mRNA_L-elsbetiae_contig17373.4865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17373.4865.1
Unique NamemRNA_L-elsbetiae_contig17373.4865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.630e-27
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQIQ 165
            RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQ+Q
Sbjct:   18 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.310e-16
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            +DAKSVKIK  K    TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K I
Sbjct:   18 KDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: H3BEF3_LATCH (60S ribosomal protein L38 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BEF3_LATCH)

HSP 1 Score: 80.1 bits (196), Expect = 3.150e-15
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQIQ*FHSI 180
            +DAKSVKIK NK   + KFK+RCS+YLYTL +TDKEKA+KL QSLPPGL KK+I+   S+
Sbjct:   25 KDAKSVKIKKNK--ENVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPGLRKKKIKKTKSV 82
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.240e-15
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            +DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: UPI00083C7834 (60S ribosomal protein L38 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7834)

HSP 1 Score: 79.3 bits (194), Expect = 4.590e-15
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQ 159
            +DAKSVKIKNN   ++TKFK+RCSR+LYTL + DKEKA+KL QSLPPGL  K+
Sbjct:   18 KDAKSVKIKNNPKKNNTKFKVRCSRFLYTLVINDKEKAEKLKQSLPPGLQVKE 70
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR)

HSP 1 Score: 79.0 bits (193), Expect = 5.850e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            +DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC)

HSP 1 Score: 79.0 bits (193), Expect = 5.850e-15
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            +DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.850e-15
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 DAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            DAK VKIK  K    TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   19 DAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.730e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 162
            +DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   37 KDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
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BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: RL38_BRABE (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE)

HSP 1 Score: 78.2 bits (191), Expect = 1.140e-14
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQIQ 165
            +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K+++
Sbjct:   18 KDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI1.630e-2798.1860S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ21_9STRA2.310e-1677.78Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
H3BEF3_LATCH3.150e-1566.6760S ribosomal protein L38 n=1 Tax=Latimeria chalum... [more]
A0A485KGK6_9STRA4.240e-1574.07Aste57867_4412 protein n=3 Tax=Saprolegniaceae Tax... [more]
UPI00083C78344.590e-1569.8160S ribosomal protein L38 n=1 Tax=Nicrophorus vesp... [more]
W2IQQ0_PHYPR5.850e-1574.0760S ribosomal protein L38 n=16 Tax=Peronosporaceae... [more]
A0A067CFE6_SAPPC5.850e-1574.0760S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4... [more]
A0A1E7ETU4_9STRA5.850e-1577.36Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID... [more]
M4BFU5_HYAAE9.730e-1574.07Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
RL38_BRABE1.140e-1470.9160S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17373contigL-elsbetiae_contig17373:748..2500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue6.6e-23
Seed eggNOG ortholog2880.D7FM71
Preferred nameRPL38
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000028,GO:0000184,GO:0000956,GO:0001501,GO:0001503,GO:0002181,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007423,GO:0007498,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033291,GO:0033365,GO:0034248,GO:0034463,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042471,GO:0042474,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048318,GO:0048513,GO:0048519,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050954,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0070992,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0090596,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3499@1,KOG3499@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog descriptionRibosomal protein L38e
Ec32 orthologEc-16_004840.1
Exons2
Model size1115
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17373.4865.1prot_L-elsbetiae_contig17373.4865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17373 1693..2500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.255214-UTR-L-elsbetiae_contig17373:747..16921622815723.255214-UTR-L-elsbetiae_contig17373:747..1692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17373 748..1692 -
1691683060.5450237-UTR-L-elsbetiae_contig17373:747..16921691683060.5450237-UTR-L-elsbetiae_contig17373:747..1692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17373 748..1692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.266703-CDS-L-elsbetiae_contig17373:1692..17851622815723.266703-CDS-L-elsbetiae_contig17373:1692..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17373 1693..1785 -
1691683060.5587068-CDS-L-elsbetiae_contig17373:1692..17851691683060.5587068-CDS-L-elsbetiae_contig17373:1692..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17373 1693..1785 -
1622815723.2772207-CDS-L-elsbetiae_contig17373:2425..25001622815723.2772207-CDS-L-elsbetiae_contig17373:2425..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17373 2426..2500 -
1691683060.5680325-CDS-L-elsbetiae_contig17373:2425..25001691683060.5680325-CDS-L-elsbetiae_contig17373:2425..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17373 2426..2500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17373.4865.1

