mRNA_L-elsbetiae_contig1737.4861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1737.4861.1
Unique NamemRNA_L-elsbetiae_contig1737.4861.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1737.4861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1737contigL-elsbetiae_contig1737:1453..2001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1737.4861.1prot_L-elsbetiae_contig1737.4861.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1737 1457..1894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.9853058-UTR-L-elsbetiae_contig1737:1452..14561622815722.9853058-UTR-L-elsbetiae_contig1737:1452..1456Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1737 1453..1456 +
1691683060.393821-UTR-L-elsbetiae_contig1737:1452..14561691683060.393821-UTR-L-elsbetiae_contig1737:1452..1456Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1737 1453..1456 +
1622815723.0091467-UTR-L-elsbetiae_contig1737:1894..20011622815723.0091467-UTR-L-elsbetiae_contig1737:1894..2001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1737 1895..2001 +
1691683060.4217231-UTR-L-elsbetiae_contig1737:1894..20011691683060.4217231-UTR-L-elsbetiae_contig1737:1894..2001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1737 1895..2001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.9963806-CDS-L-elsbetiae_contig1737:1456..18941622815722.9963806-CDS-L-elsbetiae_contig1737:1456..1894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 1457..1894 +
1691683060.41008-CDS-L-elsbetiae_contig1737:1456..18941691683060.41008-CDS-L-elsbetiae_contig1737:1456..1894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 1457..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1737.4861.1

>prot_L-elsbetiae_contig1737.4861.1 ID=prot_L-elsbetiae_contig1737.4861.1|Name=mRNA_L-elsbetiae_contig1737.4861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MKEPEDSQPQGLTEEFRILVFIGSCFKAKSRFCGEMGQSWRKIYGIFCGR
WFPISNWASGSGLKYWNRKFDPASPVPTSPVEIYRAHVLTPVNFSKLTEP
QAVCSSGSSLVTIPTQGHEVLRLASSNWRSGGGLSWQIRETHTEL*
back to top

mRNA from alignment at L-elsbetiae_contig1737:1453..2001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1737.4861.1 ID=mRNA_L-elsbetiae_contig1737.4861.1|Name=mRNA_L-elsbetiae_contig1737.4861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=549bp|location=Sequence derived from alignment at L-elsbetiae_contig1737:1453..2001+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCATGAAAGAGCCTGAAGATAGCCAACCCCAAGGATTGACCGAGGAAT
TTCGAATTTTGGTATTTATTGGTTCTTGTTTCAAAGCGAAAAGTCGATTT
TGCGGTGAGATGGGGCAAAGCTGGAGAAAGATCTATGGCATTTTCTGTGG
GAGATGGTTCCCAATTTCTAATTGGGCTTCCGGTTCGGGATTGAAATACT
GGAATAGGAAATTTGACCCCGCATCTCCCGTACCCACATCTCCCGTAGAG
ATCTACCGTGCCCACGTCTTGACCCCGGTGAATTTCTCGAAGCTCACGGA
ACCTCAGGCCGTCTGCTCGAGCGGGTCATCGCTCGTAACCATCCCGACCC
AGGGGCACGAAGTCTTACGGCTCGCCTCGTCGAACTGGCGGAGCGGCGGC
GGTTTGAGTTGGCAGATCCGCGAAACCCACACTGAACTTTAGTCGACCAG
CAGGGACACACGAAACCACGCATCCACTTGCAGATATCTACCTCCCTACT
GTACGAAACAATCTCTCCTTCTGGCGGTGCTCGGATACATACCAGTCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1737:1453..2001+

>mRNA_L-elsbetiae_contig1737.4861.1 ID=mRNA_L-elsbetiae_contig1737.4861.1|Name=mRNA_L-elsbetiae_contig1737.4861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig1737:1453..2001+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAGCCTGAAGATAGCCAACCCCAAGGATTGACCGAGGAATTTCG
AATTTTGGTATTTATTGGTTCTTGTTTCAAAGCGAAAAGTCGATTTTGCG
GTGAGATGGGGCAAAGCTGGAGAAAGATCTATGGCATTTTCTGTGGGAGA
TGGTTCCCAATTTCTAATTGGGCTTCCGGTTCGGGATTGAAATACTGGAA
TAGGAAATTTGACCCCGCATCTCCCGTACCCACATCTCCCGTAGAGATCT
ACCGTGCCCACGTCTTGACCCCGGTGAATTTCTCGAAGCTCACGGAACCT
CAGGCCGTCTGCTCGAGCGGGTCATCGCTCGTAACCATCCCGACCCAGGG
GCACGAAGTCTTACGGCTCGCCTCGTCGAACTGGCGGAGCGGCGGCGGTT
TGAGTTGGCAGATCCGCGAAACCCACACTGAACTTTAGATGAAAGAGCCT
GAAGATAGCCAACCCCAAGGATTGACCGAGGAATTTCGAATTTTGGTATT
TATTGGTTCTTGTTTCAAAGCGAAAAGTCGATTTTGCGGTGAGATGGGGC
AAAGCTGGAGAAAGATCTATGGCATTTTCTGTGGGAGATGGTTCCCAATT
TCTAATTGGGCTTCCGGTTCGGGATTGAAATACTGGAATAGGAAATTTGA
CCCCGCATCTCCCGTACCCACATCTCCCGTAGAGATCTACCGTGCCCACG
TCTTGACCCCGGTGAATTTCTCGAAGCTCACGGAACCTCAGGCCGTCTGC
TCGAGCGGGTCATCGCTCGTAACCATCCCGACCCAGGGGCACGAAGTCTT
ACGGCTCGCCTCGTCGAACTGGCGGAGCGGCGGCGGTTTGAGTTGGCAGA
TCCGCGAAACCCACACTGAACTTTAG
back to top