mRNA_L-elsbetiae_contig1740.4879.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1740.4879.1
Unique NamemRNA_L-elsbetiae_contig1740.4879.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1740.4879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1740contigL-elsbetiae_contig1740:15154..16020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size867
Cds size867
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.7002583-CDS-L-elsbetiae_contig1740:15153..160201622815724.7002583-CDS-L-elsbetiae_contig1740:15153..16020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 15154..16020 +
1691683061.6403086-CDS-L-elsbetiae_contig1740:15153..160201691683061.6403086-CDS-L-elsbetiae_contig1740:15153..16020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1740 15154..16020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1740.4879.1prot_L-elsbetiae_contig1740.4879.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1740 15154..16020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1740.4879.1

>prot_L-elsbetiae_contig1740.4879.1 ID=prot_L-elsbetiae_contig1740.4879.1|Name=mRNA_L-elsbetiae_contig1740.4879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
MESPDTNACNNSSRDSEGRGSSGRSRGSSNSSSAIGAVVRAACLVAAQGL
MDPNKEVRLAGEDLTRSALSLWSLVPAAAGEEAGGEDDAETGAARATVQP
SNATAKNGCASDGGTSITGNGGTIGNAAVSSGSVGSDDDARMDTVGKREA
ASEKEGTDGLPTKAAQNDFSRADSQREGQDSSARSPVNGSATSIAVPKTR
AAVPLRDLRWSLELVLACVAPFLEHGAALPEENGNGTMPTNGGTATRPVG
NDSNRRSTSASIDGRTETGSSPDDNFAGDPLDGAAVGEG
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mRNA from alignment at L-elsbetiae_contig1740:15154..16020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1740.4879.1 ID=mRNA_L-elsbetiae_contig1740.4879.1|Name=mRNA_L-elsbetiae_contig1740.4879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=867bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:15154..16020+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAGCCCCGACACCAACGCCTGCAATAACAGCAGTAGAGATAGCGA
AGGCAGGGGCAGTAGCGGTAGAAGCCGTGGCAGTAGTAATAGCAGTAGCG
CAATTGGCGCTGTCGTGAGGGCCGCGTGCCTCGTTGCGGCGCAGGGGCTG
ATGGACCCGAATAAAGAAGTGCGCCTTGCCGGAGAAGATTTGACGAGATC
GGCTCTCTCGCTGTGGTCTTTGGTACCCGCTGCCGCCGGCGAAGAGGCCG
GGGGTGAAGACGATGCTGAAACCGGCGCTGCCCGCGCGACAGTGCAGCCG
TCGAATGCCACCGCCAAGAATGGATGCGCTAGCGATGGAGGCACTAGCAT
CACCGGTAACGGTGGTACGATCGGCAACGCCGCTGTTAGCAGTGGAAGCG
TCGGCAGCGACGATGATGCGCGCATGGACACTGTTGGAAAGAGAGAGGCC
GCTAGTGAGAAGGAGGGCACAGACGGACTTCCGACAAAAGCAGCCCAGAA
TGACTTTTCGAGGGCCGATTCACAACGAGAGGGCCAGGACAGCTCTGCAA
