mRNA_L-elsbetiae_contig1740.4880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1740.4880.1
Unique NamemRNA_L-elsbetiae_contig1740.4880.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1740.4880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1740contigL-elsbetiae_contig1740:16626..17718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1093
Cds size1008
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1740.4880.1prot_L-elsbetiae_contig1740.4880.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1740 16684..17691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.7357097-UTR-L-elsbetiae_contig1740:16625..166831622815724.7357097-UTR-L-elsbetiae_contig1740:16625..16683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1740 16626..16683 +
1691683061.6517622-UTR-L-elsbetiae_contig1740:16625..166831691683061.6517622-UTR-L-elsbetiae_contig1740:16625..16683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1740 16626..16683 +
1622815724.7601902-UTR-L-elsbetiae_contig1740:17691..177181622815724.7601902-UTR-L-elsbetiae_contig1740:17691..17718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1740 17692..17718 +
1691683061.6734-UTR-L-elsbetiae_contig1740:17691..177181691683061.6734-UTR-L-elsbetiae_contig1740:17691..17718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1740 17692..17718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.748287-CDS-L-elsbetiae_contig1740:16683..176911622815724.748287-CDS-L-elsbetiae_contig1740:16683..17691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 16684..17691 +
1691683061.6628804-CDS-L-elsbetiae_contig1740:16683..176911691683061.6628804-CDS-L-elsbetiae_contig1740:16683..17691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 16684..17691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1740.4880.1

>prot_L-elsbetiae_contig1740.4880.1 ID=prot_L-elsbetiae_contig1740.4880.1|Name=mRNA_L-elsbetiae_contig1740.4880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
MLELFLRTSGRAHGGRDLGLECLDSLLPALNTARGISCLDGAAATTADLL
LSERRTADDVKNRSRTGAGEGGAQGKSRLEKGRNSCGDHPGIRVSSSKAR
ECGERTTQWPSQRRHFVSKVEVRQRLQLPPAPPAANPLLAGRRLSSSAVS
NGSSAVALENGTAAVSGVHPSASSGKSAPASVPSKGGDRAAAAPGGTRGR
GDSNNSSVSSLSHGSFSSTSEENRSKGEGGGSVDSTATAQGLAQENHTTT
TAVKQTAAADSNKNSKRVFPILSFGNKKSNDVQQPARNVVDDKASAGNAK
AAARGEKPAGTPADQAKTKKSGGGFMSKLFRRGKK*
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mRNA from alignment at L-elsbetiae_contig1740:16626..17718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1740.4880.1 ID=mRNA_L-elsbetiae_contig1740.4880.1|Name=mRNA_L-elsbetiae_contig1740.4880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1093bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:16626..17718+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCAGGAGCCAGCGATCATCGACCAACGGAGGAGCGCTGAAGGCAGGGG
AGGCGCTGATGCTGGAGCTCTTCCTCCGGACTAGCGGCCGTGCCCACGGG
GGGCGAGACCTGGGGTTAGAGTGCCTTGACAGCCTGCTGCCTGCCCTCAA
CACCGCGCGGGGAATCAGTTGCCTGGACGGGGCTGCCGCCACCACCGCTG
ATCTGCTCTTGAGTGAGAGGAGGACAGCGGACGACGTCAAGAACAGATCG
AGGACAGGGGCGGGAGAAGGAGGAGCGCAGGGCAAGAGTAGGCTCGAAAA
AGGTAGAAACAGCTGTGGGGACCACCCAGGGATCCGAGTATCGTCGAGCA
AAGCACGCGAGTGCGGCGAACGGACGACCCAGTGGCCGAGCCAGCGGCGT
