mRNA_L-elsbetiae_contig1740.4881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1740.4881.1
Unique NamemRNA_L-elsbetiae_contig1740.4881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 632 bits (1630), Expect = 9.040e-211
Identity = 457/974 (46.92%), Postives = 521/974 (53.49%), Query Frame = 1 
Query:    4 DAFAVLLSQSQAPASKRKKQAASCSSKTXXXXXXXXXSPLASAPPSASQ--GSRFVECPLCGKSVHSSLAQAHVERCKGDVSPPS-------PPTAXXXXXXXXXXXKEEAERG----------------SWGERTAEGET--GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMVRSVNTNNSS--SARPATAVTANAFSTLMAASALSNFREEMYLWAHEDGTFSWGWGAVGNPLPPXXXXXXXXXXXXXAAGGSSRRASWSCQVATKGPDGRKAGACDLWTNLPPA----------------------TPEGGSENAGFMAARPGQSLSRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRDSTDSFRRRRFR-------NNHNHQIAGACSPGXXXXXXXXXXXXXXXXXXXXXXXLVATKSFDAEEFPVPHPKSLLV--SSGGR-------------------DDADGCADRNAAADAAVANIRRALLMRVSYGGMLWDQALLKGACLAWGERCGQYHDCSLCGAARSS------ASSPPRALDGNASGSG-SC-SGSAASLSGENVPGAGEGVASTTAPLSTQQQPPDPPRWPE---GLSRPPGVSASDFERGSGDVGVLPFSYTHESVLTALQGDGWTAFLAAAHGATGMPPALRSQLMAHVARKGSGGAG------RGEEGAASHHAVQREAGRATPTTAKDASMPSSRLGPILREADAILSGVDFHCSGVLDELLRSTAVSARVGEAIRRRRNXXXXXXXXXXXGIYSDEEVVGVRQAAKQAMWACSGALNVRRLRVTFSSKGGEETRQDDGRNRRGESKAAGCCGDCWSSPGLLEELPGVRVVAGDGGVAVLGDGGGASSPDVNTRVWSAISSDVLGWTRRFVKGRLARG 2637
            DAFA L SQ +A ASK+K+  +S  SK           P +S  PSA+   GSRFV+CPLCGKSVHSSLAQ HVERC G    P        PP A             + E G                S  ER +       A                                         S  R   T+ SS  +   AT    +AF+TLMAASAL+NFREEMYL AH+DGT SWGWG  GNPLPP                 SSR   W CQVATKGPDGRKAG CD+WTNL PA                      TP GG +NAG  AARP QSLSRLPVAV+KSMLQKN+RRGRAEAAVRCALELAL+SW DAIRRVLVI VEDSLLHPAAPLLTWLMVATSKGYRPP  LLE FLCVVHETAACPVRDSTDS  R           +N +H+ AG                             V  K FDA+EFPVPHPKSLLV  S G                                    AVANIRRALLMRVSYGGM +DQALLKG CLAWGERCG  + C   GA   S      A++   ++DG+  GS  SC  G  AS SGE    A    ++   P++ Q+QPP PP         +RP    A    R      + PF Y HESV +AL+G+GWTAFL AAH  TGMPPALR+ L+AHV   GSG AG      R +                   TA   S     LGPI+READAILSGVDFHCSGVLDELLRSTAV+ARVG+AI   R               S+ ++VGVRQAAKQAMWACS  +N RRLRV F  + GEE  + +         A G CG C SSPG LEE  G+  V  DG    +G  GG+SS  ++ RVW+A+SSDV GWT +FV+GRL+RG
Sbjct:    4 DAFASLFSQPRA-ASKKKQAFSSTRSKHVQSSAKR---PRSSPSPSAASPSGSRFVKCPLCGKSVHSSLAQTHVERCPGSGEEPISSAAKKVPPAAASAPAHTPGVSSPQQEAGGKADACVATSLVRRERSLAERVSSIPVVEAAAGPDDAKCGSIGDSGREKAGAAGTPPPSNSNGDDFTGDGRRSRGRRKTTSCSSGEAGDSATDQEDDAFATLMAASALTNFREEMYLLAHQDGTLSWGWGPAGNPLPPIPAHFDTA---------SSR---WRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPVLPAAGRGGDRVTRGVTPAGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXXXTCVSNGHHREAGFSISSAARTDQDPERQQLP----------VEKKCFDADEFPVPHPKSLLVPASQGAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCLEGEKASTSGEGTIFAKGSGSTDNKPVTPQRQPPSPPHVDHKTFSFARPRDQDAGKANREDLVDILQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHVVGVGSGRAGERTGNMRQKSXXXXXXXXXXXXXXXXRLTAASTSTHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNGVGDAES---SELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETE--------VAEGNCGCCLSSPGYLEETEGIVGVGEDGVSLPVGIAGGSSS-GMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 5.110e-121
