mRNA_L-elsbetiae_contig1757.4948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1757.4948.1
Unique NamemRNA_L-elsbetiae_contig1757.4948.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1757.4948.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.340e-43
Identity = 93/152 (61.18%), Postives = 105/152 (69.08%), Query Frame = 2 
Query:  788 HVGGHILKEKALQVSTVCGFCGGVGCRTTIRASAGKAADVVHSTCSSAPRKDGREEAVQLSLKSARAGSDTSPCTNIVLKCIFCPQETFIWKYGMVDHVTRCHPTDTALEAGTERATIFKQGYTVSESEKRKVLTKVKIGAPRSRRDNNILP 1243
            HVGG     K   VSTVCGFCGGVGCR+TI    G+A  +VHSTC SAPR D R+EAV L+L SARA SDTSPCTN+VLKC  C Q+ +IW YGM DHVTRCH  +  +  GT  A  FK+  T+SESEK KVL KVK G PR R   N LP
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTG-ADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLP 1225
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BLAST of mRNA_L-elsbetiae_contig1757.4948.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.400e-37
Identity = 82/130 (63.08%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  794 GGHILKEKALQVSTVCGFCGGVGCRTTIRASAGKAADVVHSTCSSAPRKDGREEAVQLSLKSARAGSDTSPCTNIVLKCIFCPQETFIWKYGMVDHVTRCHPTDTALEAGTERATIFKQGYTVSESEKRK 1183
            GGHILK+K   VST CGFCGGVG  TTI    GKA  +VHSTC SAPR D R+EAV L+L SARAGSDTS CTN+V KC FC Q  +IWKY M DH+TRCH  D  +  GT  A  FK+  T+SESEK K
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTG-ADNFKETCTISESEKAK 528
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BLAST of mRNA_L-elsbetiae_contig1757.4948.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-19
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = 2 
Query: 1016 IVLKCIFCPQETFIWKYGMVDHVTRCHPTDTALEAGTERATIFKQGYTVSESEKRKVLTKVKIGAPRSR-RDNNILPSGVRRRVSGNGGPGDGTTGARA 1309
            +VLKC+FC Q+T+IWKYGM +HVTRCH  D  + AGT     FK+ YT+SESEK KVL K K G PR R + N  LP+G      GNG  G   +G R+
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTT-VDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRS 98
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BLAST of mRNA_L-elsbetiae_contig1757.4948.1 vs. uniprot
Match: D6RP41_COPC7 (Uncharacterized protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=D6RP41_COPC7)

HSP 1 Score: 56.2 bits (134), Expect = 4.520e-5
Identity = 41/152 (26.97%), Postives = 64/152 (42.11%), Query Frame = 2 
Query:  698 VGVAPARGAGTEKIWCKLCVKEVRRSAMRMHVGGHILKE---------KALQVS-TVCGFCG--GVGCRTTIRASAGKAADVVHSTCSSAPRKDGREEAVQLSLKSARAGSDTSPCTNIVLKCIFCPQE-------TFIWKYGMVDHVTRCH 1096
            +G    + +G + + C  C  + + SA+R HVG HIL+            L++    CG+CG    GC+T +    GK    V S C             ++   +A   SD  PCTN+ + C  C +        T  WKY ++ H+   H
Sbjct:  104 LGAYSEKRSGDDVVHCHCCGMQSKLSALRNHVGQHILRAIRDVPDDLLPGLRIGPNPCGWCGRHASGCQTQLVVPPGKTTYRVLSNC--------EYHYERMKYSAAAKSSDNQPCTNVPVPCPICARNNPNHTHLTTFWKYNLLYHMLSHH 247
