mRNA_L-elsbetiae_contig17461.4905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE) HSP 1 Score: 243 bits (621), Expect = 9.820e-76 Identity = 154/294 (52.38%), Postives = 187/294 (63.61%), Query Frame = 1 Query: 43 MASRGNMEALHLETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANY---DEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEFLAQPAGHQSDSSA-EASTHQPGDGKEGSVVGS-ARPCNGKIPLDEDGARFCMEWLWALSRTGRFAVNILFLEEKEKLELACLFDLITAAFQENGDEGTGRVHSLRKAYAV 909 MASR LHLETS LHLELSAALK + D ++ H+ + + +V A+ RKEMEMLSD KRGWQGR GGV P T +G GR+K R T++S T + GGAKAG P+RAP+D++QFQRDWRRRCRT+ RR+YLR++ P LFRVEMEPD+LGQV+S++C EF QP + + A + + + G G GS A NG DE GAR C+EWL ALSRTGRFAVNILFL + EK LA FDL TA F GDE + SLRKAYAV Sbjct: 1 MASRQGDGTLHLETSALHLELSAALKARGCEPEEDGRDEKTSHSYGSKLRRIQAHGLVRSAKPCHGVRKEMEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRGGAKAG-PLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVF---GDE---EISSLRKAYAV 287
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI) HSP 1 Score: 228 bits (581), Expect = 1.230e-70 Identity = 133/231 (57.58%), Postives = 158/231 (68.40%), Query Frame = 1 Query: 244 MEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEF--------LAQPAGHQSDSSAEASTHQPGDGKEGSVVGSA-RPCNGKIPLDEDGARFCMEWLWALSRTGRFAVNILFLEEKEKLELACLFDLITAAFQENGDEGTGRVHSLRKAYAV 909 MEMLS KRGWQGR GGV P TK +GS+GR+K R T++S T I GGAKAG P+RAP+D++QFQRDWRRRC T+ RR+YLR+I P + LFRVEMEPD+LGQVLS++C EF A PA +++ + A T G GSA NG D+ GARFC+EWLWALSRTGRFAVNILFL +KEK ELA FDLI+A GDE + SLRKAYAV Sbjct: 1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQRSVDTAISGGAKAG-PLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFPLHPQRLDTAMPATPENEERSGAPTR-------GDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVL---GDEDDEEISSLRKAYAV 220
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK) HSP 1 Score: 117 bits (294), Expect = 2.380e-28 Identity = 69/167 (41.32%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 76 LETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQG-RSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLI 573 L T KL EL L++D + ++TD+MKKRAIH A YDEFR+MV CA PVTRKE+E LS +GWQ R+ +P T +AR +K+ +I KA + P++ +F+RDWRR+C TD + +YLR++ P +L LF +++ +LGQ+L + Sbjct: 12 LNTKKLQKELIQGLEDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGWQNSRTQSGLPGTS---------SARAKKKTGQGEI----KASKKLEVPKNSVEFERDWRRKCNTDLKKIKYLRLVGPRRLAALFAGDLDAALLGQLLGAL 165
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.240e-27 Identity = 89/258 (34.50%), Postives = 125/258 (48.45%), Query Frame = 1 Query: 100 ELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKK--TARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEFLAQPAGHQSDSSAEASTHQPGDGKEGSVVGSARPCNGKIPLDEDGARFCMEWLWALSRTGRFAVNILFLEEKEKLELACLFDLITAAFQENGDE 867 ELS AL+ED TDE KKR I TAA+YDEFRH+V+CA L ++R E+E LS +K+GW PA++ R++ ARG S PV+ P +F+RDW+R CR+ D R YL + +PD LP LF +M+ ++ +V+S C F A AG ++D P D F + L AL+ TGRF +N FL ++ + D A+ Q+ DE Sbjct: 53 ELSMALEEDRKHHVTDEAKKRHITTAASYDEFRHLVACADLKRLSRSEIESLSQKKKGW----ARPAPASQAGARPSRRRGNKARGAAVPISQF---------PVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSEVISA-CAHF-ASAAGSEAD-----------------------------PSDLSRGDFVLATLNALANTGRFTLNKSFLSAEDAQNIRTCCDCARASGQDTADE 266
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.230e-22 Identity = 87/287 (30.31%), Postives = 142/287 (49.48%), Query Frame = 1 Query: 76 LETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEFLAQPAGHQSDSSAEASTHQ-----------PGDGKEGSVVGSARPCNGKIPLDEDGARFCMEWLWALSRTGRFAVNILFLEEKEKLELACLFDLITAAFQENGDEGTGRVHSLRKAY 903 L T+ + EL+ +LKED + TDE KK+ I A YDEFRHMV+ A V+R EME L +GW+ ++ + KK+ + R++T +G++K P P QF+RDWRR C+ A+ YLR+ + + +F+ E++ +LG++L+ + G AG ++ + + + E S +AR L+E F + L AL +TGRF++N+ FLE+K+K +A + + + E G E G + + R Y Sbjct: 77 LNTTMIQKELADSLKEDRNYHNTDEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQKTK-LTTGAKKSARAKRQQT-KGSKKLSQEF---------PTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAAR-------LEEP--LFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWLG----ELGVEDAGALEATRALY 339
