mRNA_L-elsbetiae_contig1735.4856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1735.4856.1
Unique NamemRNA_L-elsbetiae_contig1735.4856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1735.4856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1735contigL-elsbetiae_contig1735:1345..2539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.6097317-CDS-L-elsbetiae_contig1735:1345..13941622815722.6097317-CDS-L-elsbetiae_contig1735:1345..1394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1735 1346..1394 -
1691683060.152846-CDS-L-elsbetiae_contig1735:1345..13941691683060.152846-CDS-L-elsbetiae_contig1735:1345..1394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1735 1346..1394 -
1622815722.6229827-CDS-L-elsbetiae_contig1735:2129..25391622815722.6229827-CDS-L-elsbetiae_contig1735:2129..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1735 2130..2539 -
1691683060.1710477-CDS-L-elsbetiae_contig1735:2129..25391691683060.1710477-CDS-L-elsbetiae_contig1735:2129..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1735 2130..2539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1735.4856.1prot_L-elsbetiae_contig1735.4856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1735 1346..2539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1735.4856.1

>prot_L-elsbetiae_contig1735.4856.1 ID=prot_L-elsbetiae_contig1735.4856.1|Name=mRNA_L-elsbetiae_contig1735.4856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
QRCGGAGRGFYNIYSSSSSTNSSSSSASLQGMPAHRQRCGGAGRGFYNIY
SSSSSTNSSSSSATSSASSTSSSPAKSSSTSATSSPSSSTYVIYIKHRLA
FTKPPSGTSNRALPLRSSSSMAGRTKWSGAGNRDASSTIASERAARKLGG
EGG
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mRNA from alignment at L-elsbetiae_contig1735:1345..2539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1735.4856.1 ID=mRNA_L-elsbetiae_contig1735.4856.1|Name=mRNA_L-elsbetiae_contig1735.4856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1195bp|location=Sequence derived from alignment at L-elsbetiae_contig1735:1345..2539- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTATAACATCTACAGCTCTTC
ATCGTCAACCAACTCGTCTTCGTCATCAGCCAGTCTTCAGGGAATGCCCG
CCCATCGCCAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTATAACATCTAC
AGCTCTTCATCGTCAACCAACTCGTCTTCGTCATCAGCCACGTCATCAGC
ATCATCTACGTCATCTTCACCAGCCAAGTCGTCATCTACATCAGCCACGT
CATCACCATCGTCATCTACATACGTTATCTACATCAAGCACCGCCTAGCT
TTCACCAAACCTCCTTCGGGAACGTCAAACCGAGCTCTACCGCTCCGGTC
CTCCAGCTCCATGGCTGGAAGGACGAAGTGGTCTGGTGCCGGTAACCGTG
ATGCGAGCAGGTACGGTGGTCGCTGGTGGGGAGGACACACGGTAAATGAT
TAGGTGACCAAGGCTGCGTTGGAAAGGAAAGAGGGGCTGGTTCGTTTGAT
GTTTTGTTGGGCATACTTCGGTACACTGAAGGAGCCAGCTCCCGGCTGCT
GGAGCGGCTCGTCACCGGCCGACCCTTTGCCACACACGGGGTCTTCCGAA
GTTTATATCGGTGTGGTATGACCTATTCGCTGATACACCGTACCCTGCCT
TCAAAGCTGTCGATGTGTAGCGTCCAAATGTTTACCCACGTAGCATCTTG
AAAGGCATCAAATGTACATTTCCGCCGAGACCCTCTCACACGATTACTTA
CCTATCTACATACTAGGATTAAGACGTACTGATATACTTGGAGGCTGTGC
TCGCATGTTTTGCGTTACATTGCCTGAGACGGGTGCGAGAGTCTTCGTGC
TCGAGGCGTGTCTTGCTCCCTGCATCTCCACCAAAAGCATGCATAAATAA
TTGCCCGCGGGCTTTCAAGTGGCATTGTCGTCCAGGCAGATGGCAAAGCG
CGTCGTCTGTGTATGCTGCCAACATCCCACCTCACCGCACCCAACGTCTT
CTACAGCCTCCCGGGGATGGTACGGTCTACGAAAAACAGGGCGCCTAAAA
CAGCTGCCGGTTTTCGTCTCAGACACACAATGTAATTTGTACGGGAGCTG
AGTATTCTGCTGCCATTTTGTGGTGATTTGTGTGCCACTGAACAGTACTA
TCGCATCTGAACGGGCAGCAAGAAAGCTAGGGGGGGAGGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1735:1345..2539-

>mRNA_L-elsbetiae_contig1735.4856.1 ID=mRNA_L-elsbetiae_contig1735.4856.1|Name=mRNA_L-elsbetiae_contig1735.4856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig1735:1345..2539- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTATAACATCTACAGCTCTTC
ATCGTCAACCAACTCGTCTTCGTCATCAGCCAGTCTTCAGGGAATGCCCG
CCCATCGCCAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTATAACATCTAC
AGCTCTTCATCGTCAACCAACTCGTCTTCGTCATCAGCCACGTCATCAGC
ATCATCTACGTCATCTTCACCAGCCAAGTCGTCATCTACATCAGCCACGT
CATCACCATCGTCATCTACATACGTTATCTACATCAAGCACCGCCTAGCT
TTCACCAAACCTCCTTCGGGAACGTCAAACCGAGCTCTACCGCTCCGGTC
CTCCAGCTCCATGGCTGGAAGGACGAAGTGGTCTGGTGCCGGTAACCGTG
ATGCGAGCAGCAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTATAACATCT
ACAGCTCTTCATCGTCAACCAACTCGTCTTCGTCATCAGCCAGTCTTCAG
GGAATGCCCGCCCATCGCCAGCGCTGCGGCGGTGCCGGTCGCGGCTTCTA
TAACATCTACAGCTCTTCATCGTCAACCAACTCGTCTTCGTCATCAGCCA
CGTCATCAGCATCATCTACGTCATCTTCACCAGCCAAGTCGTCATCTACA
TCAGCCACGTCATCACCATCGTCATCTACATACGTTATCTACATCAAGCA
CCGCCTAGCTTTCACCAAACCTCCTTCGGGAACGTCAAACCGAGCTCTAC
CGCTCCGGTCCTCCAGCTCCATGGCTGGAAGGACGAAGTGGTCTGGTGCC
GGTAACCGTGATGCGAGCAGTACTATCGCATCTGAACGGGCAGCAAGAAA
GCTAGGGGGGGAGGGCGGCTACTATCGCATCTGAACGGGCAGCAAGAAAG
CTAGGGGGGGAGGGCGGC
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