Identity = 269/615 (43.74%), Postives = 316/615 (51.38%), Query Frame = 1 
Query:  823 TPEGGSENAGFMAARPGQSLSRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRDSTDSFRRRRFRNNHNHQIAGACSPGXXXXXXXXXXXXXXXXXXXXXXXLVATKSFDAEEFPVPHPKSLLVSSGGRDDADGCADRNAAADAAVANIRRALLMRVSYGGMLWDQALLKGACLAWGERCGQYHDCSLCGAARSSASSPPRALDGNASGSGSCSGSAASLSGENVPGAGEGVASTTAPLSTQQQPPDPPRWPEG---LSRPPGVSASDFERGSGDVGVLPFSYTHESVLTALQGDGWTAFLAAAHGATGMPPALRSQLMAHVARKGSGGAGR--GEEGAASHHAVQREAGRATP-----TTAKDASMPSSRLGPILREADAILSGVDFHCSGVLDELLRSTAVSARVGEAIRRRRNXXXXXXXXXXXGIYSDEEVVGVRQAAKQAMWACSGALNVRRLRVTFSSKGGEETRQDDGRNRRGESKAAGCCGDCWSSPGLLEELPGVRVVAGDGGVAVLGDGGGASSPDVNTRVWSAISSDVLGWTRRFVKGRLARG 2637
            TP GG +NAG  AARP QSLSRLPVAV+KSMLQKN+RRGRAEAAVRCALELAL+SW DAIRRVLVI+VEDSLLHPAAPLLTWLMVATSKGYRPP  LLE FLCVVHETAACPV   ++S                                                              S L                                                     GE+                                      AS SGE    A    ++   P+++Q+QPP PPR+      L+RP    A    R      + PF Y HESVL+AL+G+GWTAFL AAH  TGMPPALR+ ++AHV   GSG AG   G+    S                  +TA   + P +RLGPI+READAILSGVDFHCSGVLDELLRSTAV+ARVG+AI   R               S+ E+VGVRQAAKQAMWACS  +N RRLRV F  + GEE+ + +         A G  G C SSPG LEE   V  V  DG    +G+GGG+SS  ++ RVW+A+SSDV GWT +FV+GRL+RG
Sbjct:   23 TPTGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNS--------------------------------------------------------------SFLE----------------------------------------------------GEK--------------------------------------ASTSGEGTVLAKGSGSTDKTPVTSQRQPPSPPRFDHKTFPLARPRDQDAGYANREDLVDILQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHVVGVGSGRAGERAGDMKQKSXXXXXXXXXXXXXXXXXMSTAASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGDSAS---SELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETE--------VAEGNGGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSS-GIDARVWAAMSSDVSGWTTKFVRGRLSRG 473
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A835Z044_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z044_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.500e-23
Identity = 79/208 (37.98%), Postives = 98/208 (47.12%), Query Frame = 1 
Query:  547 NAFSTLMAASALSNFREEMYLWAHEDGTFSWGWGAVGNPLPPXXXXXXXXXXXXXAAGGSSRRASWSCQVATKGPDGRKAGACDLWTNLPPAT-PEGGSENAGFMAARPGQSLSRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRD 1167
            NAF  LM + A S F EE++L A   G   WGWG                              +W C V+ K           +WTN+P A  P        F AA             + S LQKNVRRG  EAAVRCA EL  +S+    RR+ +I+VED +LHPA PL+ W MVATSKG+ P   L+   L VVHE +AC  +D
