mRNA_L-elsbetiae_contig17327.4845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17327.4845.1
Unique NamemRNA_L-elsbetiae_contig17327.4845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17327.4845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17327contigL-elsbetiae_contig17327:2392..3445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.944392-CDS-L-elsbetiae_contig17327:2391..25481622815721.944392-CDS-L-elsbetiae_contig17327:2391..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 2392..2548 -
1691683059.7730694-CDS-L-elsbetiae_contig17327:2391..25481691683059.7730694-CDS-L-elsbetiae_contig17327:2391..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 2392..2548 -
1622815721.959656-CDS-L-elsbetiae_contig17327:3353..34451622815721.959656-CDS-L-elsbetiae_contig17327:3353..3445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 3354..3445 -
1691683059.7821457-CDS-L-elsbetiae_contig17327:3353..34451691683059.7821457-CDS-L-elsbetiae_contig17327:3353..3445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 3354..3445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17327.4845.1prot_L-elsbetiae_contig17327.4845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17327 2392..3445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17327.4845.1

>prot_L-elsbetiae_contig17327.4845.1 ID=prot_L-elsbetiae_contig17327.4845.1|Name=mRNA_L-elsbetiae_contig17327.4845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
LVHTIYESGTRAVEVLAEESSAVSHAAEAFSAGALAISTIYHCAVNLNYG
GGGGGAPQYAAGDEHFWHGDLAGSSEYPVDGGC
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mRNA from alignment at L-elsbetiae_contig17327:2392..3445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17327.4845.1 ID=mRNA_L-elsbetiae_contig17327.4845.1|Name=mRNA_L-elsbetiae_contig17327.4845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1054bp|location=Sequence derived from alignment at L-elsbetiae_contig17327:2392..3445- (Laminarionema elsbetiae ELsaHSoW15)
TTAGTGCACACCATCTACGAGAGCGGAACACGCGCCGTGGAGGTGCTTGC
GGAGGAGTCGTCCGCGGTCTCGCATGCTGCGGAGGCCTTCAGGTAGGTGT
GCTTGCTTGTTTGTTTTGTATCCTTGGGTTTGTGTCTGTGACCGCCGTCG
GTACTTGAGCTGTCCAGACAGGAAGGAAGGTCGGCTGAGTTGTTCTTCTC
GTCCTGCTACAGAACTGGTGAATTTAGCCCAGCAGTAGTCTACATAGCTA
GACTACCTCTAGTCTCGATACATACAACCACGTAAATTTATGACAATACG
CGCCGTTTTGAGCAAAGACGGTTTTATCGCACGAGGAATTTTGTATGGCG
AGCTACAACAGCAGTATCAAAGCCTGTAGCGGACCGCCCGTGGTGGTCGA
GGTACACACACACACGCGCGCGCGCGCACACACACACATACACACACACG
CGCGCACGTGCGCGCGCCCGTGTTATTCAATGCCCCTCCAGGCCGTACAT
ACGTACTGGAACGACCCTTTCTACTGTTGGGTAGAATAAAGCATGTCAAT
CTTCGTCGTGCCATGCTGTTGTGGCTCGCCTCGCTCTTTGGCTGGTGGAT
ATGGGGTAAAACATTGCAGAAATCGTGAGGATTATCTACTCGCTGAAGAC
ACACCGCTTTTATCAAAAACGATGAGGAGGGAGTAGACTATGCAAGAACG
AATCGGGGTACAGATTGATGTACTGTACCTCAGTAGGTTGTCAGACAGAT
GTGCAGGAGGACTCGTCATGTCGAAAACTCTCACCTCCCCCGATGTATGT
CGCGCACACCTTCATGGACGACAGAACTTTGACGTTTCAACCTAGCTCTG
CTGCGTTGCTGACGATCTCCCCTCTGCATTCTGTGTTTTTCTCACAGCGC
CGGAGCACTTGCGATTTCGACAATTTATCACTGCGCTGTCAATCTCAATT
ATGGGGGTGGTGGAGGAGGGGCACCTCAGTACGCGGCGGGCGACGAACAT
TTTTGGCATGGAGATTTGGCGGGCTCTTCTGAGTACCCTGTGGACGGAGG
ATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17327:2392..3445-

>mRNA_L-elsbetiae_contig17327.4845.1 ID=mRNA_L-elsbetiae_contig17327.4845.1|Name=mRNA_L-elsbetiae_contig17327.4845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig17327:2392..3445- (Laminarionema elsbetiae ELsaHSoW15)
TTAGTGCACACCATCTACGAGAGCGGAACACGCGCCGTGGAGGTGCTTGC
GGAGGAGTCGTCCGCGGTCTCGCATGCTGCGGAGGCCTTCAGTTAGTGCA
CACCATCTACGAGAGCGGAACACGCGCCGTGGAGGTGCTTGCGGAGGAGT
CGTCCGCGGTCTCGCATGCTGCGGAGGCCTTCAGCGCCGGAGCACTTGCG
ATTTCGACAATTTATCACTGCGCTGTCAATCTCAATTATGGGGGTGGTGG
AGGAGGGGCACCTCAGTACGCGGCGGGCGACGAACATTTTTGGCATGGAG
ATTTGGCGGGCTCTTCTGAGTACCCTGTGGACGGAGGATGCCGCCGGAGC
ACTTGCGATTTCGACAATTTATCACTGCGCTGTCAATCTCAATTATGGGG
GTGGTGGAGGAGGGGCACCTCAGTACGCGGCGGGCGACGAACATTTTTGG
CATGGAGATTTGGCGGGCTCTTCTGAGTACCCTGTGGACGGAGGATGC
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