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1757.4948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE1.340e-4361.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.400e-3763.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI1.330e-1952.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6RP41_COPC74.520e-526.97Uncharacterized protein n=1 Tax=Coprinopsis cinere... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1757contigL-elsbetiae_contig1757:9..1597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1408
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1757.4948.1prot_L-elsbetiae_contig1757.4948.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1757 911..1597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.5570343-UTR-L-elsbetiae_contig1757:8..5991622815731.5570343-UTR-L-elsbetiae_contig1757:8..599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 9..599 -
1691683066.2481713-UTR-L-elsbetiae_contig1757:8..5991691683066.2481713-UTR-L-elsbetiae_contig1757:8..599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 9..599 -
1622815731.5688553-UTR-L-elsbetiae_contig1757:780..9101622815731.5688553-UTR-L-elsbetiae_contig1757:780..910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 781..910 -
1691683066.2646704-UTR-L-elsbetiae_contig1757:780..9101691683066.2646704-UTR-L-elsbetiae_contig1757:780..910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 781..910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.578292-CDS-L-elsbetiae_contig1757:910..15971622815731.578292-CDS-L-elsbetiae_contig1757:910..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 911..1597 -
1691683066.2743523-CDS-L-elsbetiae_contig1757:910..15971691683066.2743523-CDS-L-elsbetiae_contig1757:910..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 911..1597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1757.4948.1

>prot_L-elsbetiae_contig1757.4948.1 ID=prot_L-elsbetiae_contig1757.4948.1|Name=mRNA_L-elsbetiae_contig1757.4948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
RVKRVQGPTATPSGVAALPEVGSGDTEGAGIANTDARGLCVGDPFAMMVA
MGRGQYTLGLFCCTVAPSEGTRVGSGAVVKGKLMKLKQTTRALEAVEGAS
TSGAVSAAHSAPVGDSWDHWGDLGMHKGELSCKVRLVLPLDPDIVVEPAV
VEETVTRTAPGEGPATEGSAHVVERTLFRFTRADLVAVKATLVEEFGALK
AWSRRKPASAYCGRRRKPASDSRRPRPC*
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mRNA from alignment at L-elsbetiae_contig1757:9..1597-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1757.4948.1 ID=mRNA_L-elsbetiae_contig1757.4948.1|Name=mRNA_L-elsbetiae_contig1757.4948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1589bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:9..1597- (Laminarionema elsbetiae ELsaHSoW15)
CGCGTCAAGCGCGTGCAAGGCCCTACGGCGACACCATCGGGCGTGGCAGC
CTTGCCTGAGGTGGGAAGTGGGGACACAGAAGGGGCTGGGATTGCCAACA
CGGATGCGCGTGGACTTTGTGTTGGAGACCCGTTCGCGATGATGGTTGCG
ATGGGCCGAGGCCAGTACACCCTTGGCCTGTTCTGTTGCACTGTAGCACC
AAGCGAGGGGACCCGGGTGGGTAGTGGAGCGGTTGTCAAGGGGAAGTTGA
TGAAGCTCAAGCAAACCACGCGTGCGCTGGAGGCGGTCGAAGGAGCTTCC
ACGTCAGGCGCCGTCTCAGCGGCACACAGTGCGCCTGTTGGGGACTCGTG
GGACCACTGGGGAGACCTGGGAATGCACAAAGGGGAATTATCGTGCAAGG