Sbjct:   17 NAFDVLMPSRADSRFSEELWLVARR-GYLEWGWGTFKESKDIRVTQ------------------TWQCNVSVK------TNEMKVWTNIPSAAVPLKVVNETSFNAAH------------LMSFLQKNVRRGYCEAAVRCAAELMSKSFNQFARRLCIIMVEDVILHPALPLIVWCMVATSKGFVPSPLLVAACLGVVHEISACATKD 187
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.320e-19
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  928 VRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAAC 1155
            +RRGR E AVRCA ELA++S+ D +RR+ +I +EDS+LHPA PLLTWLM A  KGY PP   +   L VVHE + C
Sbjct:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 76
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A7S2V1T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.910e-16
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  940 RAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRD 1167
            R E+AVR ALEL  +SW D IRR+++I++ED +LHPA PLL WL++A S+G+ P S  ++  L +VHE   CP +D
Sbjct:    9 RGESAVRVALELMAKSWTDFIRRIVIIMIEDCMLHPATPLLVWLLLADSRGWIPTSAQVQACLKIVHELTLCPWKD 84
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.420e-16
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 1 
Query:  739 SWSCQVATKGPDGRKAGACDLWTNLPPATPEGGSENAGFMAARPGQSL----SRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRDSTDSFRRRRFRNNHNHQ 1218
            +WS  V  +G       A +L  +   + P  GS  +     +  Q L    SRL V V+KS+LQK++RR +   +VR A ELA +S GD +RR+ +I++EDS LHP+ P L WLM+A SK Y  P  LL+  L +V E A+C  +DS     +++   NHN +
Sbjct:   51 AWSATVQVRGKKETATPAIELLISS--SIPSFGSNASTPQIQQERQRLVRKHSRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDSLKVHEQQKI--NHNDE 210
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.740e-16
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:  883 SRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRD 1167
            SRL + V+KS+LQK++RR R   +VR A+EL  +S+GD IRR+ +I++EDS+LHP  P L W MV+ SKG+ P   ++E  L +V++ A+CP  D
Sbjct:   67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCPWHD 161
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.170e-15
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:  874 QSLSRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRDSTD 1176
            Q  SRL ++ +KS LQK++RR     AVR A+ELA +SW D IRR+ +I++EDS LHP   LL WLM+A SKGY P   L+   L +V E A+CP +D  +
Sbjct:  269 QRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCPWQDGIE 369
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.890e-15
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:  877 SLSRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSK 1089
            S SRL V V+KSMLQK VRR RA  AVR A+ELA +SW D IRR+ VI+VEDS+LHP  PL+ WLM+A SK
Sbjct:   30 SPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
[Close]
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Match: B8C1K7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1K7_THAPS)

HSP 1 Score: 89.7 bits (221), Expect = 8.530e-15
