mRNA_L-elsbetiae_contig1733.4847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1733.4847.1
Unique NamemRNA_L-elsbetiae_contig1733.4847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI0009313B52 (RlmE family RNA methyltransferase n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009313B52)

HSP 1 Score: 92.0 bits (227), Expect = 1.320e-20
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S  W++R L DPYV+AA  AG  SRA FKL+EI+DKHR L  G RVVDLGAAPGGWS +AA  V A G RG
Sbjct:   41 SQRWLERQLNDPYVTAAKRAGYRSRAVFKLIEIDDKHRFLKPGGRVVDLGAAPGGWSQIAAERVQAIGGRG 111
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BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A1Q7BWV6_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BWV6_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 5.140e-20
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S LW++R L DPYV+ A G G   RAAFKL+EI+DKH +L  G RVVDLGAAPGGWS VAAR V +   RG
Sbjct:   24 SKLWLERQLNDPYVARAKGEGFRGRAAFKLIEIDDKHHLLKPGARVVDLGAAPGGWSQVAARRVGSAQGRG 94
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BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI001BD418C0 (RlmE family RNA methyltransferase n=1 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD418C0)

HSP 1 Score: 90.1 bits (222), Expect = 5.240e-20
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S LW++R L DPYV+ A   G  SRAA+KL+EI+DKHR L  G  VVDLGAAPGGWS VAA+ VHA   +G
Sbjct:   23 SKLWLERQLNDPYVAQAKRDGYRSRAAYKLIEIDDKHRFLKPGSTVVDLGAAPGGWSQVAAKRVHATNGKG 93
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A0H5BNY3_BLAVI (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Blastochloris viridis TaxID=1079 RepID=A0A0H5BNY3_BLAVI)

HSP 1 Score: 87.8 bits (216), Expect = 4.140e-19
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIV 193
            S  W+KR L DPYV+ A  AG  SRAAFKLVEI+DK+ VL  G RVVDLGAAPGGWS +AA+ V
Sbjct:   26 SQQWLKRQLNDPYVARARAAGYRSRAAFKLVEIDDKYHVLKRGQRVVDLGAAPGGWSQIAAQRV 89
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: UPI001BBB1535 (RlmE family RNA methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BBB1535)

HSP 1 Score: 87.4 bits (215), Expect = 5.710e-19
Identity = 44/71 (61.97%), Postives = 50/71 (70.42%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S  W+KR L DPYV  A   G  SRAAFKL+EI+DKH++L  G RVVDLGAAPGGWS VAA  V A   +G
Sbjct:   25 SNQWLKRQLNDPYVRKAHAEGYRSRAAFKLLEIDDKHKILKRGARVVDLGAAPGGWSQVAAERVGAEKGQG 95
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A0D6JFQ9_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JFQ9_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 8.240e-19
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHA 199
            S  W++R L DPYV+AA   G  SRAA+KL+EI+DKHR+L  G RV+DLGAAPGGWS +AA  V A
Sbjct:   33 SARWLERQLNDPYVAAAKREGMRSRAAYKLLEIDDKHRILKPGQRVIDLGAAPGGWSQIAADRVKA 98
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A5C8CQY9_9BRAD (RlmE family RNA methyltransferase (Fragment) n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A5C8CQY9_9BRAD)

