prot_L-elsbetiae_contig1733.4847.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1733.4847.1
Unique Nameprot_L-elsbetiae_contig1733.4847.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length103
Homology
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI0009313B52 (RlmE family RNA methyltransferase n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009313B52)

HSP 1 Score: 87.0 bits (214), Expect = 9.460e-19
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            ++R L DPYV+AA  AG  SRA FKL+EI+DKHR L  G RVVDLGAAPGGWS +AA  V A G RG
Sbjct:   45 LERQLNDPYVTAAKRAGYRSRAVFKLIEIDDKHRFLKPGGRVVDLGAAPGGWSQIAAERVQAIGGRG 111          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A835ZAB4_9STRA (Ribosomal RNA large subunit methyltransferase j n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.120e-18
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARG 64
            M+RH+ DPYV  A+  G  SRAAFKL E+  KHR+L  G RVVDLGAAPGGWS+VAA I+  +G
Sbjct:    1 MQRHVSDPYVQRAVAGGLRSRAAFKLQELQSKHRLLRPGARVVDLGAAPGGWSVVAAGIIGEKG 64          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A1Q7BWV6_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BWV6_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 2.880e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            ++R L DPYV+ A G G   RAAFKL+EI+DKH +L  G RVVDLGAAPGGWS VAAR V +   RG
Sbjct:   28 LERQLNDPYVARAKGEGFRGRAAFKLIEIDDKHHLLKPGARVVDLGAAPGGWSQVAARRVGSAQGRG 94          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI001BD418C0 (RlmE family RNA methyltransferase n=1 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD418C0)

HSP 1 Score: 82.8 bits (203), Expect = 2.930e-17
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            ++R L DPYV+ A   G  SRAA+KL+EI+DKHR L  G  VVDLGAAPGGWS VAA+ VHA   +G
Sbjct:   27 LERQLNDPYVAQAKRDGYRSRAAYKLIEIDDKHRFLKPGSTVVDLGAAPGGWSQVAAKRVHATNGKG 93          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A0H5BNY3_BLAVI (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Blastochloris viridis TaxID=1079 RepID=A0A0H5BNY3_BLAVI)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-17
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIV 60
            +KR L DPYV+ A  AG  SRAAFKLVEI+DK+ VL  G RVVDLGAAPGGWS +AA+ V
Sbjct:   30 LKRQLNDPYVARARAAGYRSRAAFKLVEIDDKYHVLKRGQRVVDLGAAPGGWSQIAAQRV 89          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI001BBB1535 (RlmE family RNA methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BBB1535)

HSP 1 Score: 81.6 bits (200), Expect = 8.110e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            +KR L DPYV  A   G  SRAAFKL+EI+DKH++L  G RVVDLGAAPGGWS VAA  V A   +G
Sbjct:   29 LKRQLNDPYVRKAHAEGYRSRAAFKLLEIDDKHKILKRGARVVDLGAAPGGWSQVAAERVGAEKGQG 95          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A1L3SVM7_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Aquibium oceanicum TaxID=1670800 RepID=A0A1L3SVM7_9HYPH)

HSP 1 Score: 81.6 bits (200), Expect = 9.640e-17
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIV 60
            ++RHL DPYV  A   G  SRAAFKL+EI+++H++L  G RV+DLGAAPGGWS VAARI 
Sbjct:   31 LERHLNDPYVHRAKAEGFRSRAAFKLIEIDERHKLLKPGLRVIDLGAAPGGWSQVAARIT 90          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A6L5FR64_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FR64_9HYPH)

HSP 1 Score: 82.0 bits (201), Expect = 1.020e-16
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            ++R L DPYV+ A   G  SRAA+KL EI+DKHR+L  G RVVDLGAAPGGWS +AAR V A   +G
Sbjct:   65 LERQLNDPYVARAKREGYRSRAAYKLTEIDDKHRILKPGGRVVDLGAAPGGWSQIAARRVGADAGKG 131          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A0D6JFQ9_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JFQ9_9HYPH)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHA 62
            ++R L DPYV+AA   G  SRAA+KL+EI+DKHR+L  G RV+DLGAAPGGWS +AA  V A
Sbjct:   37 LERQLNDPYVAAAKREGMRSRAAYKLLEIDDKHRILKPGQRVIDLGAAPGGWSQIAADRVKA 98          
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A317HT97_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317HT97_9PROT)

HSP 1 Score: 80.9 bits (198), Expect = 1.710e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    1 MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 67
            ++R L DPYV+AA   G  SRAA+KL+EI+DK R+L  G RVVDLGAAPGGWS VAA  V A   RG
Sbjct:   33 LERQLNDPYVAAAKREGYRSRAAYKLIEIDDKRRLLKPGGRVVDLGAAPGGWSQVAAERVRALEGRG 99          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009313B529.460e-1965.67RlmE family RNA methyltransferase n=1 Tax=Hyphomic... [more]
A0A835ZAB4_9STRA6.120e-1862.50Ribosomal RNA large subunit methyltransferase j n=... [more]
A0A1Q7BWV6_9PROT2.880e-1762.69Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI001BD418C02.930e-1761.19RlmE family RNA methyltransferase n=1 Tax=Bradyrhi... [more]
A0A0H5BNY3_BLAVI2.980e-1768.33Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI001BBB15358.110e-1762.69RlmE family RNA methyltransferase n=1 Tax=Hyphomic... [more]
A0A1L3SVM7_9HYPH9.640e-1763.33Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6L5FR64_9HYPH1.020e-1661.19Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0D6JFQ9_9HYPH1.130e-1662.90Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A317HT97_9PROT1.710e-1662.69Ribosomal RNA large subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 1..79
e-value: 7.9E-17
score: 63.3
NoneNo IPR availablePANTHERPTHR10920:SF20RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE Ecoord: 1..64
NoneNo IPR availablePANTHERPTHR10920RIBOSOMAL RNA METHYLTRANSFERASEcoord: 1..64
IPR002877Ribosomal RNA methyltransferase FtsJ domainPFAMPF01728FtsJcoord: 20..62
e-value: 4.0E-13
score: 49.9
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 2..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:11264..12533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4847.1mRNA_L-elsbetiae_contig1733.4847.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1733 11251..12533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1733.4847.1 ID=prot_L-elsbetiae_contig1733.4847.1|Name=mRNA_L-elsbetiae_contig1733.4847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPG
GWSMVAARIVHARGARGGSQQRGSPSSRGGAPPQLPPPLPEARVEAAERR
GRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002877rRNA_MeTrfase_FtsJ_dom
IPR029063SAM-dependent_MTases