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  883 SRLPVAVIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPAAPLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRD 1167
            SRL VA +KS LQK++RR     AVR ALEL  +SW   IRR+ +I +EDS LHP   LL WLMVA SK Y PP+ L+   + +V E A+CP +D
Sbjct:  326 SRLSVAQLKSCLQKSIRRRAPLPAVRVALELVDKSWEALIRRLPIICLEDSFLHPDFALLVWLMVADSKNYAPPTSLIVRVMQIVFEMASCPRQD 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1740.4881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW62_9PHAE9.040e-21146.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4U0_ECTSI5.110e-12143.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z044_9STRA4.500e-2337.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBZ5_9STRA6.320e-1957.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1T4_9STRA5.910e-1651.32Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A448ZPZ8_9STRA6.420e-1638.41Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0CK82_9STRA8.740e-1648.42Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U3V913_9STRA4.170e-1549.50Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1BMU8_9STRA4.890e-1566.20Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
B8C1K7_THAPS8.530e-1552.63Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1740contigL-elsbetiae_contig1740:18506..22265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.5
Seed ortholog evalue1.7e-104
Seed eggNOG ortholog2880.D7G4U0
Hectar predicted targeting categoryother localisation
EggNOG OGs2DBB4@1,2S5HM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000370.1
Exons4
Model size2640
Cds size2640
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1740.4881.1prot_L-elsbetiae_contig1740.4881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1740 18506..22265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.941623-CDS-L-elsbetiae_contig1740:18505..189121622815724.941623-CDS-L-elsbetiae_contig1740:18505..18912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 18506..18912 -
1691683061.7506096-CDS-L-elsbetiae_contig1740:18505..189121691683061.7506096-CDS-L-elsbetiae_contig1740:18505..18912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 18506..18912 -
1622815724.9548867-CDS-L-elsbetiae_contig1740:18984..202101622815724.9548867-CDS-L-elsbetiae_contig1740:18984..20210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 18985..20210 -
1691683061.7629294-CDS-L-elsbetiae_contig1740:18984..202101691683061.7629294-CDS-L-elsbetiae_contig1740:18984..20210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 18985..20210 -
1622815724.9668999-CDS-L-elsbetiae_contig1740:20884..210421622815724.9668999-CDS-L-elsbetiae_contig1740:20884..21042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 20885..21042 -
1691683061.7715285-CDS-L-elsbetiae_contig1740:20884..210421691683061.7715285-CDS-L-elsbetiae_contig1740:20884..21042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 20885..21042 -