HSP 1 Score: 85.1 bits (209), Expect = 8.880e-19
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIV 193
            S LW++R L DPYV+ A  AG  SRAAFKL+EI+DK+R+L  G  VVDLGAAPGGWS +AA+ V
Sbjct:   23 SKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKYRLLKPGMAVVDLGAAPGGWSQIAAKRV 86
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A5N3PEP1_9HYPH (Ribosomal RNA large subunit methyltransferase E n=2 Tax=Microvirga TaxID=186650 RepID=A0A5N3PEP1_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 8.990e-19
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARG 205
            S +W++R L DPYV+ A   G  SRAAFKL+EI+DK+ +L  G RVVDLGAAPGGWS +AAR V A+G
Sbjct:   27 SKIWLERQLNDPYVARAKREGYRSRAAFKLLEIDDKYNLLKPGQRVVDLGAAPGGWSQIAARKVGAKG 94
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A366FDR4_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FDR4_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 9.330e-19
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S LW++R L DPYV+ A   G  SRAA+KL+EI+DK+R+L  G R+VDLGAAPGGWS VAA  V +R  RG
Sbjct:   28 STLWLERQLNDPYVAQARREGYRSRAAYKLLEIDDKYRMLKPGHRIVDLGAAPGGWSQVAAARVASRAGRG 98
[Close]
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Match: A0A6L5FR64_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FR64_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 1.060e-18
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:    2 SGLWMKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPGGWSMVAARIVHARGARG 214
            S  W++R L DPYV+ A   G  SRAA+KL EI+DKHR+L  G RVVDLGAAPGGWS +AAR V A   +G
Sbjct:   61 SRAWLERQLNDPYVARAKREGYRSRAAYKLTEIDDKHRILKPGGRVVDLGAAPGGWSQIAARRVGADAGKG 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009313B521.320e-2064.79RlmE family RNA methyltransferase n=1 Tax=Hyphomic... [more]
A0A1Q7BWV6_9PROT5.140e-2063.38Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI001BD418C05.240e-2061.97RlmE family RNA methyltransferase n=1 Tax=Bradyrhi... [more]
A0A0H5BNY3_BLAVI4.140e-1967.19Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI001BBB15355.710e-1961.97RlmE family RNA methyltransferase n=1 Tax=Hyphomic... [more]
A0A0D6JFQ9_9HYPH8.240e-1962.12Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A5C8CQY9_9BRAD8.880e-1964.06RlmE family RNA methyltransferase (Fragment) n=2 T... [more]
A0A5N3PEP1_9HYPH8.990e-1961.76Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A366FDR4_9HYPH9.330e-1960.56Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6L5FR64_9HYPH1.060e-1860.56Ribosomal RNA large subunit methyltransferase E n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:11251..12533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue8.7e-13
Seed eggNOG ortholog1096546.WYO_5299
Preferred nameftsJ
KEGG koko:K02427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
EggNOG OGs1JSAZ@119045,1MW1C@1224,2TSBW@28211,COG0293@1,COG0293@2
EC2.1.1.166
COG Functional cat.J
Best tax levelMethylobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons3
Model size323
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4847.1prot_L-elsbetiae_contig1733.4847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1733 11264..12533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.1061726-UTR-L-elsbetiae_contig1733:11250..112631622815722.1061726-UTR-L-elsbetiae_contig1733:11250..11263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 11251..11263 +
1691683059.8362753-UTR-L-elsbetiae_contig1733:11250..112631691683059.8362753-UTR-L-elsbetiae_contig1733:11250..11263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 11251..11263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.1195953-CDS-L-elsbetiae_contig1733:11263..112811622815722.1195953-CDS-L-elsbetiae_contig1733:11263..11281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 11264..11281 +
1691683059.848422-CDS-L-elsbetiae_contig1733:11263..112811691683059.848422-CDS-L-elsbetiae_contig1733:11263..11281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 11264..11281 +
1622815722.1373472-CDS-L-elsbetiae_contig1733:11838..119421622815722.1373472-CDS-L-elsbetiae_contig1733:11838..11942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 11839..11942 +
1691683059.8584387-CDS-L-elsbetiae_contig1733:11838..119421691683059.8584387-CDS-L-elsbetiae_contig1733:11838..11942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 11839..11942 +
1622815722.1513093-CDS-L-elsbetiae_contig1733:12346..125331622815722.1513093-CDS-L-elsbetiae_contig1733:12346..12533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 12347..12533 +
1691683059.8763711-CDS-L-elsbetiae_contig1733:12346..125331691683059.8763711-CDS-L-elsbetiae_contig1733:12346..12533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 12347..12533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1733.4847.1