CACTTCGTGTCCAAGGTGGAGGTACGGCAACGCCTGCAGCTTCCGCCAGC
TCCACCTGCTGCGAACCCTCTACTGGCGGGCCGGCGCCTCTCATCCAGCG
CTGTCAGCAATGGCAGTTCAGCTGTCGCACTAGAAAACGGCACTGCTGCT
GTGTCTGGCGTGCACCCGTCAGCGAGCAGCGGAAAGTCAGCCCCGGCAAG
CGTGCCCTCGAAAGGAGGAGACAGGGCCGCCGCCGCACCGGGCGGTACTC
GTGGGCGCGGCGACAGCAACAACAGCAGTGTCTCCAGTTTGTCCCACGGG
TCGTTTTCGTCTACGTCGGAGGAGAACAGGTCCAAAGGAGAAGGGGGCGG
CAGTGTCGATTCAACGGCGACAGCGCAAGGCTTGGCCCAGGAAAATCACA
CTACCACTACTGCTGTCAAACAGACGGCCGCAGCAGATAGTAATAAAAAC
TCCAAGAGGGTATTCCCTATTCTGAGCTTTGGGAACAAAAAAAGTAACGA
TGTCCAACAGCCTGCGCGGAATGTCGTGGACGACAAAGCCAGCGCTGGAA
ACGCAAAAGCGGCGGCAAGAGGAGAAAAGCCCGCGGGGACCCCAGCGGAT
CAGGCGAAAACCAAAAAAAGTGGCGGCGGGTTTATGTCGAAGCTGTTCCG
GAGGGGGAAAAAATAGAGGCAGGAGATTTTATGACAAGACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1740:16626..17718+

>mRNA_L-elsbetiae_contig1740.4880.1 ID=mRNA_L-elsbetiae_contig1740.4880.1|Name=mRNA_L-elsbetiae_contig1740.4880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:16626..17718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGAGCTCTTCCTCCGGACTAGCGGCCGTGCCCACGGGGGGCGAGA
CCTGGGGTTAGAGTGCCTTGACAGCCTGCTGCCTGCCCTCAACACCGCGC
GGGGAATCAGTTGCCTGGACGGGGCTGCCGCCACCACCGCTGATCTGCTC
TTGAGTGAGAGGAGGACAGCGGACGACGTCAAGAACAGATCGAGGACAGG
GGCGGGAGAAGGAGGAGCGCAGGGCAAGAGTAGGCTCGAAAAAGGTAGAA
ACAGCTGTGGGGACCACCCAGGGATCCGAGTATCGTCGAGCAAAGCACGC
GAGTGCGGCGAACGGACGACCCAGTGGCCGAGCCAGCGGCGTCACTTCGT
GTCCAAGGTGGAGGTACGGCAACGCCTGCAGCTTCCGCCAGCTCCACCTG
CTGCGAACCCTCTACTGGCGGGCCGGCGCCTCTCATCCAGCGCTGTCAGC
AATGGCAGTTCAGCTGTCGCACTAGAAAACGGCACTGCTGCTGTGTCTGG
CGTGCACCCGTCAGCGAGCAGCGGAAAGTCAGCCCCGGCAAGCGTGCCCT
CGAAAGGAGGAGACAGGGCCGCCGCCGCACCGGGCGGTACTCGTGGGCGC
GGCGACAGCAACAACAGCAGTGTCTCCAGTTTGTCCCACGGGTCGTTTTC
GTCTACGTCGGAGGAGAACAGGTCCAAAGGAGAAGGGGGCGGCAGTGTCG
ATTCAACGGCGACAGCGCAAGGCTTGGCCCAGGAAAATCACACTACCACT
ACTGCTGTCAAACAGACGGCCGCAGCAGATAGTAATAAAAACTCCAAGAG
GGTATTCCCTATTCTGAGCTTTGGGAACAAAAAAAGTAACGATGTCCAAC
AGCCTGCGCGGAATGTCGTGGACGACAAAGCCAGCGCTGGAAACGCAAAA
GCGGCGGCAAGAGGAGAAAAGCCCGCGGGGACCCCAGCGGATCAGGCGAA
AACCAAAAAAAGTGGCGGCGGGTTTATGTCGAAGCTGTTCCGGAGGGGGA
AAAAATAGATGCTGGAGCTCTTCCTCCGGACTAGCGGCCGTGCCCACGGG
GGGCGAGACCTGGGGTTAGAGTGCCTTGACAGCCTGCTGCCTGCCCTCAA
CACCGCGCGGGGAATCAGTTGCCTGGACGGGGCTGCCGCCACCACCGCTG
ATCTGCTCTTGAGTGAGAGGAGGACAGCGGACGACGTCAAGAACAGATCG
AGGACAGGGGCGGGAGAAGGAGGAGCGCAGGGCAAGAGTAGGCTCGAAAA
AGGTAGAAACAGCTGTGGGGACCACCCAGGGATCCGAGTATCGTCGAGCA
AAGCACGCGAGTGCGGCGAACGGACGACCCAGTGGCCGAGCCAGCGGCGT
CACTTCGTGTCCAAGGTGGAGGTACGGCAACGCCTGCAGCTTCCGCCAGC
TCCACCTGCTGCGAACCCTCTACTGGCGGGCCGGCGCCTCTCATCCAGCG
CTGTCAGCAATGGCAGTTCAGCTGTCGCACTAGAAAACGGCACTGCTGCT
GTGTCTGGCGTGCACCCGTCAGCGAGCAGCGGAAAGTCAGCCCCGGCAAG
CGTGCCCTCGAAAGGAGGAGACAGGGCCGCCGCCGCACCGGGCGGTACTC
GTGGGCGCGGCGACAGCAACAACAGCAGTGTCTCCAGTTTGTCCCACGGG
TCGTTTTCGTCTACGTCGGAGGAGAACAGGTCCAAAGGAGAAGGGGGCGG
CAGTGTCGATTCAACGGCGACAGCGCAAGGCTTGGCCCAGGAAAATCACA
CTACCACTACTGCTGTCAAACAGACGGCCGCAGCAGATAGTAATAAAAAC
TCCAAGAGGGTATTCCCTATTCTGAGCTTTGGGAACAAAAAAAGTAACGA
TGTCCAACAGCCTGCGCGGAATGTCGTGGACGACAAAGCCAGCGCTGGAA
ACGCAAAAGCGGCGGCAAGAGGAGAAAAGCCCGCGGGGACCCCAGCGGAT
CAGGCGAAAACCAAAAAAAGTGGCGGCGGGTTTATGTCGAAGCTGTTCCG
GAGGGGGAAAAAATAG
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