1622815724.9794357-CDS-L-elsbetiae_contig1740:21416..222651622815724.9794357-CDS-L-elsbetiae_contig1740:21416..22265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 21417..22265 -
1691683061.7810242-CDS-L-elsbetiae_contig1740:21416..222651691683061.7810242-CDS-L-elsbetiae_contig1740:21416..22265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 21417..22265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1740.4881.1

>prot_L-elsbetiae_contig1740.4881.1 ID=prot_L-elsbetiae_contig1740.4881.1|Name=mRNA_L-elsbetiae_contig1740.4881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=880bp
MDAFAVLLSQSQAPASKRKKQAASCSSKTPAGKRARSSSPLASAPPSASQ
GSRFVECPLCGKSVHSSLAQAHVERCKGDVSPPSPPTAVAACSSAASQRK
EEAERGSWGERTAEGETGAAAAAAAAAAAAAAAAQTTAAAAAAKPKPALP
AASSRTAPPPSMVRSVNTNNSSSARPATAVTANAFSTLMAASALSNFREE
MYLWAHEDGTFSWGWGAVGNPLPPPPPPSTPAPSTPAAAGGSSRRASWSC
QVATKGPDGRKAGACDLWTNLPPATPEGGSENAGFMAARPGQSLSRLPVA
VIKSMLQKNVRRGRAEAAVRCALELALRSWGDAIRRVLVIVVEDSLLHPA
APLLTWLMVATSKGYRPPSCLLEVFLCVVHETAACPVRDSTDSFRRRRFR
NNHNHQIAGACSPGAATTYKQQQQQQQQQQQQQQQQQLVATKSFDAEEFP
VPHPKSLLVSSGGRDDADGCADRNAAADAAVANIRRALLMRVSYGGMLWD
QALLKGACLAWGERCGQYHDCSLCGAARSSASSPPRALDGNASGSGSCSG
SAASLSGENVPGAGEGVASTTAPLSTQQQPPDPPRWPEGLSRPPGVSASD
FERGSGDVGVLPFSYTHESVLTALQGDGWTAFLAAAHGATGMPPALRSQL
MAHVARKGSGGAGRGEEGAASHHAVQREAGRATPTTAKDASMPSSRLGPI
LREADAILSGVDFHCSGVLDELLRSTAVSARVGEAIRRRRNKAGTTSSTA
GGGIYSDEEVVGVRQAAKQAMWACSGALNVRRLRVTFSSKGGEETRQDDG
RNRRGESKAAGCCGDCWSSPGLLEELPGVRVVAGDGGVAVLGDGGGASSP
DVNTRVWSAISSDVLGWTRRFVKGRLARG*
back to top

mRNA from alignment at L-elsbetiae_contig1740:18506..22265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1740.4881.1 ID=mRNA_L-elsbetiae_contig1740.4881.1|Name=mRNA_L-elsbetiae_contig1740.4881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3760bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:18506..22265- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCCTTTGCAGTGCTGCTCTCCCAATCTCAAGCGCCAGCCAGCAA
GAGGAAGAAGCAGGCTGCTTCCTGTTCCAGCAAGACACCAGCAGGAAAAC
GCGCTCGATCATCATCGCCGTTGGCATCCGCACCCCCTTCAGCATCTCAG
GGGTCTCGTTTCGTGGAGTGTCCCCTCTGCGGGAAGTCCGTACACTCGTC
TCTGGCTCAGGCGCACGTGGAGCGATGTAAAGGGGACGTTTCGCCGCCGT
CTCCACCCACCGCTGTCGCAGCATGTTCTAGCGCCGCCTCGCAACGGAAA
GAAGAGGCTGAAAGGGGAAGCTGGGGTGAACGGACGGCGGAAGGAGAAAC
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CACAGACAACAGCAGCAGCAGCAGCAGCAAAGCCGAAACCGGCGCTGCCG
GCCGCATCTTCCCGTACCGCGCCACCGCCGTCAATGGTACGCAGCGTCAA
CACCAACAACAGCAGCAGCGCCCGCCCGGCCACGGCCGTAACAGCAAATG
CCTTCTCCACCCTTATGGCTGCCTCCGCCCTCTCCAACTTCCGGGAAGAG
ATGTACCTCTGGGCGCACGAAGACGGCACCTTCTCCTGGGGATGGGGCGC
CGTCGGCAACCCTCTCCCCCCCCCCCCCCCCCCGTCAACCCCTGCTCCGT
CAACCCCTGCTGCCGCCGGCGGTAGCAGCCGCCGCGCAAGCTGGTCTTGC
CAGGTGGCCACCAAAGGACCGGACGGGCGAAAGGCAGGGGCGTGCGATCT
CTGGACCAATCTTCCGCCCGCTACCCCAGAGGGCGGCAGTGAAAACGCGG
TGAGTTCTTTTGATGATGGGGCGCAGCGCAGCGGCGGGAAGGGGAGGCCG