TTCGCCTGGTGTTGCCGTTAGACCCGGATATTGTCGTGGAGCCTGCCGTG
GTAGAGGAGACCGTGACACGCACGGCCCCCGGCGAAGGGCCGGCGACCGA
AGGTTCGGCGCACGTCGTGGAGCGCACCTTGTTTCGTTTCACTCGTGCGG
ACCTCGTCGCCGTGAAGGCGACCCTCGTGGAAGAGTTCGGCGCTCTCAAG
GCTTGGAGCCGACGCAAACCCGCTTCAGCGTATTGCGGGCGCCGACGCAA
ACCCGCTTCCGATTCACGAAGACCTCGTCCATGTTGAGGCTGACAGAGTG
GGTGTGGCGCCGGCCAGGGGGGCGGGTACGGAGAAGATCTGGTGCAAGCT
GTGCGTTAAAGAGGTTAGACGATCGGCGATGAGGATGCACGTTGGCGGGC
ACATTCTGAAGGAAAAGGTGCGTGTCGCAAGGTAGTTTTTTGGTTGTTGA
GAAGGAGAAAGCAGACATTAGAGATAAAGAGAACTTTGGCGGTGCCTGGT
TGCATGCATGTCCGCCCTTGGTCTGACTCTACAAGAACTGTTTCAAGCGC
AAGAGGCGCAACCTCACCAGCCTTGCATCCTCCCTTCTCCCATCGCAGGC
TCTGCAGGTGAGCACTGTTTGCGGCTTCTGCGGTGGCGTCGGATGTCGTA
CGACCATCAGGGCTTCAGCAGGCAAGGCCGCGGACGTCGTGCACTCAACC
TGTTCGTCCGCTCCCCGGAAGGACGGGCGTGAAGAGGCAGTTCAGCTTAG
CCTGAAAAGTGCGAGGGCGGGCTCGGACACGTCACCATGCACCAACATCG
TCCTGAAGTGCATCTTCTGCCCCCAGGAGACGTTCATATGGAAGTATGGC
ATGGTTGATCACGTCACCAGATGCCACCCTACGGACACAGCACTTGAGGC
CGGCACGGAGAGAGCAACTATCTTCAAACAGGGCTACACTGTCTCTGAGA
GCGAGAAGCGCAAGGTGCTGACCAAGGTCAAAATCGGGGCGCCACGTTCT
CGTCGCGACAACAACATTCTCCCCTCTGGCGTACGCAGACGCGTGTCGGG
GAACGGTGGACCGGGAGACGGTACAACGGGCGCCCGGGCCTCAGACGAAG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAGGGAGCGCAGGGG
GGGGAGGATGAGAAGGAAGAGAAGGAAGAGGAAGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1757:9..1597-

>mRNA_L-elsbetiae_contig1757.4948.1 ID=mRNA_L-elsbetiae_contig1757.4948.1|Name=mRNA_L-elsbetiae_contig1757.4948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:9..1597- (Laminarionema elsbetiae ELsaHSoW15)
CGCGTCAAGCGCGTGCAAGGCCCTACGGCGACACCATCGGGCGTGGCAGC
CTTGCCTGAGGTGGGAAGTGGGGACACAGAAGGGGCTGGGATTGCCAACA
CGGATGCGCGTGGACTTTGTGTTGGAGACCCGTTCGCGATGATGGTTGCG
ATGGGCCGAGGCCAGTACACCCTTGGCCTGTTCTGTTGCACTGTAGCACC
AAGCGAGGGGACCCGGGTGGGTAGTGGAGCGGTTGTCAAGGGGAAGTTGA
TGAAGCTCAAGCAAACCACGCGTGCGCTGGAGGCGGTCGAAGGAGCTTCC
ACGTCAGGCGCCGTCTCAGCGGCACACAGTGCGCCTGTTGGGGACTCGTG
GGACCACTGGGGAGACCTGGGAATGCACAAAGGGGAATTATCGTGCAAGG
TTCGCCTGGTGTTGCCGTTAGACCCGGATATTGTCGTGGAGCCTGCCGTG
GTAGAGGAGACCGTGACACGCACGGCCCCCGGCGAAGGGCCGGCGACCGA
AGGTTCGGCGCACGTCGTGGAGCGCACCTTGTTTCGTTTCACTCGTGCGG
ACCTCGTCGCCGTGAAGGCGACCCTCGTGGAAGAGTTCGGCGCTCTCAAG
GCTTGGAGCCGACGCAAACCCGCTTCAGCGTATTGCGGGCGCCGACGCAA
ACCCGCTTCCGATTCACGAAGACCTCGTCCATGTTGACGCGTCAAGCGCG
TGCAAGGCCCTACGGCGACACCATCGGGCGTGGCAGCCTTGCCTGAGGTG
GGAAGTGGGGACACAGAAGGGGCTGGGATTGCCAACACGGATGCGCGTGG
ACTTTGTGTTGGAGACCCGTTCGCGATGATGGTTGCGATGGGCCGAGGCC
AGTACACCCTTGGCCTGTTCTGTTGCACTGTAGCACCAAGCGAGGGGACC
CGGGTGGGTAGTGGAGCGGTTGTCAAGGGGAAGTTGATGAAGCTCAAGCA
AACCACGCGTGCGCTGGAGGCGGTCGAAGGAGCTTCCACGTCAGGCGCCG
TCTCAGCGGCACACAGTGCGCCTGTTGGGGACTCGTGGGACCACTGGGGA
GACCTGGGAATGCACAAAGGGGAATTATCGTGCAAGGTTCGCCTGGTGTT
GCCGTTAGACCCGGATATTGTCGTGGAGCCTGCCGTGGTAGAGGAGACCG
TGACACGCACGGCCCCCGGCGAAGGGCCGGCGACCGAAGGTTCGGCGCAC
GTCGTGGAGCGCACCTTGTTTCGTTTCACTCGTGCGGACCTCGTCGCCGT
GAAGGCGACCCTCGTGGAAGAGTTCGGCGCTCTCAAGGCTTGGAGCCGAC
GCAAACCCGCTTCAGCGTATTGCGGGCGCCGACGCAAACCCGCTTCCGAT
TCACGAAGACCTCGTCCATGTTGA
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