GAAGCCCGGTGAACGGCTCAGCCACAAGCATCGCCGTGCCGAAGACTCGC
GCTGCAGTGCCGCTGAGGGACCTGCGATGGAGTCTGGAGCTAGTTCTCGC
ATGCGTGGCTCCGTTTTTGGAACACGGAGCTGCGTTACCCGAAGAAAACG
GTAACGGGACCATGCCTACAAATGGCGGGACTGCCACCAGGCCCGTCGGC
AACGACAGCAACCGCCGCTCAACTAGCGCCTCGATCGACGGTCGCACAGA
AACAGGTTCTTCGCCCGACGACAACTTTGCGGGAGATCCTCTAGATGGAG
CGGCGGTGGGAGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1740:15154..16020+

>mRNA_L-elsbetiae_contig1740.4879.1 ID=mRNA_L-elsbetiae_contig1740.4879.1|Name=mRNA_L-elsbetiae_contig1740.4879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig1740:15154..16020+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAGCCCCGACACCAACGCCTGCAATAACAGCAGTAGAGATAGCGA
AGGCAGGGGCAGTAGCGGTAGAAGCCGTGGCAGTAGTAATAGCAGTAGCG
CAATTGGCGCTGTCGTGAGGGCCGCGTGCCTCGTTGCGGCGCAGGGGCTG
ATGGACCCGAATAAAGAAGTGCGCCTTGCCGGAGAAGATTTGACGAGATC
GGCTCTCTCGCTGTGGTCTTTGGTACCCGCTGCCGCCGGCGAAGAGGCCG
GGGGTGAAGACGATGCTGAAACCGGCGCTGCCCGCGCGACAGTGCAGCCG
TCGAATGCCACCGCCAAGAATGGATGCGCTAGCGATGGAGGCACTAGCAT
CACCGGTAACGGTGGTACGATCGGCAACGCCGCTGTTAGCAGTGGAAGCG
TCGGCAGCGACGATGATGCGCGCATGGACACTGTTGGAAAGAGAGAGGCC
GCTAGTGAGAAGGAGGGCACAGACGGACTTCCGACAAAAGCAGCCCAGAA
TGACTTTTCGAGGGCCGATTCACAACGAGAGGGCCAGGACAGCTCTGCAA
GAAGCCCGGTGAACGGCTCAGCCACAAGCATCGCCGTGCCGAAGACTCGC
GCTGCAGTGCCGCTGAGGGACCTGCGATGGAGTCTGGAGCTAGTTCTCGC
ATGCGTGGCTCCGTTTTTGGAACACGGAGCTGCGTTACCCGAAGAAAACG
GTAACGGGACCATGCCTACAAATGGCGGGACTGCCACCAGGCCCGTCGGC
AACGACAGCAACCGCCGCTCAACTAGCGCCTCGATCGACGGTCGCACAGA
AACAGGTTCTTCGCCCGACGACAACTTTGCGGGAGATCCTCTAGATGGAG
CGGCGGTGGGAGAGGGGATGGAAAGCCCCGACACCAACGCCTGCAATAAC
AGCAGTAGAGATAGCGAAGGCAGGGGCAGTAGCGGTAGAAGCCGTGGCAG
TAGTAATAGCAGTAGCGCAATTGGCGCTGTCGTGAGGGCCGCGTGCCTCG
TTGCGGCGCAGGGGCTGATGGACCCGAATAAAGAAGTGCGCCTTGCCGGA
GAAGATTTGACGAGATCGGCTCTCTCGCTGTGGTCTTTGGTACCCGCTGC
CGCCGGCGAAGAGGCCGGGGGTGAAGACGATGCTGAAACCGGCGCTGCCC
GCGCGACAGTGCAGCCGTCGAATGCCACCGCCAAGAATGGATGCGCTAGC
GATGGAGGCACTAGCATCACCGGTAACGGTGGTACGATCGGCAACGCCGC
TGTTAGCAGTGGAAGCGTCGGCAGCGACGATGATGCGCGCATGGACACTG
TTGGAAAGAGAGAGGCCGCTAGTGAGAAGGAGGGCACAGACGGACTTCCG
ACAAAAGCAGCCCAGAATGACTTTTCGAGGGCCGATTCACAACGAGAGGG
CCAGGACAGCTCTGCAAGAAGCCCGGTGAACGGCTCAGCCACAAGCATCG
CCGTGCCGAAGACTCGCGCTGCAGTGCCGCTGAGGGACCTGCGATGGAGT
CTGGAGCTAGTTCTCGCATGCGTGGCTCCGTTTTTGGAACACGGAGCTGC
GTTACCCGAAGAAAACGGTAACGGGACCATGCCTACAAATGGCGGGACTG
CCACCAGGCCCGTCGGCAACGACAGCAACCGCCGCTCAACTAGCGCCTCG
ATCGACGGTCGCACAGAAACAGGTTCTTCGCCCGACGACAACTTTGCGGG
AGATCCTCTAGATGGAGCGGCGGTGGGAGAGGGG
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