GGTTGCGCGGGGTCTGCGGGAAGGAGCGTGGGTGGCAGAAGAGAGGAAGC
TGGCCTGCTGCGTTTCTATGCATGTAGTTTCTATTATAGTGCTGTAGTTT
ATGGAGCGAGCACGTGGTTCTGCCGCTCCGAGGAGCGGCGAACACCAGCC
CACTCCTCCTTTTTGTACCCTCCGGTCGTACATATCTATTCGGTAACATA
AACATCGTGCGGAATTTGCTGCCGCGTTTGTTTGTAAGTATACTAGACAC
ATGTATTTAGCTCCTTCCTTGTATCATCCTTGCCGCGGCTGGAATGTTTT
CTCCCACCGCCCGGCCACACCAGGGCTTCATGGCTGCGCGGCCGGGGCAG
AGCCTGTCTCGCTTGCCGGTGGCGGTGATCAAGTCCATGCTGCAGAAGAA
CGTCAGGCGTGGGAGAGCGGAGGCGGCCGTCCGGTGCGCGCTGGAGCTCG
CGCTCAGGAGCTGGGGCGACGCCATTCGCCGGTATATATGTATTGTAAAG
CGTTTATTTTTTGTTCATCGGAAGGCTGTTGCACTCCTTCCCCTTACATT
ACCCAAACCATTCGATGTGATAATTGGTTTTAGTTCCCGGCCATATTTTC
TTGTTGGCTTTTGTCTGCCTTGGCCACCCAGCTCCCGAAGCGGCGGGAGA
AGGTCTCGACTTGGGTCTATGTGAGCCCCCGCGCCTGGCACCAGCGCAGC
GTAGCACCGTGTAAGTCGCGAGCCGGGGTGCTGTTGTGGGCAAAGGTCGC
ACCGGCGCGGACGGGGTTAGGGGGGCGGCCCAGGACTGAAAGGGGTACCT
AGTTTTCGTGAATATTCGACCCTTCCTGATTCTCGCTCCGAAATCTAGGC
TCTTTGCATGAATAAGATTGCACATGCATGTATTGTATCCGTTCGGCGAT
ATTGTGGAATAGATGCCCGCCTTTTGTGGCTCGATTCAAGTCGTGAAGCC
TTTTTTTTCAAGCTGCTCCTGGCATTGCTTCTCCCTCTCCCTGTTGCGAG
AGCGTAATTTGTTTGAGAATCGAGGAACAGGCTTGTGCTGAAGACGGAAA
CGTCAGCACTTCTTCCATACGTTCTCACCCCTTGTGTTTGCCAGAATGTT
TCCCTTTACCGCTCCTTGACACTGAGAGCATGCTCCTCCCCATCATCATT
TCCAGGGTGTTGGTGATCGTCGTGGAGGATTCCCTCCTGCACCCGGCGGC
GCCGCTCCTCACCTGGTTGATGGTGGCGACTTCGAAGGGCTACCGGCCGC
CGTCTTGCCTGCTGGAGGTGTTCCTCTGCGTGGTGCACGAAACTGCGGCC
TGTCCTGTGCGGGACTCGACAGATTCCTTCCGCCGCCGGCGCTTTCGTAA
CAACCATAACCATCAAATCGCCGGCGCTTGCTCCCCGGGTGCGGCCACAA
CCTACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCTGGTGGCAACGAAAAGTTTCGATGCCGAGGAGTTCCCGGT
GCCGCACCCCAAAAGTTTACTGGTTTCTTCCGGTGGCCGTGACGATGCTG
ACGGCTGTGCGGACAGGAACGCAGCCGCAGACGCCGCCGTGGCGAACATT
AGGCGTGCCTTGCTCATGCGCGTCTCGTACGGGGGGATGCTATGGGACCA
GGCATTGTTGAAAGGGGCGTGTCTGGCGTGGGGGGAGCGCTGCGGGCAAT
ACCACGACTGCAGCTTGTGTGGTGCCGCTCGCTCTTCTGCTTCGTCCCCT
CCTCGTGCTCTCGACGGTAACGCCAGCGGTAGCGGCAGCTGTAGCGGCAG
CGCGGCTAGTCTCAGTGGCGAAAACGTGCCTGGTGCAGGCGAGGGTGTGG
CGTCGACCACCGCGCCGCTCTCGACGCAGCAGCAGCCCCCAGATCCGCCA
AGGTGGCCCGAAGGTCTTTCAAGGCCCCCGGGCGTTAGCGCTTCTGATTT
CGAGCGCGGCAGCGGCGATGTCGGCGTTCTACCGTTCAGTTACACCCACG
AAAGCGTGCTCACGGCCTTGCAGGGGGATGGATGGACCGCTTTCCTGGCT
GCGGCGCACGGCGCGACGGGTATGCCGCCGGCGCTACGTTCGCAGCTCAT
GGCGCACGTGGCGAGGAAAGGTAGCGGCGGTGCTGGCCGTGGCGAAGAAG
GAGCGGCGAGTCATCACGCGGTGCAACGAGAGGCAGGGAGGGCAACGCCG
ACGACCGCAAAAGACGCCTCGATGCCGTCAAGCCGCCTCGGCCCCATCCT
CCGAGAGGCAGACGCCATCTTGAGCGGCGTAGACTTCCACTGCAGCGGCG
TTCTTGACGAGCTCCTGAGATCCACCGCGGTGTCCGCGCGTGTGGGAGAA
GCGATCCGCCGCCGCCGAAATAAAGCCGGCAGTTTTGGTGCTGGATCGGG
CGCGGTGGTGAGCGGAGAAGTCGGCCAGGAGCACGAGGAGAGCAGTGCGC
GAGCGACAAGCAGTACGGCAGGGGGAGGCATTTATTCCGACGAAGAGGTC
GTCGGCGTCAGGCAGGCCGCCAAACAGGCCATGTGGGCCTGCTCCGGAGC
GCTCAACGTCCGGAGGCTGCGGGTGACGTTCTCCTCGAAAGGGGGAGAGG
AAACGCGCCAGGACGACGGCAGAAATCGACGAGGTGAAAGCAAGGCGGCG
GGCTGCTGCGGCGACTGCTGGTCCAGTCCAGGGCTCCTAGAGGAGTTGCC
CGGGGTCCGGGTGGTAGCGGGCGATGGTGGCGTTGCGGTGCTGGGGGACG
GCGGGGGTGCCTCGTCGCCCGACGTGAACACCAGGGTTTGGTCCGCGATT
TCGTCGGATGTGTTGGGTTGGACGCGGAGGTTCGTAAAGGGGAGGCTTGC
GAGAGGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1740:18506..22265-

>mRNA_L-elsbetiae_contig1740.4881.1 ID=mRNA_L-elsbetiae_contig1740.4881.1|Name=mRNA_L-elsbetiae_contig1740.4881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5280bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:18506..22265- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCCTTTGCAGTGCTGCTCTCCCAATCTCAAGCGCCAGCCAGCAA
GAGGAAGAAGCAGGCTGCTTCCTGTTCCAGCAAGACACCAGCAGGAAAAC
GCGCTCGATCATCATCGCCGTTGGCATCCGCACCCCCTTCAGCATCTCAG
GGGTCTCGTTTCGTGGAGTGTCCCCTCTGCGGGAAGTCCGTACACTCGTC
TCTGGCTCAGGCGCACGTGGAGCGATGTAAAGGGGACGTTTCGCCGCCGT
CTCCACCCACCGCTGTCGCAGCATGTTCTAGCGCCGCCTCGCAACGGAAA
GAAGAGGCTGAAAGGGGAAGCTGGGGTGAACGGACGGCGGAAGGAGAAAC
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CACAGACAACAGCAGCAGCAGCAGCAGCAAAGCCGAAACCGGCGCTGCCG
GCCGCATCTTCCCGTACCGCGCCACCGCCGTCAATGGTACGCAGCGTCAA
CACCAACAACAGCAGCAGCGCCCGCCCGGCCACGGCCGTAACAGCAAATG
CCTTCTCCACCCTTATGGCTGCCTCCGCCCTCTCCAACTTCCGGGAAGAG
ATGTACCTCTGGGCGCACGAAGACGGCACCTTCTCCTGGGGATGGGGCGC
CGTCGGCAACCCTCTCCCCCCCCCCCCCCCCCCGTCAACCCCTGCTCCGT
CAACCCCTGCTGCCGCCGGCGGTAGCAGCCGCCGCGCAAGCTGGTCTTGC
CAGGTGGCCACCAAAGGACCGGACGGGCGAAAGGCAGGGGCGTGCGATCT
CTGGACCAATCTTCCGCCCGCTACCCCAGAGGGCGGCAGTGAAAACGCGA
TGGACGCCTTTGCAGTGCTGCTCTCCCAATCTCAAGCGCCAGCCAGCAAG
AGGAAGAAGCAGGCTGCTTCCTGTTCCAGCAAGACACCAGCAGGAAAACG
CGCTCGATCATCATCGCCGTTGGCATCCGCACCCCCTTCAGCATCTCAGG
GGTCTCGTTTCGTGGAGTGTCCCCTCTGCGGGAAGTCCGTACACTCGTCT
CTGGCTCAGGCGCACGTGGAGCGATGTAAAGGGGACGTTTCGCCGCCGTC
TCCACCCACCGCTGTCGCAGCATGTTCTAGCGCCGCCTCGCAACGGAAAG
AAGAGGCTGAAAGGGGAAGCTGGGGTGAACGGACGGCGGAAGGAGAAACA
GGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ACAGACAACAGCAGCAGCAGCAGCAGCAAAGCCGAAACCGGCGCTGCCGG
CCGCATCTTCCCGTACCGCGCCACCGCCGTCAATGGTACGCAGCGTCAAC
ACCAACAACAGCAGCAGCGCCCGCCCGGCCACGGCCGTAACAGCAAATGC
CTTCTCCACCCTTATGGCTGCCTCCGCCCTCTCCAACTTCCGGGAAGAGA
TGTACCTCTGGGCGCACGAAGACGGCACCTTCTCCTGGGGATGGGGCGCC
GTCGGCAACCCTCTCCCCCCCCCCCCCCCCCCGTCAACCCCTGCTCCGTC
AACCCCTGCTGCCGCCGGCGGTAGCAGCCGCCGCGCAAGCTGGTCTTGCC
AGGTGGCCACCAAAGGACCGGACGGGCGAAAGGCAGGGGCGTGCGATCTC
TGGACCAATCTTCCGCCCGCTACCCCAGAGGGCGGCAGTGAAAACGCGGG
CTTCATGGCTGCGCGGCCGGGGCAGAGCCTGTCTCGCTTGCCGGTGGCGG
TGATCAAGTCCATGCTGCAGAAGAACGTCAGGCGTGGGAGAGCGGAGGCG
GCCGTCCGGTGCGCGCTGGAGCTCGCGCTCAGGAGCTGGGGCGACGCCAT
TCGCCGGGCTTCATGGCTGCGCGGCCGGGGCAGAGCCTGTCTCGCTTGCC
GGTGGCGGTGATCAAGTCCATGCTGCAGAAGAACGTCAGGCGTGGGAGAG
CGGAGGCGGCCGTCCGGTGCGCGCTGGAGCTCGCGCTCAGGAGCTGGGGC
GACGCCATTCGCCGGGTGTTGGTGATCGTCGTGGAGGATTCCCTCCTGCA
CCCGGCGGCGCCGCTCCTCACCTGGTTGATGGTGGCGACTTCGAAGGGCT
ACCGGCCGCCGTCTTGCCTGCTGGAGGTGTTCCTCTGCGTGGTGCACGAA
ACTGCGGCCTGTCCTGTGCGGGACTCGACAGATTCCTTCCGCCGCCGGCG
CTTTCGTAACAACCATAACCATCAAATCGCCGGCGCTTGCTCCCCGGGTG
CGGCCACAACCTACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCTGGTGGCAACGAAAAGTTTCGATGCCGAGGA
GTTCCCGGTGCCGCACCCCAAAAGTTTACTGGTTTCTTCCGGTGGCCGTG
ACGATGCTGACGGCTGTGCGGACAGGAACGCAGCCGCAGACGCCGCCGTG
