSRFF+GKNK+M +ALG++ +DEYQD LR +SK L G V
Sbjct:    1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADWR-DSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNV 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A7J8A980_PIPKU (MRT4-like protein, ribosome maturation factor n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J8A980_PIPKU)

HSP 1 Score: 108 bits (269), Expect = 4.690e-28
Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MP+S+R++KVSLTKT KKG ELKQ ++  +RK VD Y  L++FS  N+R+  LK++R  + K SR F GKNKVMM+ALG+S  DEY+DNL +VSK+L+G+V
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW-KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLRGEV 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A8C4YWY6_GADMO (Ribosome assembly factor mrt4 n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4YWY6_GADMO)

HSP 1 Score: 110 bits (276), Expect = 5.670e-28
Identity = 60/101 (59.41%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQV 303
            MP+S+R++KVSLTKT KKG E KQ ++  VRK VD Y +L++FS  N+R+  LK++R  + K SRFF GKNKVMM+ALGK + DEY+DNL +VSK LKG+V
Sbjct:    1 MPKSKRDKKVSLTKTTKKGLESKQNLIEEVRKCVDVYQNLFIFSVANMRNNKLKDIRTAW-KHSRFFFGKNKVMMVALGKGRTDEYKDNLHKVSKLLKGEV 100
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BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Match: A0A6P8HBI4_ACTTE (Ribosome assembly factor mrt4 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HBI4_ACTTE)

HSP 1 Score: 110 bits (274), Expect = 5.750e-28
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQ 300
            MP+S+RN+ VSLT+T KKG E K G+V  V+  +DEY  +YVFS  N+R+  LK+VR ++ K SRFF GKNKVM++ALGK+ +DEY++NL E+SKRLKGQ
Sbjct:    1 MPKSKRNKIVSLTRTKKKGLETKSGLVKEVQDCIDEYKDIYVFSVENMRNSKLKDVREEW-KHSRFFFGKNKVMIIALGKTPEDEYRENLHELSKRLKGQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10505.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI4.490e-5391.09RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
UPI000A2A4B7E3.370e-3062.00mRNA turnover protein 4 homolog n=1 Tax=Exaiptasia... [more]
I2CRG5_NANGC1.090e-2962.38Ribosome assembly factor mrt4 (Fragment) n=1 Tax=N... [more]
A0A835Z2W2_9STRA1.170e-2957.00Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
A0A668AVT8_9TELE3.280e-2859.41Ribosome assembly factor mrt4 n=2 Tax=Myripristis ... [more]
UPI001EE2E93E3.500e-2857.43mRNA turnover protein 4 homolog n=1 Tax=Equus quag... [more]
A0A6V1SP53_HETAK3.880e-2857.43Ribosome assembly factor mrt4 n=1 Tax=Heterosigma ... [more]
A0A7J8A980_PIPKU4.690e-2857.43MRT4-like protein, ribosome maturation factor n=1 ... [more]
A0A8C4YWY6_GADMO5.670e-2859.41Ribosome assembly factor mrt4 n=2 Tax=Gadus morhua... [more]
A0A6P8HBI4_ACTTE5.750e-2859.00Ribosome assembly factor mrt4 n=1 Tax=Actinia tene... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10505contigL-elsbetiae_contig10505:6012..6314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog2880.D7G6X6
Preferred nameMRTO4
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0244@1,KOG0816@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-01_011870.1
Exons1
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815274.8912861-CDS-L-elsbetiae_contig10505:6011..63141622815274.8912861-CDS-L-elsbetiae_contig10505:6011..6314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 6012..6314 +
1691682810.8630216-CDS-L-elsbetiae_contig10505:6011..63141691682810.8630216-CDS-L-elsbetiae_contig10505:6011..6314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 6012..6314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10505.498.1prot_L-elsbetiae_contig10505.498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10505 6012..6314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10505.498.1

>prot_L-elsbetiae_contig10505.498.1 ID=prot_L-elsbetiae_contig10505.498.1|Name=mRNA_L-elsbetiae_contig10505.498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MPRSQRNQKVSLTKTNKKGRELKQGIVSYVRKSVDEYPSLYVFSFVNLRS
KLLKEVRMDFRKDSRFFMGKNKVMMLALGKSQQDEYQDNLREVSKRLKGQ
V
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mRNA from alignment at L-elsbetiae_contig10505:6012..6314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10505.498.1 ID=mRNA_L-elsbetiae_contig10505.498.1|Name=mRNA_L-elsbetiae_contig10505.498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig10505:6012..6314+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCGATCACAGCGAAATCAAAAGGTGTCCTTGACAAAGACAAACAA
GAAAGGTCGAGAGCTTAAGCAGGGTATCGTCAGCTATGTGCGGAAATCCG
TCGACGAATACCCCAGCCTTTACGTGTTTTCGTTCGTGAACTTGAGGAGC
AAGCTCTTGAAGGAGGTTAGGATGGACTTTAGGAAGGATAGCCGCTTCTT
CATGGGCAAGAACAAGGTCATGATGCTGGCGCTAGGGAAGTCCCAGCAGG
ATGAGTACCAGGACAACTTGCGAGAAGTCAGCAAGCGGTTGAAAGGACAG
GTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10505:6012..6314+

>mRNA_L-elsbetiae_contig10505.498.1 ID=mRNA_L-elsbetiae_contig10505.498.1|Name=mRNA_L-elsbetiae_contig10505.498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig10505:6012..6314+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCGATCACAGCGAAATCAAAAGGTGTCCTTGACAAAGACAAACAA
GAAAGGTCGAGAGCTTAAGCAGGGTATCGTCAGCTATGTGCGGAAATCCG
TCGACGAATACCCCAGCCTTTACGTGTTTTCGTTCGTGAACTTGAGGAGC
AAGCTCTTGAAGGAGGTTAGGATGGACTTTAGGAAGGATAGCCGCTTCTT
CATGGGCAAGAACAAGGTCATGATGCTGGCGCTAGGGAAGTCCCAGCAGG
ATGAGTACCAGGACAACTTGCGAGAAGTCAGCAAGCGGTTGAAAGGACAG
GTGATGCCGCGATCACAGCGAAATCAAAAGGTGTCCTTGACAAAGACAAA
CAAGAAAGGTCGAGAGCTTAAGCAGGGTATCGTCAGCTATGTGCGGAAAT
CCGTCGACGAATACCCCAGCCTTTACGTGTTTTCGTTCGTGAACTTGAGG
AGCAAGCTCTTGAAGGAGGTTAGGATGGACTTTAGGAAGGATAGCCGCTT
CTTCATGGGCAAGAACAAGGTCATGATGCTGGCGCTAGGGAAGTCCCAGC
AGGATGAGTACCAGGACAACTTGCGAGAAGTCAGCAAGCGGTTGAAAGGA
CAGGTG
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