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A024UPP0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPP0_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 3.900e-20 Identity = 66/174 (37.93%), Postives = 99/174 (56.90%), Query Frame = 1 Query: 79 ETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRG----WQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEFL 588 +T+ L EL+ AL+ED K TDEMKKRAIHTAA+YD+FR+ V CA L PV+ KE++ LS +R +Q ++ VV TK S + G A P P +F R WRR C T DA+ +YL++ +P++L LF E++ D++ Q+++ + +F+ Sbjct: 10 DTAALQKELALALEEDRKYKLTDEMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERKRNRMYQAKTA-VVDTTK------------------SKTLVGELDAAVP---PATSVEFLRTWRRSCVTQDAKYKYLQVTTPERLQKLFHAELDSDLMLQIVACLNAQFV 161
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: T0S406_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S406_SAPDV) HSP 1 Score: 94.4 bits (233), Expect = 5.700e-19 Identity = 63/166 (37.95%), Postives = 90/166 (54.22%), Query Frame = 1 Query: 79 ETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYS-QFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLI 573 +T+ L EL+ AL ED K TDEMKKRAIHTAA+YDEF++ V CA L PV+ KE++ LS +R ++ +KS S A G AP S +FQR W+R C TD A+ +YL +P +L LF+ E++ D+ G +++ + Sbjct: 10 DTASLQKELAQALDEDRKYKATDEMKKRAIHTAASYDEFKNFVLCADLKPVSSKELQNLSKSER---------------------QRNRLYHKKSSSIKATRPATLTGADDAPPKSSVEFQRTWQRSCSTDAAKLQYLERTTPARLAKLFQAEIDADLFGSIVATL 154
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.630e-19 Identity = 78/264 (29.55%), Postives = 128/264 (48.48%), Query Frame = 1 Query: 145 DEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEFLAQPAGHQSDSSAEASTHQ-----------PGDGKEGSVVGSARPCNGKIPLDEDGARFCMEWLWALSRTGRFAVNILFLEEKEKLELACLFDLITAAFQENGDEGTGRVHSLRKAY 903 DE KK+ I A YDEFRHMV+ A V+R EME L +GW+ ++ + KK+ + R++T +G++K P P QF+RDWRR C+ A+ YLR+ + + +F+ E++ +LG++L+ + G AG ++ + + + E S +AR L+E F + L AL +TGRF++N+ FLE+K+K +A + + + E G E G + + R Y Sbjct: 5 DEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQKTK-LTTGAKKSARAKRQQT-KGSKKLSQEF---------PTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAAR-------LEEP--LFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWLG----ELGVEDAGALEATRALY 244
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.360e-18 Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 1 Query: 79 ETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLS--DQKRG--WQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLICGEF 585 +T+ L EL+ AL+ED KKTDEMKKRAIHTAA+YDEFR+ V CA L PV+ K+++ LS D++R +Q + + A+ R KT +K+ D G F R WRR C T + +Y+R+ +P + +F E+E D++ Q++ + EF Sbjct: 10 DTAALQKELAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDRRRNRMYQTKPNNPLDAS-------RAKTLSACKKTTPPDTSG---------------DFLRTWRRSCPTHRDKYQYMRLTTPARFRKMFASELEADLMIQLIECMSEEF 160
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Match: A0A1V9Z2T7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2T7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.730e-18 Identity = 62/165 (37.58%), Postives = 89/165 (53.94%), Query Frame = 1 Query: 79 ETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEFRHMVSCAQLTPVTRKEMEMLSDQKRGWQGRSGGVVPATKKTGSSGRKKTARGTRKSDSTDIGGGAKAGGPVRAPRDYSQFQRDWRRRCRTDDARREYLRMISPDKLPVLFRVEMEPDILGQVLSLI 573 +T+ L EL AL+ED K TDEMKKRAIHTA++YDEF++ V CA L PV+ KE++ LS +R K +S R T T +DS R P+ +F R W+R C +D + EYL + SP +L LF+ EM+ D+ +++ + Sbjct: 10 DTASLQKELVQALEEDRKYKATDEMKKRAIHTASSYDEFKNFVLCADLKPVSSKELQNLSKSERQRN-------RLYHKKAASVRATTGTLTGSNDSR------------RPPKSSVEFLRTWKRSCTSDAGKYEYLVLTSPARLGKLFQAEMDADLFADIVACL 155 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17461.4905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17461.4905.1 >prot_L-elsbetiae_contig17461.4905.1 ID=prot_L-elsbetiae_contig17461.4905.1|Name=mRNA_L-elsbetiae_contig17461.4905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp MASRGNMEALHLETSKLHLELSAALKEDVSRKKTDEMKKRAIHTAANYDEback to top mRNA from alignment at L-elsbetiae_contig17461:472..3206+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17461.4905.1 ID=mRNA_L-elsbetiae_contig17461.4905.1|Name=mRNA_L-elsbetiae_contig17461.4905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2735bp|location=Sequence derived from alignment at L-elsbetiae_contig17461:472..3206+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17461:472..3206+ >mRNA_L-elsbetiae_contig17461.4905.1 ID=mRNA_L-elsbetiae_contig17461.4905.1|Name=mRNA_L-elsbetiae_contig17461.4905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig17461:472..3206+ (Laminarionema elsbetiae ELsaHSoW15)back to top |