GCGAACATTAGGCGTGCCTTGCTCATGCGCGTCTCGTACGGGGGGATGCT
ATGGGACCAGGCATTGTTGAAAGGGGCGTGTCTGGCGTGGGGGGAGCGCT
GCGGGCAATACCACGACTGCAGCTTGTGTGGTGCCGCTCGCTCTTCTGCT
TCGTCCCCTCCTCGTGCTCTCGACGGTAACGCCAGCGGTAGCGGCAGCTG
TAGCGGCAGCGCGGCTAGTCTCAGTGGCGAAAACGTGCCTGGTGCAGGCG
AGGGTGTGGCGTCGACCACCGCGCCGCTCTCGACGCAGCAGCAGCCCCCA
GATCCGCCAAGGTGGCCCGAAGGTCTTTCAAGGCCCCCGGGCGTTAGCGC
TTCTGATTTCGAGCGCGGCAGCGGCGATGTCGGCGTTCTACCGTTCAGTT
ACACCCACGAAAGCGTGCTCACGGCCTTGCAGGGGGATGGATGGACCGCT
TTCCTGGCTGCGGCGCACGGCGCGACGGGTATGCCGCCGGCGCTACGTTC
GCAGCTCATGGCGCACGTGGCGAGGAAAGGTAGCGGCGGTGCTGGCCGTG
GCGAAGAAGGAGCGGCGAGTCATCACGCGGTGCAACGAGAGGCAGGGAGG
GCAACGCCGACGACCGCAAAAGACGCCTCGATGCCGTCAAGCCGCCTCGG
CCCCATCCTCCGAGAGGCAGACGCCATCTTGAGCGGCGTAGACTTCCACT
GCAGCGGCGTTCTTGACGAGCTCCTGAGATCCACCGCGGTGTCCGCGCGT
GTGGGAGAAGCGATCCGCCGCCGCCGAAATAAAGCCGGCAGGTGTTGGTG
ATCGTCGTGGAGGATTCCCTCCTGCACCCGGCGGCGCCGCTCCTCACCTG
GTTGATGGTGGCGACTTCGAAGGGCTACCGGCCGCCGTCTTGCCTGCTGG
AGGTGTTCCTCTGCGTGGTGCACGAAACTGCGGCCTGTCCTGTGCGGGAC
TCGACAGATTCCTTCCGCCGCCGGCGCTTTCGTAACAACCATAACCATCA
AATCGCCGGCGCTTGCTCCCCGGGTGCGGCCACAACCTACAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGTG
GCAACGAAAAGTTTCGATGCCGAGGAGTTCCCGGTGCCGCACCCCAAAAG
TTTACTGGTTTCTTCCGGTGGCCGTGACGATGCTGACGGCTGTGCGGACA
GGAACGCAGCCGCAGACGCCGCCGTGGCGAACATTAGGCGTGCCTTGCTC
ATGCGCGTCTCGTACGGGGGGATGCTATGGGACCAGGCATTGTTGAAAGG
GGCGTGTCTGGCGTGGGGGGAGCGCTGCGGGCAATACCACGACTGCAGCT
TGTGTGGTGCCGCTCGCTCTTCTGCTTCGTCCCCTCCTCGTGCTCTCGAC
GGTAACGCCAGCGGTAGCGGCAGCTGTAGCGGCAGCGCGGCTAGTCTCAG
TGGCGAAAACGTGCCTGGTGCAGGCGAGGGTGTGGCGTCGACCACCGCGC
CGCTCTCGACGCAGCAGCAGCCCCCAGATCCGCCAAGGTGGCCCGAAGGT
CTTTCAAGGCCCCCGGGCGTTAGCGCTTCTGATTTCGAGCGCGGCAGCGG
CGATGTCGGCGTTCTACCGTTCAGTTACACCCACGAAAGCGTGCTCACGG
CCTTGCAGGGGGATGGATGGACCGCTTTCCTGGCTGCGGCGCACGGCGCG
ACGGGTATGCCGCCGGCGCTACGTTCGCAGCTCATGGCGCACGTGGCGAG
GAAAGGTAGCGGCGGTGCTGGCCGTGGCGAAGAAGGAGCGGCGAGTCATC
ACGCGGTGCAACGAGAGGCAGGGAGGGCAACGCCGACGACCGCAAAAGAC
GCCTCGATGCCGTCAAGCCGCCTCGGCCCCATCCTCCGAGAGGCAGACGC
CATCTTGAGCGGCGTAGACTTCCACTGCAGCGGCGTTCTTGACGAGCTCC
TGAGATCCACCGCGGTGTCCGCGCGTGTGGGAGAAGCGATCCGCCGCCGC
CGAAATAAAGCCGGCACGACAAGCAGTACGGCAGGGGGAGGCATTTATTC
CGACGAAGAGGTCGTCGGCGTCAGGCAGGCCGCCAAACAGGCCATGTGGG
CCTGCTCCGGAGCGCTCAACGTCCGGAGGCTGCGGGTGACGTTCTCCTCG
AAAGGGGGAGAGGAAACGCGCCAGGACGACGGCAGAAATCGACGAGGTGA
AAGCAAGGCGGCGGGCTGCTGCGGCGACTGCTGGTCCAGTCCAGGGCTCC
TAGAGGAGTTGCCCGGGGTCCGGGTGGTAGCGGGCGATGGTGGCGTTGCG
GTGCTGGGGGACGGCGGGGGTGCCTCGTCGCCCGACGTGAACACCAGGGT
TTGGTCCGCGATTTCGTCGGATGTGTTGGGTTGGACGCGGAGGTTCGTAA
AGGGGAGGCTTGCGAGAGGGTGACGACAAGCAGTACGGCAGGGGGAGGCA
TTTATTCCGACGAAGAGGTCGTCGGCGTCAGGCAGGCCGCCAAACAGGCC
ATGTGGGCCTGCTCCGGAGCGCTCAACGTCCGGAGGCTGCGGGTGACGTT
CTCCTCGAAAGGGGGAGAGGAAACGCGCCAGGACGACGGCAGAAATCGAC
GAGGTGAAAGCAAGGCGGCGGGCTGCTGCGGCGACTGCTGGTCCAGTCCA
GGGCTCCTAGAGGAGTTGCCCGGGGTCCGGGTGGTAGCGGGCGATGGTGG
CGTTGCGGTGCTGGGGGACGGCGGGGGTGCCTCGTCGCCCGACGTGAACA
CCAGGGTTTGGTCCGCGATTTCGTCGGATGTGTTGGGTTGGACGCGGAGG
TTCGTAAAGGGGAGGCTTGCGAGAGGGTGA
back to top