>prot_L-elsbetiae_contig1733.4847.1 ID=prot_L-elsbetiae_contig1733.4847.1|Name=mRNA_L-elsbetiae_contig1733.4847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MKRHLKDPYVSAAIGAGAPSRAAFKLVEINDKHRVLSAGDRVVDLGAAPG
GWSMVAARIVHARGARGGSQQRGSPSSRGGAPPQLPPPLPEARVEAAERR
GRR
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mRNA from alignment at L-elsbetiae_contig1733:11251..12533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1733.4847.1 ID=mRNA_L-elsbetiae_contig1733.4847.1|Name=mRNA_L-elsbetiae_contig1733.4847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1283bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:11251..12533+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGGCTCTGGATGAAGCGGCATCTCAAGGTTTGATTTTGCTGCACCG
CACCGTCGAAAACGATGTGCTATCGCCGGGTGGAAAGGACGGGAGGGTTA
TTTCTGCGTTGCCTTAGACGTTCCCGCCGGGTCTGGGTGACATGCCATCT
CAAGGTTTGATTGCACCGGACCGTCAAGCGTCATGTGTTATTGCCGGGCG
GGAAGGGCAAGAGTGCTTTGTGCGCTGCCTTCCTTGGGCGTTCCCGGCTC
GGTAGTGGACGGCGGTCGATGCCATGCAAGAAAGGGCACCTCGGAAGCCA
GGCACCCTTTTGTTTGGACGGGCATGGGTGGAATCGGGCTGCAATTCCGC
TGCGTGACCGCCTACATCGCGGGTGAATCGAGGGGGGTCTGGGGCGTCCT
CGCGGCGGCGTAAGCGTCTCCCGCGACGTCCATGCGTACCGTGAAACGCA
AATCCAATCCAAGAAAAGACAAAAACAAAAATGCGGTGTGCGTGGCTCCT
TGGTGTGCACGGTGAGCGTGTTGGCACTGAAATCGCACAACGTGTTCGTG
CCTCCTCTCTTGGAAACTGGCAATGTGACCGCATGCAGGACCCTTACGTG
TCCGCGGCGATTGGAGCGGGGGCTCCGTCTCGTGCGGCCTTCAAGTTGGT
GGAGATCAACGACAAGCACCGGGTGCTGTCCGCGGGTGACCGGTGAGCGA
AACTTCCGACACCGCGTATATTTACTACCAAGAACAGAGCATCATGCAAT
ATTCAACGTTGGGTGCAGCTTTGTAAGTCGCTAACAGGCCACATTTTAGC
TTTTCCTCGAGGTGTCTTCTACCATTTGGGTAGCGGAGGGCGTGCGGGAT
CGTTTGGCTTTGTGCAGTCAAAACGGAAACAACAGCAACAACAACAACAC
CCCAAGGCAACAGCAAATAACGAAACAGCAGTAGCATTTCTTCCACAAAA
CTGGAAAGATAGGCTTGCGGCCGGCTCGCACGTCTACCGACGAAGGCAGT
CATCATGCCCGCCACACACCCCAGCAGTCACTCATCGCGCCCAGCACGCC
ACCACCTCCAATCCTGACCCCCCCCTCCCCCCCCCCTCCCTCCCAGAGTG
GTTGATCTTGGCGCGGCCCCCGGAGGGTGGTCCATGGTTGCCGCTCGCAT
CGTTCATGCGAGGGGGGCTCGTGGTGGCTCTCAGCAGCGTGGCAGCCCAT
CAAGCCGGGGGGGAGCGCCCCCCCAACTGCCACCGCCACTGCCCGAGGCA
CGCGTGGAGGCGGCAGAGAGGAGGGGGCGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1733:11251..12533+

>mRNA_L-elsbetiae_contig1733.4847.1 ID=mRNA_L-elsbetiae_contig1733.4847.1|Name=mRNA_L-elsbetiae_contig1733.4847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:11251..12533+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGGCATCTCAAGATGAAGCGGCATCTCAAGGACCCTTACGTGTC
CGCGGCGATTGGAGCGGGGGCTCCGTCTCGTGCGGCCTTCAAGTTGGTGG
AGATCAACGACAAGCACCGGGTGCTGTCCGCGGGTGACCGGACCCTTACG
TGTCCGCGGCGATTGGAGCGGGGGCTCCGTCTCGTGCGGCCTTCAAGTTG
GTGGAGATCAACGACAAGCACCGGGTGCTGTCCGCGGGTGACCGAGTGGT
TGATCTTGGCGCGGCCCCCGGAGGGTGGTCCATGGTTGCCGCTCGCATCG
TTCATGCGAGGGGGGCTCGTGGTGGCTCTCAGCAGCGTGGCAGCCCATCA
AGCCGGGGGGGAGCGCCCCCCCAACTGCCACCGCCACTGCCCGAGGCACG
CGTGGAGGCGGCAGAGAGGAGGGGGCGGCGGAGTGGTTGATCTTGGCGCG
GCCCCCGGAGGGTGGTCCATGGTTGCCGCTCGCATCGTTCATGCGAGGGG
GGCTCGTGGTGGCTCTCAGCAGCGTGGCAGCCCATCAAGCCGGGGGGGAG
CGCCCCCCCAACTGCCACCGCCACTGCCCGAGGCACGCGTGGAGGCGGCA
GAGAGGAGGGGGCGGCGG
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