>prot_L-elsbetiae_contig17373.4865.1 ID=prot_L-elsbetiae_contig17373.4865.1|Name=mRNA_L-elsbetiae_contig17373.4865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLH
KKQIQ*
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mRNA from alignment at L-elsbetiae_contig17373:748..2500-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17373.4865.1 ID=mRNA_L-elsbetiae_contig17373.4865.1|Name=mRNA_L-elsbetiae_contig17373.4865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1753bp|location=Sequence derived from alignment at L-elsbetiae_contig17373:748..2500- (Laminarionema elsbetiae ELsaHSoW15)
CGCGATGCCAAGTCGGTGAAGATCAAAAACAACAAGGCGACGCACTCGAC
CAAGTTCAAGATCCGCTGCTCCAGGGTGAGTCTGATTCCGAGTCAGATAA
AGGCACAACTCATAATATACCTTGGTAAAATTATGCTGATCGCGTTGCGT
GGATCAATCCCGCAGCGTTTTGTCGAGTGATGGAACATATAATCTAGGTG
GAACGTGGGAAGGTGACGCATGTGTCCCCTCCAAGGGTTTCCGATTTCGT
ATGTTTCGGGAAGGTGGCATGTTTATTGCTGCCGTTTGTCATGTTTGGCG
AAGAGCGCGGAGCGACTGTTGCTGTTGTTTCTGCCGCCCGATTTAACGTG
TATCCCAACTTGAATCTGTGAGTATTCTCCCTCTCCCTCGCTGCGTGTAG
ATGTGTGTATGCATGTCTACAAGTCTATCTCAGTTACGAAATCGCCGTCT
CACTCAACTTTTGCTCGAAGTATCTTGGCATTTCATGGCATAGCGCCATG
AGGGAATGAAAGTAAGCTTCCGCCGTCGTATTCATGAAGCAAACTGACCC
CAAAAGCCGATCTTCTTTGTTTTCTCGAACCTTGATAATCTTCCCCCCCC
ATGAATGCTCTTGGTCATGCATCGCACGCAGGCCGACGCCCTCCGTGTTT
CTGTTTTACAAAACCGTCGTTCTCCCACCCTCGTTTTTGTATTGCTGCCG
GACACCACGCCACAGTACCTGTACACCCTGTGCGTGACGGACAAGGAGAA
GGCCGACAAGCTCACGCAGTCGCTGCCCCCTGGCCTGCACAAGAAGCAGA
TCCAATGATTCCATTCCATTCCACTCCGCCCGGGCTCTCGCTTTGAGGTT
GACTCGATTGGCTGAAGTTACTTGGTCGTGATCTGGAGGACTCTAGCTGG
CTGGCTGCTAGCAGTACGCCGACCGGGTGGAGCTGGGACTCTTGGGAAGG
ATTTGGTGTACGGTCTGTTGCTGTAGCGCGGGGACGAGGAGAACAAGGGA
AAGCATTTCATGGCACGCCCACGGCGGTCATCGAGGCCACTGTTTTCGAT
GTTGCAGGCTCTTGCGTCCTTCTTTTTGTTCTCGAGCGCGGTGAACGGCG
GTTGTGTTGACTGCCGCCGGCATGCCTGCTTTACCTTGTCGTCTTTGGGA
GGGATCCCCGTGACGTGGTGGGTTGAGTTGACGCGGGGTGTGGTATTTGG
GATTTGAGGAACTGGACTGTGCCGAGCTGACTGCTGCTCGAAAAAAACGA
TTTTTTCAGACGTTTCCCCGCTTGCTGCAAGTGCACGGCAATGTTGCCTC
CAGCCTCGTCTCGTCTCGTCCGGTAGGCGAGCGTGCGTGTGTCGTGTACT
AGCAGCAGCAGCGTTTTTGTCCGCGCATGGCGGCGAGGAATGGGTGGCGC
TGACCCTCTCGTTCGTTCTCTGCCGTACCATCGTCATGTCATCCTCATTT
TATCTAATCTTTCGCGACTTGCCATCGTGAAACGGTTCGGCCATGCGGCG
TCCAGACTTGTTGGGCACTCACGTCTCTCTAGTTTGACATGTGTCGCTGC
TGCAAGGTGACTGCACACACAGAATCGCAACAACAGCAGCCAAGTTAGCG
TCTCATCCGCCACAAGGCGTCCGCAGTTCAATTCAAATCATGTACTTATC
ATGGCGGTGCCAGTTTTGGTGTACAGCAGTATGGTATGGCCCAAGGCAGG
CGGCGGCCACAAAAGTATATACGATCGGAGTCGATCACCGAAAAAAATGC
GAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17373:748..2500-

>mRNA_L-elsbetiae_contig17373.4865.1 ID=mRNA_L-elsbetiae_contig17373.4865.1|Name=mRNA_L-elsbetiae_contig17373.4865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig17373:748..2500- (Laminarionema elsbetiae ELsaHSoW15)
CGCGATGCCAAGTCGGTGAAGATCAAAAACAACAAGGCGACGCACTCGAC
CAAGTTCAAGATCCGCTGCTCCAGGCGCGATGCCAAGTCGGTGAAGATCA
AAAACAACAAGGCGACGCACTCGACCAAGTTCAAGATCCGCTGCTCCAGG
TACCTGTACACCCTGTGCGTGACGGACAAGGAGAAGGCCGACAAGCTCAC
GCAGTCGCTGCCCCCTGGCCTGCACAAGAAGCAGATCCAATGATACCTGT
ACACCCTGTGCGTGACGGACAAGGAGAAGGCCGACAAGCTCACGCAGTCG
CTGCCCCCTGGCCTGCACAAGAAGCAGATCCAATGA
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